BAC Information

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BAC

Clone NameB6Ng01-063H23
Chromosome16 (Build37)1 (Build37)
Map Location 26,221,019 - 26,221,349149,480,321 - 149,481,400
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5430420C16Rik, Trp63, LOC100043571, Leprel1
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063H23.bB6Ng01-063H23.g
ACCDH883574DH883575
length9331,076
definitionDH883574|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H23, 5' end.DH883575|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,221,019 - 26,221,349)(149,480,321 - 149,481,400)
sequence
gaattcttcctttccaatttgtaaccccttgatttccttttgttgtcaaa
tcgttctggctagaaattcaagtactatattgaataggtagggagaaagt
gggcagccttgtctagtccctgattttagagggattgtgttcagcttctc
tccatttactttgatgttggctattggttttctgtagattgcttttatca
tgtttaggtatggtccttgaattcctgatatttccatgacttttaacatg
aaggagtgttagatcttgtcaaatgctttctcagcatctaatgagatgat
cgtatgattttttgtctttgagtttgtttatatagtgaatcacagtgatg
taatatataaatctttataatctgtataataaatcttccatgcatccttg
ggatgaagcctacttggtcatgatgtgtgattgttttgatgtcttcttag
atttggtttgcaaggattttattgaatatttttgcattgatattcataag
ggaaattggtctgaagttctttttctttgttggatctttgtgtggtttag
gtgtcagggtaattgcggattcacagaatgaattgggtagcgtaccttct
atttctattttgtggaatagtttgaggagagttggaattaggtcttctct
gaaggtctgataaaactctacactaaacccttctgggcctgggctttttt
ttttttttttttggttgggagactattaatgactgcttctatttttcagg
agaaatgggactgttaagatacttaatctgatcatgatttaactttggta
cctggtatctgtctaagatgctgtccatttcatccagggtttccagtttt
gttaagtactagaagttcttgaatgatatatttagcattgaaatatatct
tattaaatttgctatttagtgtccaatttctgt
gaattcctggtcagtgcaacactatgcaaaattactaaagaaaagaggct
atccaaatgtctatcagaagataaatgaataaaaatgcaatatgtataaa
tattggagtactattcaacaacaacaaaaataagattgaaatttatagta
accgtggatggaatgaaaagtcattaactctagggaaataagccagctgt
acgaatagaagcatgcttggaaaataaatgatcaatcaaggggatttgtt
cactttatatccaatagcatcccccaacgatcggtcaaaggggtttcatg
ttataccagtgctttgtttcattccctaaataattatgtatcacttttgt
ggtttttaaactactttatggctactaattttaaagagagaattaacaaa
attcctgtcccttgttttatatcctgagaaattgtacatatcacttatat
aaacctgtctctcaaggagaatgaaatttaaactttagcacaaactaatt
taagcagttgtttaacttctacaaatttgatttcttcatttgctaaattg
tgcaaatgtaataaataacaagaaaacaataaagctaacaagcatgaagc
agtggggaaatggtatagggatttggtagcccatattagatagaatattc
ctgtaaacctgatgtttactcatttgtgattttgaacaatgtcttgtgat
tcttgctaataaacaaaatatataatagtgtttcttctgctgttaaggtg
ataaacagacagaacagctgtaaattttgtttcacagcatagatcaactg
acagcagctttggataagttggtattactaccagtttgttgttgttaaca
atcttctataataaaattaaataataattagaagaacaacagtgtttctg
actttctcttatagtgataattacaagtacttgctctatccaatctcaga
ctatctaatgacaagtagagattatgaaacaaagtttaagcataatatgg
tattggtacaatggacacagaacactcctaacaaagtaattttggagaaa
agaaaggtggcaggaaatagagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26221019_26221349
seq2: B6Ng01-063H23.b_51_379 (reverse)

seq1  TATATAAACAAACTCAAAGAC-AAAAACCACATGATCATCTCGTTAGATG  49
      ||||||||||||||||||||| ||||| || | ||||||||| |||||||
seq2  TATATAAACAAACTCAAAGACAAAAAATCATACGATCATCTCATTAGATG  50

seq1  CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTG  99
      | || |||||||||||||||||| ||||| | |||||| |||||||  ||
seq2  CTGAGAAAGCATTTGACAAGATCTAACACTCCTTCATGTTAAAAGTCATG  100

seq1  GAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTA  149
      |||| ||||||||||||||| | |||||||||||||||||||||||||||
seq2  GAAATATCAGGAATTCAAGGACCATACCTAAACATGATAAAAGCAATCTA  150

seq1  CAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA  199
      ||| |||||| |||||||||||||||||||||||||||||||| |  |||
seq2  CAGAAAACCAATAGCCAACATCAAAGTAAATGGAGAGAAGCTGAACACAA  200

seq1  TCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCCTCTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTA  250

seq1  TTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGA  299
      ||||| |||||||||||| |  |||||||| | ||| |||||||||||||
seq2  TTCAATATAGTACTTGAATTTCTAGCCAGAACGATTTGACAACAAAAGGA  300

seq1  GATCAAGGGGATACAAATTGGAAAAGAGGAAG  331
       ||||||||| ||||||||||||   ||||||
seq2  AATCAAGGGGTTACAAATTGGAA---AGGAAG  329

