BAC Information

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BAC

Clone NameB6Ng01-063C19
Chromosome2 (Build37)16 (Build37)
Map Location 142,776,483 - 142,777,69879,017,427 - 79,018,600
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063C19.bB6Ng01-063C19.g
ACCDH883349DH883350
length9721,144
definitionDH883349|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C19, 5' end.DH883350|Mus musculus domesticus DNA, BAC clone: B6Ng01-063C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,483 - 142,777,698)(79,017,427 - 79,018,600)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttactgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccaggtg
aatttgcaaattgctccttctaattcgttgaattgagttggaattttgat
gggtgtttgttcttaaagcccaagccagccatcataatgagaatgcctac
aacacctgagatcacatgctcacatttcactccatcgaatacaacgatca
gctgataggttgtttctgtagcttaagattgcagttttcaaaataaagat
agaaaaaacacagatggttaatatggtgacccaattaagtatcaagagct
gaaaggacctagatatagctgt
gaattctattagtaacctctgcttaatccgacgcttataaggtctgtgtc
catatggacatgtgtccaggaggggagcaaaaagttaattttcactctta
gaagagagtttgtgttaaacacatgtggaagaaaataagataagaaatga
agacatagttgcagttactaataggcttgtgattggtagtttttttatga
ctatttattatgtctattataggaaataatagatacaacttgagaaataa
tacatcacattgaatttgtgtgaaataaatttcaattattctcaattgtt
atctattatcttaataatatataataaatcttttgaaattatatgtaaca
tgttaataagtttatattagtatccaaaattaaatctgtcctgaggatta
agagtctgattttaaaaaatgaataattttaatacattattataactatt
cataatataaatagttttatacaatttgtgacaaattggttatatgtttt
ttcatgaaaatcaacttttatttgttccttaaaaatataaccaatgatta
cagaaaatggactagttgtgaagatagattgatgaaaacagtacagagta
gggaaacggtccttgatgagagattctgtgaatgaaattagtatctgtgt
gtactaggggttaacaattaatcaaacaccattgcatgctggtctgcagg
aaaaggctaagacagcatgaatgcagattgattttcgcatggttgtttag
taaattaactcttactgtgtgctaggaaatgaaaaacggctgaaatcagg
atacaatagaaaaaaatcttaaaaatagtgaacattaaaatagctacagc
cacttttttcttaattagtcaagaaccccagaagttactcaggcctggag
tgtagattttttttctgtctacacttagtgtacttcatccacagagtgtc
aggattgtttttctatccatattatatttgtacatagaatattagcttta
tactctctcagtgtgtttcatacagaattacattacagggtcatctgagt
tgatggagcacagactaagtccatgttagaggatctggagtggttatgtc
caaactttcaaaatatctcggaatggagggcataggtttatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776483_142777698
seq2: B6Ng01-063C19.b_48_800 (reverse)

seq1  CCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTG  50
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  CCCATCAAAATTCCAACTCAA---TTCAACGAATTAGAAGGAGCAATTTG  47

seq1  CAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCA  100
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  CAAATTCACCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCA  97

seq1  AGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAC  147

seq1  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACA  197

seq1  AGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCT  247

seq1  ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAA  297

seq1  GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAG  350
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAG  347

seq1  AAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTA  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTA  397

seq1  AGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAG  447

seq1  GAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCT  497

seq1  GAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGG  547

seq1  ACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAGTAAG  597

seq1  ACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  647

seq1  AGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACT  697

seq1  TCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCA  750
      |||||||||||||||||||||||||||||||||||||| ||         
seq2  TCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA---------  738

seq1  GTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGT  800
         ||| |||||    |||                               
seq2  -CTGAACAAAGA----ATTC------------------------------  753

seq1  TATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAG  850
                                                        
seq2  --------------------------------------------------  753

seq1  GTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAA  900
                                                        
seq2  --------------------------------------------------  753

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGG  950
                                                        
seq2  --------------------------------------------------  753

seq1  AAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATT  1000
                                                        
seq2  --------------------------------------------------  753

seq1  GACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACAC  1050
                                                        
seq2  --------------------------------------------------  753

seq1  TGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCT  1100
                                                        
seq2  --------------------------------------------------  753

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAG  1150
                                                        
seq2  --------------------------------------------------  753

seq1  AAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  1200
                                                        
seq2  --------------------------------------------------  753

seq1  ACTGAACAAAGAATTC  1216
                      
seq2  ----------------  753

seq1: chr16_79017427_79018600
seq2: B6Ng01-063C19.g_65_1208

seq1  GAATTCTATTAGTAACCTCTGCTTAATCCGACGCTTATAAGGTCTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAGTAACCTCTGCTTAATCCGACGCTTATAAGGTCTGTGTC  50

seq1  CATATGGACATGTGTCCAGGAGGGGAGCAAAAAGTTAATTTTCACTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGACATGTGTCCAGGAGGGGAGCAAAAAGTTAATTTTCACTCTTA  100

