BAC Information

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BAC

Clone NameB6Ng01-062B09
Chromosome16 (Build37)
Map Location 41,945,049 - 42,064,583
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B09.bB6Ng01-062B09.g
ACCDH882590DH882591
length9101,123
definitionDH882590|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B09, 5' end.DH882591|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,063,675 - 42,064,583)(41,945,049 - 41,946,203)
sequence
gaattccagtgtaggatattaatgtttaaaatctaacatcaatcatccaa
tagtgaggtctttggaaccaaacacaggggctcacagaagattcttgcct
cttctgcagattgatctccagcctgcctcttttctttgaagtttgtagtt
tagtccagtagattgggagtggtggaggaattaaaaatgaagaaagaaag
ggagcaacaaggggcttggtagccgaaatacaaagagagtcagatgcaat
ggaatatgaaagttggtacacctaacgtatacaatgagcaagcagaaatg
caactttctgttgcatctttcaaacttcagcttttcaatctcaaggctaa
gttcccatcacccaacagttcttatttgtcttatacataacacaagtcaa
gagaacgaagaaacactcaatcatttacactgttggaccttaaggtgtgc
cacatgaagaagaatgcttttccaatgcctaacattattaatggtactct
gttatgcttgcagacaggagcatgttgtcatgggactcttacggaagact
aggagaaaggattgtgggcctcaaaggggataggaaccccacaggaagac
caacagagtcaactcacctgactctttggactctcagatactgaaccacc
aagcaaagaatataagggggctggagctaagcctaccaacacatatggag
tcgatgtttagcttggtcttcatgtgggtccagaagaaatggggcaggga
ttatctcaaaagctgttgcctgtatttgggatatgctcttctagctcagt
gggagaggaagcacctagcatcacagagaactgaagcaccagaggagggg
aatacctgggggtgtgtacacccattcagaggagaaaggggagggagtga
tgggggaagg
gaattcaaagttatcatcctaggcatgtactagacttggggtacaagaga
ccctgtctccaaatgaaaacagaaattaaaacaacaaaagcatagtgttt
tatatttcataaaagtaagaaaaacaaattatttgagattatgtaaatgg
gccagttgaccactgttggtcctattctgggagtaattgtttgatttcct
ttgactcattgtcctgttttattaggcagcacacatgggtgaaggtaagg
ggagggatcaagccattcacaggtagtaaagatggtttcacaggtttggg
gttattttaaggcaacatttactgacagagaagaatcaatagccatggag
aggctactgtggaaacttaccctcaagaccacttttaattttgcaaactt
aggattttctggtttaagtgatggaaactatctaatttgatgcaagaaag
tggtgattactaaggagaatatggaagataatagattcaaataaaaggaa
gaaagtccttaacttggaaagcaggggaaaggcatctctagagatgcaga
cttgcaggaactagggaaagcaatattctcacagtagtgggcttttggtt
gtgtttcttaactatttctggggatcaaacaactccaacatctgaaaaca
ggagacaagagtgatcctttatttctgcatgtgcattttagctcaggtag
gctggatctgactatgaggcactcactgcaccttgcctcaccagatttag
tgaataagaaccatatatagaataacccatggcttcagtgaaggagctgg
atagaaaaataactcaacaagtcaatggcctttctgtactcaaaggataa
acaggctgagaaagaaattagggaaacaacacccttcacatagtcacaag
taatataaataccttggcgtgactctaactaaggagtgaaagatctgtat
gatagaagttcgagtctctgaagaaaaattaaagaagatctcagagatgg
aaagatcttcatgctcatggatgcagatcatatagtaaaaatggtatctt
gcaaagcaatctacgaatcatgcatctcatcaatttcacttaattcttca
cattgagcatctgcattcatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42063675_42064583
seq2: B6Ng01-062B09.b_46_955 (reverse)

seq1  CCTTCCCCCATCACTCCCTCCCC-TTCTCCTCTGAGTGGGTGTACACACC  49
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CCTTCCCCCATCACTCCCTCCCCTTTCTCCTCTGAATGGGTGTACACACC  50

seq1  CCCAGGTATTCCCCTCCTCTGGTGCTTCAGTTCTCTGTGATGCTAGGTGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTATTCCCCTCCTCTGGTGCTTCAGTTCTCTGTGATGCTAGGTGC  100

