BAC Information

Click to search

BAC

Clone NameB6Ng01-062B07
Chromosome16 (Build37)
Map Location 37,879,629 - 38,013,514
singlet/doubletdoublet
Overlap geneLrrc58, Gpr156, LOC100043271
Upstream geneLOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264
Downstream geneLOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B07.bB6Ng01-062B07.g
ACCDH882586DH882587
length1,1711,052
definitionDH882586|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B07, 5' end.DH882587|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,879,629 - 37,880,828)(38,012,459 - 38,013,514)
sequence
gaattctcttaactgttttttttttctttttttttttaatttactttttt
agtacctttggaatgccttaaaaattgttcgtttaaaatttcagatatca
tcaataaatcagtaaaataaagccaatcattgaacatgcttctctacttc
tactaccccaggttccttattgaactataagttaaaaatcatgacattta
taagacactttctctttgtagagtttgaaagtttacatgagagtattaca
ggaagctaacatggttactaggatttattataagcctattgatgtctctt
aatttctaagttgttcagagtagtaaactataaagagctatgggggaacc
caggcctggtggcacacacctctattcccagtattcaggaggcataggca
agtggagctctgtgagtaggagaccagcctagtgtacacagagagttcca
ggcaggccaggtctacatagtgagatcctgtctttatgaatggatgggtg
aatttttgaatatttggtctgttttgtgatagacaggagttggaaagctt
agatgcgtgtgtaagattcggggtttgagatccgtctttagagagacagt
gtgccacaaatctatatagtttggttatactgtagccatagggatggact
ttgtatgttagagaatctgtaaggtagagcctggcaatacaacaaccttt
gctttcctcttagctctagctgtagctctacttcactgaagggccatagt
tcaggagcactgagttaaaaaccaaataagggaaatggcagttttagtct
accatagtgtatttgattttgtgtgaactaaatgagatcatcagctttgc
agcatggagatatagagcctgcgtaaatgtgagatgacattttgttaatg
tcagttttgctctcccagtcagggtgcttgtgtattgatcctaaaccctt
ccttggaagagtggaggcaagaggatcggagttcaggccagctagagttt
tataggctgcctggctttaagtgacctgatttccaaggataagatggata
ttacggttactaaaggtttctaaactatggctcttggaattactgacatc
taatcttctcctcgtaatcatacaagaagtgctttagctctgactgtaga
attgctagcaacggaggtggg
gaattcctttttatctgctcaggatgttctctttacagacaggcaaagag
ttagctcatctgcagaataaaccttgaagttttgatcaggaactattggg
catccagcactgtagacgatgctgtggaaaggcaggggttaaacagcctt
tgccacccagcttctgataacatttgaagaggtgagatatgagtgtctga
aaagttaacaatggaggatttatgtaatagcccaggatcaacaatagagc
tgctttcaggagcctatcaggaatagaagatttattacctaataagtcgg
gacagctggcactagttggaagggaaactgcttcaggctagggtagttca
aggaaggcgagaggggcgaaaggcctcagccaggtggggttgttgtggaa
acagcacagccaatggacaagagcaagaagacttagtaagctgagaattc
tgggagtcaatatggagagccccagactccaggtcagtgaaactttgtcc
cgagggaaatggagagcaaggaaggcctctcagccccatagaggtgtgag
ctgacactcagctaatgatttaagctacagatggcattcacatggcatgg
ggtttttaatgggtcccttactcttttttgtgctaatatacttaggtggg
gaggggatcagcttggggtagtttatttgctttcagtataacctgggctc
agaattgaactcttgaagggggctgaagttgaccagggcaggtagcttca
gaaggcagcctttcaagcctcagggacagctcaatgactcagcacgagga
ggattttgcaacaggctgactgaaccagaccagccggctttttctcagga
cacctcaagcgtggcccctgccctgatgtgtgaattcactcagtcttcga
agcatacctgtagcatgtgccctcgagcagtgtttgggaggtccagaatt
gctagaatcccagtgagatttcagtgtctcaggggctctctgcctctaag
gttcaatgggcttccccttacctatctcctcccaaggagagtttcttaac
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37879629_37880828
seq2: B6Ng01-062B07.b_46_1216

seq1  GAATTCTCTTAACTGTTTTTTTTTTCTTTTTTTTTTTAATTTACTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAACTGTTTTTTTTTTCTTTTTTTTTTTAATTTACTTTTTT  50

seq1  AGTACCTTTGGAATGCCTTAAAAATTGTTCGTTTAAAATTTCAGATATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTTTGGAATGCCTTAAAAATTGTTCGTTTAAAATTTCAGATATCA  100

seq1  TCAATAAATCAGTAAAATAAAGCCAATCATTGAACATGCTTCTCTACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAATCAGTAAAATAAAGCCAATCATTGAACATGCTTCTCTACTTC  150

seq1  TACTACCCCAGGTTCCTTATTGAACTATAAGTTAAAAATCATGACATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCCCAGGTTCCTTATTGAACTATAAGTTAAAAATCATGACATTTA  200