seq1  GAAGAGAGTTTGTGTTAAACACATGTGGAAGAAAATAAGATAAGAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGTTTGTGTTAAACACATGTGGAAGAAAATAAGATAAGAAATGA  150

seq1  AGACATAGTTGCAGTTACTAATAGGCTTGTGATTGGTAGTTTTTTTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGTTGCAGTTACTAATAGGCTTGTGATTGGTAGTTTTTTTATGA  200

seq1  CTATTTATTATGTCTATTATAGGAAATAATAGATACAACTTGAGAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTATGTCTATTATAGGAAATAATAGATACAACTTGAGAAATAA  250

seq1  TACATCACATTGAATTTGTGTGAAATAAATTTCAATTATTCTCAATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCACATTGAATTTGTGTGAAATAAATTTCAATTATTCTCAATTGTT  300

seq1  ATCTATTATCTTAATAATATATAATAAATCTTTTGAAATTATATGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTATCTTAATAATATATAATAAATCTTTTGAAATTATATGTAACA  350

seq1  TGTTAATAAGTTTATATTAGTATCCAAAATTAAATCTGTCCTGAGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAAGTTTATATTAGTATCCAAAATTAAATCTGTCCTGAGGATTA  400

seq1  AGAGTCTGATTTTAAAAAATGAATAATTTTAATACATTATTATAACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGATTTTAAAAAATGAATAATTTTAATACATTATTATAACTATT  450

seq1  CATAATATAAATAGTTTTATACAATTTGTGACAAATTGGTTATATGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATAAATAGTTTTATACAATTTGTGACAAATTGGTTATATGTTTT  500

seq1  TTCATGAAAATCAACTTTTATTTGTTCCTTAAAAATATAACCAATGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAAATCAACTTTTATTTGTTCCTTAAAAATATAACCAATGATTA  550

seq1  CAGAAAATGGACTAGTTGTGAAGATAGATTGATGAAAACAGTACAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGGACTAGTTGTGAAGATAGATTGATGAAAACAGTACAGAGTA  600

seq1  GGGAAACGGTCCTTGATGAGAGATTCTGTGAATGAAATTAGTATCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACGGTCCTTGATGAGAGATTCTGTGAATGAAATTAGTATCTGTGT  650

seq1  GTACTAGGGGTTAACAATTAATCAAACACCATTGCATGCTGGTCTGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGGGGTTAACAATTAATCAAACACCATTGCATGCTGGTCTGCAGG  700

seq1  AAAAGGCTAAGACAGCATGAATGCAGATTGATTTTCGCATGGTTGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTAAGACAGCATGAATGCAGATTGATTTTCGCATGGTTGTTTAG  750

seq1  TAAATTAACTCTTACTGTGTGCTAGGAAATGAAAAACGGCTGAAATCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTCTTACTGTGTGCTAGGAAATGAAAAACGGCTGAAATCAGG  800

seq1  ATACAATAGAAAAAAATCTTAAAAATAGTGAACATTAAAATAGCTACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATAGAAAAAAATCTTAAAAATAGTGAACATTAAAATAGCTACAGC  850

seq1  CACTTTTTTCTTAATTAGTCAAGAACCCCAGAAGTTACTCAGGGCCTGGA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACTTTTTTCTTAATTAGTCAAGAACCCCAGAAGTTACTCA-GGCCTGGA  899

seq1  GTGTAGA-TTTCTTTCTGTCTACACTTAGTGTACTTCAT-CACAGAGTGT  948
      ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
seq2  GTGTAGATTTTTTTTCTGTCTACACTTAGTGTACTTCATCCACAGAGTGT  949

seq1  CAGGATTGTTTTTCTAATCCATATTATATTTGTACAATAGAATATTAGCT  998
      ||||||||||||||| ||||||||||||||||||| ||||||||||||| 
seq2  CAGGATTGTTTTTCT-ATCCATATTATATTTGTAC-ATAGAATATTAGC-  996

seq1  TTTATAAACTTCTCTCAGTGGTGTCTCCATACAGAAATTACCATTACAAG  1048
      ||||||    ||||||||| |||| | ||||||| ||||| |||||| ||
seq2  TTTATA---CTCTCTCAGT-GTGT-TTCATACAG-AATTA-CATTAC-AG  1038

seq1  GGTCATCCTGGAGTTGATGGAGCACAGAACTAAAGTCACATGGTAGAGGG  1098
      |||||||   ||||||||||||||||| ||| ||||| |||| |||||| 
seq2  GGTCATC--TGAGTTGATGGAGCACAG-ACT-AAGTC-CATGTTAGAGG-  1082

seq1  ATACCTGGAGTTGTTTATGTCCACAAAACTATATCCAAAAATAATCTCAG  1148
        | |||||| || ||||||||   |||||   | |||||   ||||| |
seq2  --ATCTGGAG-TGGTTATGTCC---AAACT---TTCAAAA--TATCTC-G  1120

seq1  GAATGGAGTGGGCATAGAGTTTTATT  1174
      |||||||  ||||||||  || ||||
seq2  GAATGGA--GGGCATAGGTTTATATT  1144