BAC Information

Click to search

BAC

Clone NameB6Ng01-063I12
Chromosome16 (Build37)3 (Build37)
Map Location 61,274,338 - 61,274,51141,059,222 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream geneLOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063I12.bB6Ng01-063I12.g
ACCDH883597DH883598
length948973
definitionDH883597|Mus musculus domesticus DNA, BAC clone: B6Ng01-063I12, 5' end.DH883598|Mus musculus domesticus DNA, BAC clone: B6Ng01-063I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,274,338 - 61,274,511)(41,059,222 - 41,059,737)
sequence
gaattctctgggcttcttatatgttcatgggaatttctttctttaggtat
tggaagttttcttctataactttgttgaagatatttgctggccttttaag
ttgagaatcttcattctcatctactattatccataggtttggtcttctca
ttgtgtcctggatttcctgaatgttttgagttgggatctttttgcatttt
ccattttctttgattgttgtgttcatgttacctatggaatcttctgcatc
tgagattctctcttctatctcttgtattctcttgatgatgctcacatcta
tgtttcctgatatctttcctaggatttttatctccagagttgtttccctt
taggttttcttcattgtttctacttctatttttacatcttggattttttt
ttattcaattccatcatctgtttggttgtgttttcctgtaattctttacg
ggatttttgtgtttcttctatcagcttagcagtgtttacctgtagttctt
taaagacttgtacttgtttagcagtgttctcctgtaattccttgagggat
ttctgtgcttcctctttaagggcttgtaccggtttagcagtgttctcctg
taattccttgagggatttctgtgcttcctctttaagggcttctaactgtt
tagccgtgttctcctgtatttctttaagtaagttattaatgtacatccta
aaatcttctaccaccatcaagagatatgattttaaatccaagtcttgctt
gtcgggtgtgttggggtatccaggactttctgtggtgggcttactggatt
ctgatgatgcccattgttcttggtttatgttagtaagatttttaccattg
cctctcgccattaggtaatctctggtgttaatgttcaagctgtctctggc
tggagcttggtcctcctgtgattctgttagcctctgtcagcactcctg
gaattctttgtttagctctgagacccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggatagacaaagatcctttcctaatctgttggtggcct
ttttgtctttttgaaggtgtctttttccttgcagaacctttgcagtttta
tgaggtcccatttgtcaattctcaatcttacagcacaatccattgctgtt
tttctcagtaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtataaggagataggaatcgatcaattcac
attcttctacatgataaccaccagttgtgccagcaccctttgttgagaat
gctgtcttttctccactggatggttttagctcccttgttgaagatcaagt
gacaataggtttgtgggttcatttctgggtcttcaattctattccattgg
tctacttgactgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtgcagctttaagtcaggcatggtgattccaccagaggttcttt
tatccttgagaaaagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatgggggttgcattgaatctgtagattgcttttggcaagatagccactt
ttacaatgttgatcctgccagtcccagagcatgggagatcttcccacttc
tgagatcttctttaatttctttcttcagagacttgaagtcttatcataca
gatctttcacttccttatttagagtcacgccagtatttatattatttgtg
actatcagacggtatgtttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_61274338_61274511
seq2: B6Ng01-063I12.b_56_226 (reverse)

seq1  ACTCGAAACATCCAGGAAATCCAGGACACAATGACAAGACCAAACCTATG  50
      |||| |||||| |||||||||||||||||||||| |||||||||||||||
seq2  ACTCAAAACATTCAGGAAATCCAGGACACAATGAGAAGACCAAACCTATG  50

seq1  GATAATAGGAGTAGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAA  100
      ||||||   |||||||||||||||||||| |||||| ||| | |||||||
seq2  GATAAT---AGTAGATGAGAATGAAGATTCTCAACTTAAAAGGCCAGCAA  97

seq1  ATATGTTCAACAAAATTATAGAAGAAAACTTCCCAAACCTAAAGAAAGAG  150
      |||| ||||||||| |||||||||||||||||| | ||||||||||||| 
seq2  ATATCTTCAACAAAGTTATAGAAGAAAACTTCCAATACCTAAAGAAAGAA  147

seq1  ATGCCCATGAACATACAAGAAGCC  174
      || |||||||||||| ||||||||
seq2  ATTCCCATGAACATATAAGAAGCC  171

seq1: chr3_41059222_41059737
seq2: B6Ng01-063I12.g_70_586 (reverse)

seq1  ATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      | ||||| |||||| |||||||||||||| ||||||||||||||||||||
seq2  ACCCACAAACCTATTGTCACTTGATCTTCAACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTT  100
      ||||||| ||||||||||||| |||||||| |||||||||||||||||| 
seq2  CAGTGGAGAAAAGACAGCATTCTCAACAAAGGGTGCTGGCACAACTGGTG  100

seq1  GTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTA  150
      ||||||||||||||||||| ||||||||| | |||||||||||| |||||
seq2  GTTATCATGTAGAAGAATGTGAATTGATCGATTCCTATCTCCTTATACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGG  250
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGG  250

seq1  GGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAA  300
      ||||||||| |||   | ||||||||||| ||||||||||||||||||||
seq2  GGAAAAATTACTGAGAAAAACAGCAATGGATTGTGCTGTAAGATTGAGAA  300

seq1  TAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  350
      | ||||||||||||||||| ||||||||||| |||||||||| |||||||
seq2  TTGACAAATGGGACCTCATAAAACTGCAAAGGTTCTGCAAGGAAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTAC  399
      ||| |||| |||||||||||| |||||||||||| |||||||||||||  
seq2  ACCTTCAAAAAGACAAAAAGGCCACCAACAGATTAGGAAAGGATCTTTGT  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCA  449
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCA  450

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  499
      |||||||||| | |||||||||||||||||||||||||||||||| ||||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGTCTCA  500

seq1  GAGCTAAACAAAGAATT  516
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  517