BAC Information

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BAC

Clone NameB6Ng01-065A24
Chromosome16 (Build37)
Map Location 60,492,206 - 60,493,259
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneBC043118, LOC672884, Arl6, LOC100043804
Downstream geneEG668168, LOC668170, LOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065A24.bB6Ng01-065A24.g
ACCDH884656DH884657
length1,0511,041
definitionDH884656|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A24, 5' end.DH884657|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgttttgaataggtgaatggtactccattgtgtagatgtacc
acattttctgtatccattcctctgttgagggacatctgggctctttccag
cttctggctattataaataaggctgctatgaacatagtgtaacatgtgtc
ctattacaagttggaatatcttctgggtatatgcccaggagaggaattgc
tggatcttttggtagtactatgtccagttttctgaggaaccgccagactg
atttccagagtggttgtacaagcttgcaatcttatcaacaatggaggagt
gttcttctttctccacaatcttgccagcatctgctgtcacttgaattttt
gatcttagccattctgattggtgtgaggtggaatctcagggtacttttga
tctgcatttttctgatgattaaggatgttgtacatttttttcaggtgctt
ctcagccattcattattcctcagttgagaattctttgtttagctctgtac
cccgttttttaatagtgttatttgattttctggattccatcttcttgagt
tctttatatatattggatattagtcccctatctgattttaggattggtaa
agatcctttcccaatctgttgggtgacctttttgcattattgacaatgtc
ttttgccttccagaagccttgcaattttatgaggtcccatttgttgattt
tcaatcttacagcacaagccattgatgttctgttcaggaattttccccct
gtgcccatattcttcaaggcttttccccactttctgctctataagttttc
aatgtctcctggttttatatggagtttcttgatctacttagacttgagct
tagtacaaaggagattaaggaatgggatcaacttggattcttctacatga
taactgccagttgtggctaccaccattttgttgaaatgcttgtctttttt
cactgcatggttttagctcccttgtcaagatcaagggaccttatgttaat
gggttctttcctgggtcttcaattcaattccatggtcctactgtctgttg
g
gaattcaattaaagtttgtgacaagataataagttccatagaaattcata
acgacattaattctgtctacagagaaatgttgtctcttgcttaaaaatga
cttctctagtcacttcatttaatttagctttagggaatttttaaatatat
atttatgtctatttcaataagagaaaccgtcctcttaagcctattgaaaa
agcaattatagttgactataataattttaggtattaagtactatttaaaa
cttcctagctataaaaatgcatgcctttggctaaagtagaactgggcatc
catctcttataatatgttccctgatgtttctttcctttgacaaattactt
tgctgtgagtttttgtgctagtaagtataatgtgaatccttttcctttat
gttaaatataaaagagtacataaagcatcgtatatatctgacagtgtggt
aaaaattataaaaaagaaacaaaaatgccaaacactggcaaaaatcttta
caagctatgtagtgatttcactcaaataattgttgatagagtcaaacaaa
tctatagcactactagcaacacacaagattaagacatttaagtgattaat
gggttttctaatattattccaaatacttaaaagctgtcctagtggacacc
aaaatgtggaatgacatttgtttctaatcaagacaaaatattttcccaaa
gaaatagttaaaatatttagccaactatacttctggtatgtttgtcattt
caacctataacaaaatatatttaatttttaaataaaattaactatttgat
atctatgaattaatcaaaaatatgaataattgctttctacctctttgaag
acttatttaatgatgatcacttccagagctccatctcacatcacaaatta
ataaatcaatttaatttatccttgtagtgtgcctctctcacagtacacaa
tgtgtcatagcatactttatctatttagtaagagatcattctcatttaca
tttaaaagataagaataattgagaaagaatttagactctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60492206_60493259
seq2: B6Ng01-065A24.g_68_1108 (reverse)

seq1  TGAGAGTTCTAAATTTCTTTCTCAATTATTCTTATCTTATAAAATGTAAA  50
      |||||| |||||| |||||||||||||||||||||||| | |||||||||
seq2  TGAGAG-TCTAAA-TTCTTTCTCAATTATTCTTATCTT-TTAAATGTAAA  47

seq1  TGGAGAATTGATCTCTTACTAAATAGATAAAGTATGCTATGAACACATTG  100
      | ||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  T-GAGAA-TGATCTCTTACTAAATAGATAAAGTATGCTATG-ACACATTG  94