seq1  TAAGACACTTTCTCTTTGTAGAGTTTGAAAGTTTACATGAGAGTATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACTTTCTCTTTGTAGAGTTTGAAAGTTTACATGAGAGTATTACA  250

seq1  GGAAGCTAACATGGTTACTAGGATTTATTATAAGCCTATTGATGTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTAACATGGTTACTAGGATTTATTATAAGCCTATTGATGTCTCTT  300

seq1  AATTTCTAAGTTGTTCAGAGTAGTAAACTATAAAGAGCTATGGGGGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAAGTTGTTCAGAGTAGTAAACTATAAAGAGCTATGGGGGAACC  350

seq1  CAGGCCTGGTGGCACACACCTCTATTCCCAGTATTCAGGAGGCATAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGGTGGCACACACCTCTATTCCCAGTATTCAGGAGGCATAGGCA  400

seq1  AGTGGAGCTCTGTGAGTAGGAGACCAGCCTAGTGTACACAGAGAGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCTCTGTGAGTAGGAGACCAGCCTAGTGTACACAGAGAGTTCCA  450

seq1  GGCAGGCCAGGTCTACATAGTGAGATCCTGTCTTTATGAATGGATGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCCAGGTCTACATAGTGAGATCCTGTCTTTATGAATGGATGGGTG  500

seq1  AATTTTTGAATATTTGGTCTGTTTTGTGATAGACAGGAGTTGGAAAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGAATATTTGGTCTGTTTTGTGATAGACAGGAGTTGGAAAGCTT  550

seq1  AGATGCGTGTGTAAGATTCGGGGTTTGAGATCCGTCTTTAGAGAGACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGTGTGTAAGATTCGGGGTTTGAGATCCGTCTTTAGAGAGACAGT  600

seq1  GTGCCACAAATCTATATAGTTTGGTTATACTGTAGCCATAGGGATGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACAAATCTATATAGTTTGGTTATACTGTAGCCATAGGGATGGACT  650

seq1  TTGTATGTTAGAGAATCTGTAAGGTAGAGCCTGGCAATACAACAACCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTTAGAGAATCTGTAAGGTAGAGCCTGGCAATACAACAACCTTT  700

seq1  GCTTTCCTCTTAGCTCTAGCTGTAGCTCTACTTCACTGAAGGGCCATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCTTAGCTCTAGCTGTAGCTCTACTTCACTGAAGGGCCATAGT  750

seq1  TCAGGAGCACTGAGTTAAAAACCAAATAAGGGAAATGGCAGTTTTAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCACTGAGTTAAAAACCAAATAAGGGAAATGGCAGTTTTAGTCT  800

seq1  ACCATAGTGTATTTGATTTTGTGTGAACTAAATGAGATCATCAGCTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTGTATTTGATTTTGTGTGAACTAAATGAGATCATCAGCTTTGC  850

seq1  AGCATGGAGATATAGAGCCTGCGTAAATGTGAGATGACATTTTGTTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAGATATAGAGCCTGCGTAAATGTGAGATGACATTTTGTTAATG  900

seq1  TCAGTTTTGCTCTCCCAGTCAGGGTGCTTGTGTATTGATCCTAAACCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTGCTCTCCCAGTCAGGGTGCTTGTGTATTGATCCTAAACCCTT  950

seq1  CCTTGGAAGAGGTGGAGGCAAGAGGATCGGGAGTTCAAGGCCAGGCTAGA  1000
      |||||||||| ||||||||||||||||| ||||||| |||||| ||||||
seq2  CCTTGGAAGA-GTGGAGGCAAGAGGATC-GGAGTTC-AGGCCA-GCTAGA  996

seq1  GTTTTATAGGCTGCCTGGGCTTTAAGTGACCTTGATTTCCCAAAGGATAA  1050
      |||||||||||||||| |||||||||||||| ||||||||  ||||||||
seq2  GTTTTATAGGCTGCCT-GGCTTTAAGTGACC-TGATTTCC--AAGGATAA  1042

seq1  GAATGGATATAACAGTTACTAAAGGGGTTTCTAAAACTATGGCTCTTGAA  1100
      | |||||||| || |||||||||  ||||||| ||||||||||||||| |
seq2  G-ATGGATATTACGGTTACTAAA--GGTTTCT-AAACTATGGCTCTTGGA  1088

seq1  TTTTACTGACTTCTTATATTCTTCTTCCTTCCTTAATCATTACTAAAGGA  1150
        |||||||| ||| || |||| ||      | ||||||    || | ||
seq2  -ATTACTGACATCTAATCTTCTCCT------CGTAATCA----TACAAGA  1127

seq1  AGTGCTTTTTAGTCTCTGACTGTAGGATAGTGCTAGCAACGGGAGGTGGG  1200
      |||||  ||||| |||||||||||| ||  |||||||||| |||||||||
seq2  AGTGC--TTTAG-CTCTGACTGTAGAAT--TGCTAGCAAC-GGAGGTGGG  1171

seq1: chr16_38012459_38013514
seq2: B6Ng01-062B07.g_67_1118 (reverse)

