BAC Information

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BAC

Clone NameB6Ng01-064L21
Chromosome16 (Build37)
Map Location 88,477,209 - 88,603,870
singlet/doubletdoublet
Overlap geneCldn17, Cldn8
Upstream geneUsp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1, EG622373
Downstream geneGm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064L21.bB6Ng01-064L21.g
ACCDH884437DH884438
length9381,067
definitionDH884437|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L21, 5' end.DH884438|Mus musculus domesticus DNA, BAC clone: B6Ng01-064L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,602,927 - 88,603,870)(88,477,209 - 88,478,278)
sequence
gaattcttacacactgaagacaatagcaggactctaaacaatgtcattcc
atttcaaagtgcttaaaatccaaatagtgagtaatagtgttttcagaacc
cttagtaacttgtttactggtataaatcaactgctcatcaattaagagat
caataaaaagtatccagtttgtacagatacatggaatacaacaagaatat
actcatcatgaaaagcacttgctgtgtatagtatatcacatgagaacact
tcattctctcacatccttttttctgctatgcttatcacatacacgaagtg
aattgaacatgaaattggaaaatagtcacacaatataaacacgctcttat
gttttttgagtctaatgtaacaagaagaacaaatgatgaaaacaagcatc
tgaagagattgcaaatcaaatcccacttccacccctggtcctccagcatc
acatctcaccattcactcttctgatgataccttaaaataaggaaattgaa
agaatgaggcaaaaaccagtattgggaacatacaattttttttttctggc
aaagacattctcccaaggagctgaaccatgtgaatttacactcttcagtg
tgtagagaaaagaccacatttgttttttttttttttaggataagtttgta
gaacagtaaagtgtagaaaatgtacatctgatcctgtgtctatttaatac
caacagcctaagggggaaaatatacagatacaaactgtcaaaggagaact
ttaacttgaaataacatatccctggacttaaacctgggaatacaagtaca
tattattaccactagctagaaggatcacatggaaataatgagaggtgtga
gagagggaggaggaaatgagggcaaatataaagagcagaccaagtggaag
ggaatgacaggattaaaagaggagagggggagggggaa
gaattccaggaccccagtaatccttttgatgatctctttgtctcaaacat
taaatcctttcttcctgtccacagcttaaaatacatacctgagctaacat
caaaaaagatgttaggtttagggttgaggttacagttctaaatacagtct
gtttaaaaaaaatattgtttgtgtgccataaacggcagagtatagaatgg
tttatagtctttgttaatcagaagagaaggggagtggagatggaaggagg
gacactgtgagggagggactgggaagggagcagcatttggaatgtgaatt
aactaactaactaaataattaatttcgaaaatggaaaaaacaaacaaaca
aacaaaacaaacaaaaacaaaacctagcaaggctgattttacttaccaga
ccctggagttccataattaactcccatctttttctaccttccttatgttg
tacatcaatatgacttttctcttgtgtccaatgctgctgtattcttccaa
gtatgcttccatgtgaacaggtggtatcttaagccccatttttgtatatg
gtgtccaaacttacataaatctaaagataaggatctcatggagcagatgt
ctgtctcccaaagattttttctgataaccccctctctagagaatggagtg
cacatagtaggactggtaaaaacaagtgccacagatgtggagtgcatgtt
ctatcttccacagagcccttcctttgggcaaagaccaaggtacatattac
ttcaataacgtaatgtcaccctctaaggtaccccttgctgtctggccttc
tggtagacttaaaaacccaccatttggggctggagagatggctcagtggt
taagaagcacttgactgctttttccaaagttctgagttcaaatcccagca
acaacatggtggctcacaaccaccagtatgagatcttgtcaccttctttg
gcagtgtctgaagacagctacagtgtatttatattaataattaaataaat
ctttgggcctggagcagcagggactgagcagtgagtggacctgagcacaa
aattccaaattcatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88602927_88603870
seq2: B6Ng01-064L21.b_49_986 (reverse)

seq1  TTCCCCCTCCCCCTCTCCCTCTTTTAATCCTGTCATTTCCCTTCCACTTG  50
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TTCCCCCTCCCCCTCT-CCTCTTTTAATCCTGTCA-TTCCCTTCCACTTG  48

seq1  GTCTTGCTCTTTTATATTTGCCCTCATTTCCTCCTCCCTCTCTCACAACC  100
      ||| ||||| |||||||||||||||||||||||||||||||||||| |||
seq2  GTC-TGCTC-TTTATATTTGCCCTCATTTCCTCCTCCCTCTCTCAC-ACC  95