seq1  TTCCTCTCCCACTGAGCTAGAAGAGCATATCCCAAATACAGGCAACAGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCCACTGAGCTAGAAGAGCATATCCCAAATACAGGCAACAGCT  150

seq1  TTTGAGATAATCCCTGCCCCATTTCTTCTGGACCCACATGAAGACCAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATAATCCCTGCCCCATTTCTTCTGGACCCACATGAAGACCAAGC  200

seq1  TAAACATCGACTCCATATGTGTTGGTAGGCTTAGCTCCAGCCCCCTTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCGACTCCATATGTGTTGGTAGGCTTAGCTCCAGCCCCCTTATA  250

seq1  TTCTTTGCTTGGTGGTTCAGTATCTGAGAGTCCAAAGAGTCAGGTGAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCTTGGTGGTTCAGTATCTGAGAGTCCAAAGAGTCAGGTGAGTT  300

seq1  GACTCTGTTGGTCTTCCTGTGGGGTTCCTATCCCCTTTGAGGCCCACAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTTGGTCTTCCTGTGGGGTTCCTATCCCCTTTGAGGCCCACAAT  350

seq1  CCTTTCTCCTAGTCTTCCGTAAGAGTCCCATGACAACATGCTCCTGTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCTAGTCTTCCGTAAGAGTCCCATGACAACATGCTCCTGTCTG  400

seq1  CAAGCATAACAGAGTACCATTAATAATGTTAGGCATTGGAAAAGCATTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATAACAGAGTACCATTAATAATGTTAGGCATTGGAAAAGCATTCT  450

seq1  TCTTCATGTGGCACACCTTAAGGTCCAACAGTGTAAATGATTGAGTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTGGCACACCTTAAGGTCCAACAGTGTAAATGATTGAGTGTTT  500

seq1  CTTCGTTCTCTTGACTTGTGTTATGTATAAGACAAATAAGAACTGTTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTTCTCTTGACTTGTGTTATGTATAAGACAAATAAGAACTGTTGGG  550

seq1  TGATGGGAACTTAGCCTTGAGATTGAAAAGCTGAAGTTTGAAAGATGCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAACTTAGCCTTGAGATTGAAAAGCTGAAGTTTGAAAGATGCAA  600

seq1  CAGAAAGTTGCATTTCTGCTTGCTCATTGTATACGTTAGGTGTACCAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTTGCATTTCTGCTTGCTCATTGTATACGTTAGGTGTACCAACT  650

seq1  TTCATATTCCATTGCATCTGACTCTCTTTGTATTTCGGCTACCAAGCCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCCATTGCATCTGACTCTCTTTGTATTTCGGCTACCAAGCCCC  700

seq1  TTGTTGCTCCCTTTCTTTCTTCATTTTTAATTCCTCCACCACTCCCAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTCCCTTTCTTTCTTCATTTTTAATTCCTCCACCACTCCCAATC  750

seq1  TACTGGACTAAACTACAAACTTCAAAGAAAAGAGGCAGGCTGGAGATCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGACTAAACTACAAACTTCAAAGAAAAGAGGCAGGCTGGAGATCAA  800

seq1  TCTGCAGAAGAGGCAAGAATCTTCTGTGAGCCCCTGTGTTTGGTTCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAAGAGGCAAGAATCTTCTGTGAGCCCCTGTGTTTGGTTCCAAA  850

seq1  GACCTCACTATTGGATGATTGATGTTAGATTTTAAACATTAATATCCTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACTATTGGATGATTGATGTTAGATTTTAAACATTAATATCCTAC  900

seq1  ACTGGAATTC  909
      ||||||||||
seq2  ACTGGAATTC  910

seq1: chr16_41945049_41946203
seq2: B6Ng01-062B09.g_68_1190

seq1  GAATTCAAAGTTATCATCCTAGGCATGTACTAGACTTGGGGTACAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTATCATCCTAGGCATGTACTAGACTTGGGGTACAAGAGA  50

seq1  CCCTGTCTCCAAATGAAAACAGAAATTAAAACAACAAAAGCATAGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCCAAATGAAAACAGAAATTAAAACAACAAAAGCATAGTGTTT  100

seq1  TATATTTCATAAAAGTAAGAAAAACAAATTATTTGAGATTATGTAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCATAAAAGTAAGAAAAACAAATTATTTGAGATTATGTAAATGG  150

