BAC Information

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BAC

Clone NameB6Ng01-063N06
Chromosome16 (Build37)
Map Location 6,116,412 - 6,208,937
singlet/doubletdoublet
Overlap geneA2bp1
Upstream genePpl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063N06.bB6Ng01-063N06.g
ACCDH883802DH883803
length1,150864
definitionDH883802|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N06, 5' end.DH883803|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,116,412 - 6,117,586)(6,208,070 - 6,208,937)
sequence
gaattctccatgaccacatcacctctctgcccctctctctccataagctg
cacactccttttgcctctgagaacattctgtcttcctcccctcccccaca
gaactgtggctccataacaaatttactctttcgtagggagttttttagtg
tcatctaatgttcattatagagcaaagacttcattgttgttcaacttttt
aagaatcctatatgaacatgcaatgtattctagccagtgaaactagagag
agagaaacaggttacttctaacttggaaatttaatgaaccaatcaatgac
tccagacttctgtgacgagaacagagagtcagttctgtgtcactttgagc
catgtagagaatctgataaagaagaccccaatggaacaataactcaagtc
agaaattcgcctttgttgttacctggctccaagattatggggttatttgt
tacttagtaaacctagcccatctctgtgggctcacctaaaaatggcagct
gcttccaggtgaagtcaatggtgttagaagcatcccagtggctccgagga
atgaagacgcatgtatgagattgaagccatggctgtggtagattctaatt
gggatctaaagaaccaaaggcagaaacaaagcatggggcagtggtgagaa
gagtttcagaagcctcagagccagaggagtacgcagcaatggcagtgccc
atcggctgccctcacggaaccccacagtgctcacactcacaaggtagggc
caccttttccgcaaacaccttgaatctatccttcttaatgatgtgttcaa
ataagcactctcctgtttcccaaagactccagtcccaggaccagtctggt
gctactgatgccctttcttatggatgagggtgtttttaggtttctatctc
cttgcgatataaagaatcttcccataaaaatttccagtcccctccccatc
tctccagcagtaggaacaaatctaagtgcacacatgttagcaagtgctct
acactggcctatagcacagctttcatttaactttgttatcatttttcgcc
aggatctcctctgcagctcgggctgctcatcattcgtagcagacaagtct
tgactttggatccatgcctcagcactgaatggctggtgaggctttgttaa


gaattcttttgatcattgataagatggttatttgatgaatgtgtctatac
accctctagcttgtgcctactctcttgctgacaccagggatctggaactg
aaggtgaatggattccagctaaaagtactcatgacagcatattggaggta
cagtggctacctgagctgccttccaaatagctctaacatccaaatgggaa
aaaacaacttagaattaataagttagataagaaaagaactgaggagctag
cctgtgagatccctgggttcttcctaaagtgaggtttcatgcaagcatat
aacattctttgagtatagtctcctatccaccactatccttctctttgctc
cttcccttcccattagcccctttgttgccatagacttctttactacatat
ttaggttatttgtacacacaagattatatgaatcgatataaaatctggag
aaaatgtgtgatatttttctgtgtgagactaactcgattcatttcataag
atgctctctagttcaacctactccccagcaaatgacaaagcttcatttct
ccttctggctaaagaaattcacacacacacacacacacacacacacacac
acacacacacacaccacattttgttatatgtgtttgtcatatgtattaat
tatcatttgccagacatctaggttgcttctacaactttgctattgtgaac
attgctgcatcatttatacaatgattgcaggaggggagtcacataccatc
caccccacctcatctgcctgtattcctctactctattcaacagctctcct
gatctgtcaggtaaaaatcagaaagaaattaagaaagaaaacgagagaga
gagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6116412_6117586
seq2: B6Ng01-063N06.b_47_1196

seq1  GAATTCTCCATGACCACATCACCTCTCTGCCCCTCTCTCTCCATAAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGACCACATCACCTCTCTGCCCCTCTCTCTCCATAAGCTG  50

seq1  CACACTCCTTTTGCCTCTGAGAACATTCTGTCTTCCTCCCCTCCCCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTTTTGCCTCTGAGAACATTCTGTCTTCCTCCCCTCCCCCACA  100

seq1  GAACTGTGGCTCCATAACAAATTTACTCTTTCGTAGGGAGTTTTTTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGGCTCCATAACAAATTTACTCTTTCGTAGGGAGTTTTTTAGTG  150