seq1  TCTCATTATTTCCATGTGATCCTTCTAGCTAGTGGTAATAATATGTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCATTATTTCCATGTGATCCTTCTAGCTAGTGGTAATAATATGTA-CT  144

seq1  TGTATTCCCAGGTTTAAGTCCAGGGATATGTTATTTCAAGTTAAAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCCAGGTTTAAGTCCAGGGATATGTTATTTCAAGTTAAAGTTCT  194

seq1  CCTTTGACAGTTTGTATCTGTATATTTTCCCCCTTAGGCTGTTGGTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACAGTTTGTATCTGTATATTTTCCCCCTTAGGCTGTTGGTATTA  244

seq1  AATAGACACAGGATCAGATGTACATTTTCTACACTTTACTGTTCTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACACAGGATCAGATGTACATTTTCTACACTTTACTGTTCTACAAA  294

seq1  CTTATCCTAAAAAAAAAAAAAACAAATGTGGTCTTTTCTCTACACACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTAAAAAAAAAAAAAACAAATGTGGTCTTTTCTCTACACACTGA  344

seq1  AGAGTGTAAATTCACATGGTTCAGCTCCTTGGGAGAATGTCTTTGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTAAATTCACATGGTTCAGCTCCTTGGGAGAATGTCTTTGCCAGA  394

seq1  AAAAAAAAATTGTATGTTCCCAATACTGGTTTTTGCCTCATTCTTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTGTATGTTCCCAATACTGGTTTTTGCCTCATTCTTTCAAT  444

seq1  TTCCTTATTTTAAGGTATCATCAGAAGAGTGAATGGTGAGATGTGATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATTTTAAGGTATCATCAGAAGAGTGAATGGTGAGATGTGATGCT  494

seq1  GGAGGACCAGGGGTGGAAGTGGGATTTGATTTGCAATCTCTTCAGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCAGGGGTGGAAGTGGGATTTGATTTGCAATCTCTTCAGATGCT  544

seq1  TGTTTTCATCATTTGTTCTTCTTGTTACATTAGACTCAAAAAACATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATCATTTGTTCTTCTTGTTACATTAGACTCAAAAAACATAAGA  594

seq1  GCGTGTTTATATTGTGTGACTATTTTCCAATTTCATGTTCAATTCACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTTATATTGTGTGACTATTTTCCAATTTCATGTTCAATTCACTTC  644

seq1  GTGTATGTGATAAGCATAGCAGAAAAAAGGATGTGAGAGAATGAAGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGATAAGCATAGCAGAAAAAAGGATGTGAGAGAATGAAGTGTT  694

seq1  CTCATGTGATATACTATACACAGCAAGTGCTTTTCATGATGAGTATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGATATACTATACACAGCAAGTGCTTTTCATGATGAGTATATTC  744

seq1  TTGTTGTATTCCATGTATCTGTACAAACTGGATACTTTTTATTGATCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTATTCCATGTATCTGTACAAACTGGATACTTTTTATTGATCTCT  794

seq1  TAATTGATGAGCAGTTGATTTATACCAGTAAACAAGTTACTAAGGGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATGAGCAGTTGATTTATACCAGTAAACAAGTTACTAAGGGTTCT  844

seq1  GAAAACACTATTACTCACTATTTGGATTTTAAGCACTTTGAAATGGAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACTATTACTCACTATTTGGATTTTAAGCACTTTGAAATGGAATG  894

seq1  ACATTGTTTAGAGTCCTGCTATTGTCTTCAGTGTGTAAGAATTC  944
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTTAGAGTCCTGCTATTGTCTTCAGTGTGTAAGAATTC  938

seq1: chr16_88477209_88478278
seq2: B6Ng01-064L21.g_68_1133

seq1  GAATTCCAGGACCCCAGTAATCCTTTTGATGATCTCTTTGTCTCAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACCCCAGTAATCCTTTTGATGATCTCTTTGTCTCAAACAT  50

seq1  TAAATCCTTTCTTCCTGTCCACAGCTTAAAATACATACCTGAGCTAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTTTCTTCCTGTCCACAGCTTAAAATACATACCTGAGCTAACAT  100

seq1  CAAAAAAGATGTTAGGTTTAGGGTTGAGGTTACAGTTCTAAATACAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGATGTTAGGTTTAGGGTTGAGGTTACAGTTCTAAATACAGTCT  150

seq1  GTTTAAAAAAAATATTGTTTGTGTGCCATAAACGGCAGAGTATAGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAAAATATTGTTTGTGTGCCATAAACGGCAGAGTATAGAATGG  200