seq1  GCCAGTTGACCACTGTTGGTCCTATTCTGGGAGTAATTGTTTGATTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTGACCACTGTTGGTCCTATTCTGGGAGTAATTGTTTGATTTCCT  200

seq1  TTGACTCATTGTCCTGTTTTATTAGGCAGCACACATGGGTGAAGGTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCATTGTCCTGTTTTATTAGGCAGCACACATGGGTGAAGGTAAGG  250

seq1  GGAGGGATCAAGCCATTCACAGGTAGTAAAGATGGTTTCACAGGTTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATCAAGCCATTCACAGGTAGTAAAGATGGTTTCACAGGTTTGGG  300

seq1  GTTATTTTAAGGCAACATTTACTGACAGAGAAGAATCAATAGCCATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTAAGGCAACATTTACTGACAGAGAAGAATCAATAGCCATGGAG  350

seq1  AGGCTACTGTGGAAACTTACCCTCAAGACCACTTTTAATTTTGCAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTGTGGAAACTTACCCTCAAGACCACTTTTAATTTTGCAAACTT  400

seq1  AGGATTTTCTGGTTTAAGTGATGGAAACTATCTAATTTGATGCAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCTGGTTTAAGTGATGGAAACTATCTAATTTGATGCAAGAAAG  450

seq1  TGGTGATTACTAAGGAGAATATGGAAGATAATAGATTCAAATAAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTACTAAGGAGAATATGGAAGATAATAGATTCAAATAAAAGGAA  500

seq1  GAAAGTCCTTAACTTGGAAAGCAGGGGAAAGGCATCTCTAGAGATGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTTAACTTGGAAAGCAGGGGAAAGGCATCTCTAGAGATGCAGA  550

seq1  CTTGCAGGAACTAGGGAAAGCAATATTCTCACAGTAGTGGGCTTTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGAACTAGGGAAAGCAATATTCTCACAGTAGTGGGCTTTTGGTT  600

seq1  GTGTTTCTTAACTATTTCTGGGGATCAAACAACTCCAACATCTGAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTAACTATTTCTGGGGATCAAACAACTCCAACATCTGAAAACA  650

seq1  GGAGACAAGAGTGATCCTTTATTTCTGCATGTGCATTTTAGCTCAGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAGAGTGATCCTTTATTTCTGCATGTGCATTTTAGCTCAGGTAG  700

seq1  GCTGGATCTGACTATGAGGCACTCACTGCACCTTGCCTCACCAGATTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCTGACTATGAGGCACTCACTGCACCTTGCCTCACCAGATTTAG  750

seq1  TGAATAAGAACCATATATAGAATAACCCATGGCTTCAGTGAAGGAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGAACCATATATAGAATAACCCATGGCTTCAGTGAAGGAGCTGG  800

seq1  ATAGAAAAATAACTCAAACAAGTCAATGGCCTTTCTGTACTCAAAGGATA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAATAACTC-AACAAGTCAATGGCCTTTCTGTACTCAAAGGATA  849

seq1  AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCACA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCAC-ATAGTCACA  898

seq1  AGTAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCT  950
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGTAATAT-AAATACCTTGGCGTGACTCTAACTAAGG-AGTGAAAGATCT  946

seq1  GTATGATAAGAAGTTCGAGTCTCTGAAGAAAAATTAAAGAAGATCTCAGA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  GTATGAT-AGAAGTTCGAGTCTCTGAAGAAAAATTAAAGAAGATCTCAG-  994

seq1  AGATGGAAAGATCCTCCATGCTCATGGATTGGCAGGATCAATATAGTAAA  1050
      |||||||||||| || |||||||||||||  ||| |||| ||||||||||
seq2  AGATGGAAAGAT-CTTCATGCTCATGGAT--GCA-GATC-ATATAGTAAA  1039

seq1  AATGGTTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCA  1100
      ||||| ||||||||  |||||||||||| || || |||||   | |||| 
seq2  AATGG-TATCTTGC--AAAGCAATCTAC-GAATC-ATGCA--TCTCATC-  1081

seq1  AAATTCCAACTCAATTCTTCAACCAATTAGAAAGGGCAATCTGCAAATTC  1150
       |||| | ||| |||||||||  || | ||        ||||||  ||||
seq2  -AATTTC-ACTTAATTCTTCA--CATTGAG-------CATCTGC--ATTC  1118

seq1  ATCTG  1155
      |||||
seq2  ATCTG  1123