seq1: chr1_149480321_149481400
seq2: B6Ng01-063H23.g_69_1144

seq1  GAATTCCTGGTCAGTGCAACACTATGCAAAATTACTAAAGAAAAGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCAGTGCAACACTATGCAAAATTACTAAAGAAAAGAGGCT  50

seq1  ATCCAAATGTCTATCAGAAGATAAATGAATAAAAATGCAATATGTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATGTCTATCAGAAGATAAATGAATAAAAATGCAATATGTATAAA  100

seq1  TATTGGAGTACTATTCAACAACAACAAAAATAAGATTGAAATTTATAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGTACTATTCAACAACAACAAAAATAAGATTGAAATTTATAGTA  150

seq1  ACCGTGGATGGAATGAAAAGTCATTAACTCTAGGGAAATAAGCCAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGGATGGAATGAAAAGTCATTAACTCTAGGGAAATAAGCCAGCTGT  200

seq1  ACGAATAGAAGCATGCTTGGAAAATAAATGATCAATCAAGGGGATTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATAGAAGCATGCTTGGAAAATAAATGATCAATCAAGGGGATTTGTT  250

seq1  CACTTTATATCCAATAGCATCCCCCAACGATCGGTCAAAGGGGTTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATATCCAATAGCATCCCCCAACGATCGGTCAAAGGGGTTTCATG  300

seq1  TTATACCAGTGCTTTGTTTCATTCCCTAAATAATTATGTATCACTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCAGTGCTTTGTTTCATTCCCTAAATAATTATGTATCACTTTTGT  350

seq1  GGTTTTTAAACTACTTTATGGCTACTAATTTTAAAGAGAGAATTAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAAACTACTTTATGGCTACTAATTTTAAAGAGAGAATTAACAAA  400

seq1  ATTCCTGTCCCTTGTTTTATATCCTGAGAAATTGTACATATCACTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTCCCTTGTTTTATATCCTGAGAAATTGTACATATCACTTATAT  450

seq1  AAACCTGTCTCTCAAGGAGAATGAAATTTAAACTTTAGCACAAACTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTCTCTCAAGGAGAATGAAATTTAAACTTTAGCACAAACTAATT  500

seq1  TAAGCAGTTGTTTAACTTCTACAAATTTGATTTCTTCATTTGCTAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTTGTTTAACTTCTACAAATTTGATTTCTTCATTTGCTAAATTG  550

seq1  TGCAAATGTAATAAATAACAAGAAAACAATAAAGCTAACAAGCATGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGTAATAAATAACAAGAAAACAATAAAGCTAACAAGCATGAAGC  600

seq1  AGTGGGGAAATGGTATA-GGATTTGGTAG-CCATATTAGATAGAATATTC  648
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  AGTGGGGAAATGGTATAGGGATTTGGTAGCCCATATTAGATAGAATATTC  650

seq1  CTGTAAACCTGATGTTTACTCATTTGTGATTTTGAACAATGTCTTGTGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACCTGATGTTTACTCATTTGTGATTTTGAACAATGTCTTGTGAT  700

seq1  TCTTGCTAATAAACAAAATATATAATAGTGTTTCCTTCTGCTGTTAAGGT  748
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTTGCTAATAAACAAAATATATAATAGTGTTT-CTTCTGCTGTTAAGGT  749

seq1  GATAAACAGACAGAACAGCTGTAAATTTTGTTTCACAGCATAGATCAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAGACAGAACAGCTGTAAATTTTGTTTCACAGCATAGATCAACT  799

seq1  GACAGCAGCTTTGGATAAGTTGGTATTACTACCAGTTTTGTTGTTGTTAA  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACAGCAGCTTTGGATAAGTTGGTATTACTACCAG-TTTGTTGTTGTTAA  848

seq1  CAATCTTCTATAATAAAATTAAATAATAATTAGAAGAACAACAGTGTTTT  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAATCTTCTATAATAAAATTAAATAATAATTAGAAGAACAACAGTG-TTT  897

seq1  CTGACTTTCTCTTATAGTGGATAATTACAAGTACCTGCTCTATCCAATCT  948
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  CTGACTTTCTCTTATAGT-GATAATTACAAGTACTTGCTCTATCCAATCT  946

seq1  CAGACTATCTAATGACAAGTAGAGATTCTTGACACAAAGTTTAAGCATAA  998
      |||||||||||||||||||||||||||  ||| |||||||||||||||||
seq2  CAGACTATCTAATGACAAGTAGAGATT-ATGAAACAAAGTTTAAGCATAA  995

seq1  TAT-GTATTGTTACAATGGACACAGAACAACTCCTAACAAAGTAATTCTG  1047
      ||| |||||| ||||||||||||||||| |||||||||||||||||| ||
seq2  TATGGTATTGGTACAATGGACACAGAAC-ACTCCTAACAAAGTAATTTTG  1044

seq1  GAGAAAAGAAAGGTGGCAGGAAATAAGAGTAAT  1080
      |||||||||||||||||||||||| ||||||||
seq2  GAGAAAAGAAAGGTGGCAGGAAAT-AGAGTAAT  1076