seq1  TCATCTAATGTTCATTATAGAGCAAAGACTTCATTGTTGTTCAACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAATGTTCATTATAGAGCAAAGACTTCATTGTTGTTCAACTTTTT  200

seq1  AAGAATCCTATATGAACATGCAATGTATTCTAGCCAGTGAAACTAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCTATATGAACATGCAATGTATTCTAGCCAGTGAAACTAGAGAG  250

seq1  AGAGAAACAGGTTACTTCTAACTTGGAAATTTAATGAACCAATCAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAGGTTACTTCTAACTTGGAAATTTAATGAACCAATCAATGAC  300

seq1  TCCAGACTTCTGTGACGAGAACAGAGAGTCAGTTCTGTGTCACTTTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTTCTGTGACGAGAACAGAGAGTCAGTTCTGTGTCACTTTGAGC  350

seq1  CATGTAGAGAATCTGATAAAGAAGACCCCAATGGAACAATAACTCAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAGAATCTGATAAAGAAGACCCCAATGGAACAATAACTCAAGTC  400

seq1  AGAAATTCGCCTTTGTTGTTACCTGGCTCCAAGATTATGGGGTTATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCGCCTTTGTTGTTACCTGGCTCCAAGATTATGGGGTTATTTGT  450

seq1  TACTTAGTAAACCTAGCCCATCTCTGTGGGCTCACCTAAAAATGGCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTAAACCTAGCCCATCTCTGTGGGCTCACCTAAAAATGGCAGCT  500

seq1  GCTTCCAGGTGAAGTCAATGGTGTTAGAAGCATCCCAGTGGCTCCGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGGTGAAGTCAATGGTGTTAGAAGCATCCCAGTGGCTCCGAGGA  550

seq1  ATGAAGACGCATGTATGAGATTGAAGCCATGGCTGTGGTAGATTCTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACGCATGTATGAGATTGAAGCCATGGCTGTGGTAGATTCTAATT  600

seq1  GGGATCTAAAGAACCAAAGGCAGAAACAAAGCATGGGGCAGTGGTGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTAAAGAACCAAAGGCAGAAACAAAGCATGGGGCAGTGGTGAGAA  650

seq1  GAGTTTCAGAAGCCTCAGAGCCAGAGGAGTACGCAGCAATGGCAGTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAGAAGCCTCAGAGCCAGAGGAGTACGCAGCAATGGCAGTGCCC  700

seq1  ATCGGCTGCCCTCACGGAACCCCACAGTGCTCACACTCACAAGGTAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCTGCCCTCACGGAACCCCACAGTGCTCACACTCACAAGGTAGGGC  750

seq1  CACCTTTTCCGCAAACACCTTGAATCTATCCTTCTTAATGATGTGTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTCCGCAAACACCTTGAATCTATCCTTCTTAATGATGTGTTCAA  800

seq1  ATAAGCACTCTCCTGTTTCCCAAAGACTCCAGTCCCAGGACCAGTCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACTCTCCTGTTTCCCAAAGACTCCAGTCCCAGGACCAGTCTGGT  850

seq1  GCTACTGATGCCCTTTCTTATGGATGAGGGTGTTTTTAGGTTTTCTATCT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTACTGATGCCCTTTCTTATGGATGAGGGTGTTTTTAGG-TTTCTATCT  899

seq1  CCTTGCGATATTAAAGAATCTTCCCATAAAAATTTCCAGTCCCCCTCCCC  950
      |||||||||| |||||||||||||||||||||||||||||||||   |||
seq2  CCTTGCGATA-TAAAGAATCTTCCCATAAAAATTTCCAGTCCCC--TCCC  946

seq1  CATCTCTCCAGCAGTAGGAACAAATCTAAATGGCACACATGTTAAGCAAG  1000
      ||||||||||||||||||||||||||||| | ||||||||||| ||||||
seq2  CATCTCTCCAGCAGTAGGAACAAATCTAAGT-GCACACATGTT-AGCAAG  994

seq1  TGCTCTACCACTGGCCTATAGCCACAGCTTTCATTTAACTTTGTAATCAA  1050
      ||||||| ||||||||||||| |||||||||||||||||||||| ||| |
seq2  TGCTCTA-CACTGGCCTATAG-CACAGCTTTCATTTAACTTTGTTATC-A  1041

seq1  TTTTTCGCCAGGATCTCCCTCTGCAGCTCGGGCTGGCCTTCAATCATTCC  1100
      |||||||||||||||| ||||||||||||||||||  |    |||||| |
seq2  TTTTTCGCCAGGATCT-CCTCTGCAGCTCGGGCTGCTC----ATCATT-C  1085