seq1  TGGTTAAGAAACTCTCCCTGGGAGAGGTTAGGTAAGGGGAAGCCATGTGA  50
      ||||||||||||||||| ||||||  | ||||||||||||||||   |||
seq2  TGGTTAAGAAACTCTCCTTGGGAGGAGATAGGTAAGGGGAAGCCCATTGA  50

seq1  CCCTTAGAGGCAGAGAGCCCCTGAGTACACTGAAATCTCACTGGGGATTC  100
       |||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  ACCTTAGAGGCAGAGAGCCCCTGAG-ACACTGAAATCTCACT-GGGATTC  98

seq1  CTAAGCAATTCTTGGACTCCCCAACACTGCTTCGAGGGCACATGCTACAG  150
         ||||||||| |  ||||| |||||||| |||||||||||||||||||
seq2  --TAGCAATTCTGGACCTCCCAAACACTGC-TCGAGGGCACATGCTACAG  145

seq1  GTATGCTTCGAGAACTGAGTGAATTTCAACACATCAGGGCAGGGGCCACG  200
      |||||||||||  ||||||||||||   ||||||||||||||||||||||
seq2  GTATGCTTCGAAGACTGAGTGAATT--CACACATCAGGGCAGGGGCCACG  193

seq1  CCTGAGGTGTCCTGAGAAAAAGCCGGCTGGTCTGGTTCAGTCAGCCTGTT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTGTCCTGAGAAAAAGCCGGCTGGTCTGGTTCAGTCAGCCTGTT  243

seq1  GCAAAATCCTCCTCGTGCTGAGTCATTGAGCTGTCCCTGAGGCTTG-AAG  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAAAATCCTCCTCGTGCTGAGTCATTGAGCTGTCCCTGAGGCTTGAAAG  293

seq1  GCTGCCTTCTGAAGCTACCTG-CCTGGTCAACTTCAG-CCCCTTCAAGAG  347
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GCTGCCTTCTGAAGCTACCTGCCCTGGTCAACTTCAGCCCCCTTCAAGAG  343

seq1  TTCAATTCTGAGCCCAGGTTATACTGAAAGCAAATAAACTACCCCAAGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTGAGCCCAGGTTATACTGAAAGCAAATAAACTACCCCAAGCT  393

seq1  GATCCCCTCCCCACCTAAGTATATTAGCACAAAAAAGAGTAAGGGACCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCTCCCCACCTAAGTATATTAGCACAAAAAAGAGTAAGGGACCCA  443

seq1  TTAAAAACCCCATGCCATGTGAATGCCATCTGTAGCTTAAATCATTAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCCCATGCCATGTGAATGCCATCTGTAGCTTAAATCATTAGCT  493

seq1  GAGTGTCAGCTCACACCTCTATGGGGCTGAGAGGCCTTCCTTGCTCTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCAGCTCACACCTCTATGGGGCTGAGAGGCCTTCCTTGCTCTCCA  543

seq1  TTTCCCTCGGGACAAAGTTTCACTGACCTGGAGTCTGGGGCTCTCCATAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCGGGACAAAGTTTCACTGACCTGGAGTCTGGGGCTCTCCATAT  593

seq1  TGACTCCCAGAATTCTCAGCTTACTAAGTCTTCTTGCTCTTGTCCATTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCAGAATTCTCAGCTTACTAAGTCTTCTTGCTCTTGTCCATTGG  643

seq1  CTGTGCTGTTTCCACAACAACCCCACCTGGCTGAGGCCTTTCGCCCCTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGTTTCCACAACAACCCCACCTGGCTGAGGCCTTTCGCCCCTCT  693

seq1  CGCCTTCCTTGAACTACCCTAGCCTGAAGCAGTTTCCCTTCCAACTAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCCTTGAACTACCCTAGCCTGAAGCAGTTTCCCTTCCAACTAGTG  743

seq1  CCAGCTGTCCCGACTTATTAGGTAATAAATCTTCTATTCCTGATAGGCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTCCCGACTTATTAGGTAATAAATCTTCTATTCCTGATAGGCTC  793

seq1  CTGAAAGCAGCTCTATTGTTGATCCTGGGCTATTACATAAATCCTCCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAGCTCTATTGTTGATCCTGGGCTATTACATAAATCCTCCATT  843

seq1  GTTAACTTTTCAGACACTCATATCTCACCTCTTCAAATGTTATCAGAAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTTTCAGACACTCATATCTCACCTCTTCAAATGTTATCAGAAGC  893

seq1  TGGGTGGCAAAGGCTGTTTAACCCCTGCCTTTCCACAGCATCGTCTACAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCAAAGGCTGTTTAACCCCTGCCTTTCCACAGCATCGTCTACAG  943

seq1  TGCTGGATGCCCAATAGTTCCTGATCAAAACTTCAAGGTTTATTCTGCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATGCCCAATAGTTCCTGATCAAAACTTCAAGGTTTATTCTGCAG  993

seq1  ATGAGCTAACTCTTTGCCTGTCTGTAAAGAGAACATCCTGAGCAGATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTAACTCTTTGCCTGTCTGTAAAGAGAACATCCTGAGCAGATAAA  1043

seq1  AAGGAATTC  1056
      |||||||||
seq2  AAGGAATTC  1052