seq1  TGTAACTTGTGAGAGAGGCACACCTACAAGGATAAATTAAATTGATTTAT  150
      ||||   ||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTA--CTGTGAGAGAGGCACA-CTACAAGGATAAATTAAATTGATTTAT  141

seq1  TAATTTGTGATTGTGAGATGGAGCCTCTGGAAGTTGATCATCATTAAATA  200
      |||||||||| |||||||||||| ||||||||| ||||||||||||||||
seq2  TAATTTGTGA-TGTGAGATGGAG-CTCTGGAAG-TGATCATCATTAAATA  188

seq1  AGTCTTCAAAGAGGTAGAAAGCAATTATTCATATTTTTTGATTAATTCAT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTCTTCAAAGAGGTAGAAAGCAATTATTCATA-TTTTTGATTAATTCAT  237

seq1  AGATATCAAATAGTTAATTTTATTTAAAAATTAAATATATTTTGTTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAAATAGTTAATTTTATTTAAAAATTAAATATATTTTGTTATAG  287

seq1  GTTGAAATGACAAACATACCAGAAGTATAGTTGGCTAAATATTTTAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATGACAAACATACCAGAAGTATAGTTGGCTAAATATTTTAACTA  337

seq1  TTTTCTTTGGAAAATATTTTGTCTTGATTAGAAACAAATGTCATTCCACA  400
      |||  || ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGGAAAATATTTTGTCTTGATTAGAAACAAATGTCATTCCACA  387

seq1  TTTTGGTGTCCACTAGGACAGCTTTTAAGTATTTGGAATAATATTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGTCCACTAGGACAGCTTTTAAGTATTTGGAATAATATTAGAAA  437

seq1  ACCCATTAATCACTTAAATGTCTTAATCTTGTGTGTTGCTAGTAGTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTAATCACTTAAATGTCTTAATCTTGTGTGTTGCTAGTAGTGCTA  487

seq1  TAGATTTGTTTGACTCTATCAACAATTATTTGAGTGAAATCACTACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGTTTGACTCTATCAACAATTATTTGAGTGAAATCACTACATAG  537

seq1  CTTGTAAAGATTTTTGCCAGTGTTTGGCATTTTTGTTTCTTTTTTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAGATTTTTGCCAGTGTTTGGCATTTTTGTTTCTTTTTTATAAT  587

seq1  TTTTACCACACTGTCAGATATATACGATGCTTTATGTACTCTTTTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCACACTGTCAGATATATACGATGCTTTATGTACTCTTTTATATT  637

seq1  TAACATAAAGGAAAAGGATTCACATTATACTTACTAGCACAAAAACTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAAGGAAAAGGATTCACATTATACTTACTAGCACAAAAACTCAC  687

seq1  AGCAAAGTAATTTGTCAAAGGAAAGAAACATCAGGGAACATATTATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTAATTTGTCAAAGGAAAGAAACATCAGGGAACATATTATAAGA  737

seq1  GATGGATGCCCAGTTCTACTTTAGCCAAAGGCATGCATTTTTATAGCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGCCCAGTTCTACTTTAGCCAAAGGCATGCATTTTTATAGCTAG  787

seq1  GAAGTTTTAAATAGTACTTAATACCTAAAATTATTATAGTCAACTATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTAAATAGTACTTAATACCTAAAATTATTATAGTCAACTATAAT  837

seq1  TGCTTTTTCAATAGGCTTAAGAGGACGGTTTCTCTTATTGAAATAGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCAATAGGCTTAAGAGGACGGTTTCTCTTATTGAAATAGACAT  887

seq1  AAATATATATTTAAAAATTCCCTAAAGCTAAATTAAATGAAGTGACTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATATTTAAAAATTCCCTAAAGCTAAATTAAATGAAGTGACTAGA  937

seq1  GAAGTCATTTTTAAGCAAGAGACAACATTTCTCTGTAGACAGAATTAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATTTTTAAGCAAGAGACAACATTTCTCTGTAGACAGAATTAATG  987

seq1  TCGTTATGAATTTCTATGGAACTTATTATCTTGTCACAAACTTTAATTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATGAATTTCTATGGAACTTATTATCTTGTCACAAACTTTAATTGA  1037

seq1  ATTC  1054
      ||||
seq2  ATTC  1041