seq1  TTTATAGTCTTTGTTAATCAGAAGAGAAGGGGAGTGGAGATGGAAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTCTTTGTTAATCAGAAGAGAAGGGGAGTGGAGATGGAAGGAGG  250

seq1  GACACTGTGAGGGAGGGACTGGGAAGGGAGCAGCATTTGGAATGTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTGAGGGAGGGACTGGGAAGGGAGCAGCATTTGGAATGTGAATT  300

seq1  AACTAACTAACTAAATAATTAATTTCGAAAATGGAAAAAACAAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAACTAAATAATTAATTTCGAAAATGGAAAAAACAAACAAACA  350

seq1  AACAAAACAAACAAAAACAAAACCTAGCAAGGCTGATTTTACTTACCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAACAAAAACAAAACCTAGCAAGGCTGATTTTACTTACCAGA  400

seq1  CCCTGGAGTTCCATAATTAACTCCCATCTTTTTCTACCTTCCTTATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGTTCCATAATTAACTCCCATCTTTTTCTACCTTCCTTATGTTG  450

seq1  TACATCAATATGACTTTTCTCTTGTGTCCAATGCTGCTGTATTCTTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAATATGACTTTTCTCTTGTGTCCAATGCTGCTGTATTCTTCCAA  500

seq1  GTATGCTTCCATGTGAACAGGTGGTATCTTAAGCCCCATTTTTGTATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTCCATGTGAACAGGTGGTATCTTAAGCCCCATTTTTGTATATG  550

seq1  GTGTCCAAACTTACATAAATCTAAAGATAAGGATCTCATGGAGCAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAACTTACATAAATCTAAAGATAAGGATCTCATGGAGCAGATGT  600

seq1  CTGTCTCCC-AAGATTTTTTCTGATAACCCCCTCTCTAGAGAATGGAGTG  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCCAAAGATTTTTTCTGATAACCCCCTCTCTAGAGAATGGAGTG  650

seq1  CACATAGTAGGACTGGTAAAAACAAGTGCCACAGATGTGGAGTGCATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTAGGACTGGTAAAAACAAGTGCCACAGATGTGGAGTGCATGTT  700

seq1  CTATCTTCCACAGAGCCCTTCCCTTTGGGCAAAGACCAAGGTACATATTA  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTATCTTCCACAGAGCCCTT-CCTTTGGGCAAAGACCAAGGTACATATTA  749

seq1  CTTCAATAACGTAATGTCACCCTCTAAGGTACCCCTTGCTGTCT-GCCAT  798
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  CTTCAATAACGTAATGTCACCCTCTAAGGTACCCCTTGCTGTCTGGCCTT  799

seq1  CTGGTAGACTTAAAGAACCCACCATTT-GGGCTGGAGAGATGGCTCAGTG  847
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  CTGGTAGACTTAAA-AACCCACCATTTGGGGCTGGAGAGATGGCTCAGTG  848

seq1  GTTAAG-AGCAC-TGACTGCTTTTTCCAAAGGTCCTGAGTTCAAATCCCA  895
      |||||| ||||| ||||||||||||||||| || ||||||||||||||||
seq2  GTTAAGAAGCACTTGACTGCTTTTTCCAAA-GTTCTGAGTTCAAATCCCA  897

seq1  GCAACCACATGGTGGCTCACAACCACCAGTAATGAGATC-TGTCACCCTC  944
      ||||| |||||||||||||||||||||||| |||||||| ||||||| ||
seq2  GCAACAACATGGTGGCTCACAACCACCAGT-ATGAGATCTTGTCACCTTC  946

seq1  TTTGGCTGTGTCTGAAGACAGCTACAGTGTATTTATATATAATAA-TAAA  993
      |||||| ||||||||||||||||||||||||||||||| |||||| ||||
seq2  TTTGGCAGTGTCTGAAGACAGCTACAGTGTATTTATAT-TAATAATTAAA  995

seq1  TAAATCTTTGGGCCTGGAGCGAGCAGGGACTGAGCGAGTGGGGTTGACCT  1043
      |||||||||||||||||||| |||||||||||||| ||| | || |||||
seq2  TAAATCTTTGGGCCTGGAGC-AGCAGGGACTGAGC-AGT-GAGTGGACCT  1042

seq1  GAGCAAGCAGAATTCCAAAATTCATTT  1070
      |||||  || |||||| ||||||||||
seq2  GAGCA--CAAAATTCC-AAATTCATTT  1066