seq1  GTAGCCCAGACAGGTCTTGAACTTGTGATCCCATTGCCTCAGCCACCTGA  1150
      ||||  |||||| |||||| ||||  |||||   |||||||||   ||||
seq2  GTAG--CAGACAAGTCTTG-ACTTTGGATCC--ATGCCTCAGC--ACTGA  1128

seq1  GTTGCCTGGATGAGGCTTTTGTTAA  1175
        || |||| |||||| ||||||||
seq2  -ATGGCTGG-TGAGGC-TTTGTTAA  1150


seq1: chr16_6208070_6208937
seq2: B6Ng01-063N06.g_68_931 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTTTTTCTTTCTTTATTTCTTTCTTGATT  50
      |||||||||||||||||||||| ||||||||||| ||||||||| ||| |
seq2  TCTCTCTCTCTCTCTCTCTCTCGTTTTCTTTCTTAATTTCTTTC-TGA-T  48

seq1  TTTTACCTGACAGATCAGGAGAGCTGTTGAATAGAGTAGAGGAATTACAG  100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTACCTGACAGATCAGGAGAGCTGTTGAATAGAGTAGAGGAA-TACAG  97

seq1  GCAGATGAGGTGGGGTGGATGGTATGTGACTCCCCTCCTGCAATCATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAGGTGGGGTGGATGGTATGTGACTCCCCTCCTGCAATCATTGT  147

seq1  ATAAATGATTGCAGCAATGTTCACAATAGCAAAGTTGTAGAAGCAACCTA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGA-TGCAGCAATGTTCACAATAGCAAAGTTGTAGAAGCAACCTA  196

seq1  GATGTCTGGCAAATGATAATTAATACATATGACAAACACATATAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGGCAAATGATAATTAATACATATGACAAACACATATAACAAAA  246

seq1  TGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA  296

seq1  ATTTCTTTAGCCAGAAGGAGAAATGAAGCTTTGTCATTTGCTGGGGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAGCCAGAAGGAGAAATGAAGCTTTGTCATTTGCTGGGGAGTA  346

seq1  GGTTGAACTAGAGAGCATCTTATGAAATGAATCGAGTTAGTCTCACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAACTAGAGAGCATCTTATGAAATGAATCGAGTTAGTCTCACACAG  396

seq1  AAAAATATCACACATTTTCTCCAGATTTTATATCGATTCATATAATCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCACACATTTTCTCCAGATTTTATATCGATTCATATAATCTTG  446

seq1  TGTGTACAAATAACCTAAATATGTAGTAAAGAAGTCTATGGCAACAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAAATAACCTAAATATGTAGTAAAGAAGTCTATGGCAACAAAGG  496

seq1  GGCTAATGGGAAGGGAAGGAGCAAAGAGAAGGATAGTGGTGGATAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGGGAAGGGAAGGAGCAAAGAGAAGGATAGTGGTGGATAGGAGA  546

seq1  CTATACTCAAAGAATGTTATATGCTTGCATGAAACCTCACTTTAGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCAAAGAATGTTATATGCTTGCATGAAACCTCACTTTAGGAAGA  596

seq1  ACCCAGGGATCTCACAGGCTAGCTCCTCAGTTCTTTTCTTATCTAACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGATCTCACAGGCTAGCTCCTCAGTTCTTTTCTTATCTAACTTA  646

seq1  TTAATTCTAAGTTGTTTTTTCCCATTTGGATGTTAGAGCTATTTGGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTAAGTTGTTTTTTCCCATTTGGATGTTAGAGCTATTTGGAAGG  696

seq1  CAGCTCAGGTAGCCACTGTACCTCCAATATGCTGTCATGAGTACTTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGTAGCCACTGTACCTCCAATATGCTGTCATGAGTACTTTTAG  746

seq1  CTGGAATCCATTCACCTTCAGTTCCAGATCCCTGGTGTCAGCAAGAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCCATTCACCTTCAGTTCCAGATCCCTGGTGTCAGCAAGAGAGT  796

seq1  AGGCACAAGCTAGAGGGTGTATAGACACATTCATCAAATAACCATCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAGCTAGAGGGTGTATAGACACATTCATCAAATAACCATCTTAT  846

seq1  CAATGATCAAAAGAATTC  868
      ||||||||||||||||||
seq2  CAATGATCAAAAGAATTC  864


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