BAC Information

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BAC

Clone NameB6Ng01-066C11
Chromosome16 (Build37)
Map Location 36,620,279 - 36,709,330
singlet/doubletdoublet
Overlap geneCd86, Ildr1
Upstream geneSema5b, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232
Downstream geneLOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066C11.bB6Ng01-066C11.g
ACCDH885411DH885412
length1,085145
definitionDH885411|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C11, 5' end.DH885412|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,620,279 - 36,621,371)(36,709,186 - 36,709,330)
sequence
gaattcatcaattaaaaaaaataaaacttccaaatttttgatacactcaa
cttatatgaaacacaaaaggcattttgctgaataaaagaagttcatctta
aagattaaagttcagctccatttatacgctattctcagaatgacagaacc
ctaagagataaagcaagagacccagattactacgggtggaaaaaaatctt
agactaaaaggagaaaatagaaggagtggctacattgtccattgttataa
tctgtctgtgttgctttgttcacctagccctatcttatctcaaaaaattc
tcactgatctccaagaaacaagctgtcaaagtacaaagggctttcagctc
cccactctcagaccccacattccctccaaatggactttctagaagtgact
ctcttctgccttcatttccagtctgttcaaatatccaccctcaatgtttc
tttgctcagtcatggtctcatctgagcagccgacaatctaaacacagcac
tgaccacataccgatcactgacagttctgttaatgtctgttggaggataa
ttgatcctgtgggtggctttttttgtataaaacaatcatacgagcccatg
tccttgatctgaacattgtgaagtcgtagagtccagttgttcctgtcaaa
gctcgtgcggcccaggtacttggcattcacactatcaagtttctctgtgc
ccaaatagtgctcgtacagaaccaacttttgctggtcctgccaaaatact
accagctcactcaggcttatgttttgagcctttgtaaatgggcacggcag
atatgcagtcccattgaaataagcttgcgtctccacggaaacagcatcta
aatagaaaaactgagaattaggaaagaggagacaagaagaggaagatccc
ttgctctgaaacagcacccagcttccagcttgtcaggcagtgatagtact
ggagaggtgggtgctaggtctggaaccaggcatccatgctggacgtctga
agctcaggcttcgttttgctcacttggttccatgtgcaggctgcaaactt
tgtgaatctgttttccaccagataaggagtggtct
aaagctgttcaatctaccaggtgaccaatacttcccgcttgctcccttaa
cccagaagaatcaatgcctcaatttggaaagattccttcggtgctaacat
cagactaagtgaggagactcggtgagattttgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36620279_36621371
seq2: B6Ng01-066C11.b_35_1119

seq1  GAATTCATCAATTAAAAAAAATAAAACTTCCAAATTTTTGATACACTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAATTAAAAAAAATAAAACTTCCAAATTTTTGATACACTCAA  50

seq1  CTTATATGAAACACAAAAGGCATTTTGCTGAATAAAAGAAGTTCATCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGAAACACAAAAGGCATTTTGCTGAATAAAAGAAGTTCATCTTA  100

seq1  AAGATTAAAGTTCAGCTCCATTTATACGCTATTCTCAGAATGACAGAACC  150
      |||||||||||||||||||||||                     ||||||
seq2  AAGATTAAAGTTCAGCTCCATTTNNNNNNNNNNNNNNNNNNNNNAGAACC  150

seq1  CTAAGAGATAAAGCAAGAGACCCAGATTACTACGGGTGGAAAAAAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGATAAAGCAAGAGACCCAGATTACTACGGGTGGAAAAAAATCTT  200

seq1  AGACTAAAAGGAGAAAATAGAAGGAGTGGCTACATTGTCCATTGTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAAGGAGAAAATAGAAGGAGTGGCTACATTGTCCATTGTTATAA  250

seq1  TCTGTCTGTGTTGCTTTGTTCACCTAGCCCTATCTTATCTCAAAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGTTGCTTTGTTCACCTAGCCCTATCTTATCTCAAAAAATTC  300

seq1  TCACTGATCTCCAAGAAACAAGCTGTCAAAGTACAAAGGGCTTTCAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATCTCCAAGAAACAAGCTGTCAAAGTACAAAGGGCTTTCAGCTC  350

seq1  CCCACTCTCAGACCCCACATTCCCTCCAAATGGACTTTCTAGAAGTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCAGACCCCACATTCCCTCCAAATGGACTTTCTAGAAGTGACT  400

seq1  CTCTTCTGCCTTCATTTCCAGTCTGTTCAAATATCCACCCTCAATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCCTTCATTTCCAGTCTGTTCAAATATCCACCCTCAATGTTTC  450

seq1  TTTGCTCAGTCATGGTCTCATCTGAGCAGCCGACAATCTAAACACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAGTCATGGTCTCATCTGAGCAGCCGACAATCTAAACACAGCAC  500

seq1  TGACCACATACCGATCACTGACAGTTCTGTTAATGTCTGTTGGAGGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACATACCGATCACTGACAGTTCTGTTAATGTCTGTTGGAGGATAA  550

seq1  TTGATCCTGTGGGTGGCTTTTTTTGTATAAAACAATCATACGAGCCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTGTGGGTGGCTTTTTTTGTATAAAACAATCATACGAGCCCATG  600

seq1  TCCTTGATCTGAACATTGTGAAGTCGTAGAGTCCAGTTGTTCCTGTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATCTGAACATTGTGAAGTCGTAGAGTCCAGTTGTTCCTGTCAAA  650

seq1  GCTCGTGCGGCCCAGGTACTTGGCATTCACACTATCAAGTTTCTCTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTGCGGCCCAGGTACTTGGCATTCACACTATCAAGTTTCTCTGTGC  700

seq1  CCAAATAGTGCTCGTACAGAACCAACTTTTGCTGGTCCTGCCAAAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGTGCTCGTACAGAACCAACTTTTGCTGGTCCTGCCAAAATACT  750

seq1  ACCAGCTCACTCAGGCTTATGTTTTGAGCCTTTGTAAATGGGCACGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCACTCAGGCTTATGTTTTGAGCCTTTGTAAATGGGCACGGCAG  800

seq1  ATATGCAGTCCCATTGAAATAAGCTTGCGTCTCCACGGAAACAGCATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATGCAGTCCCATTGAAATAAGCTTGCGTCTCCACGGAAACAGCATCT-  849

seq1  AAATAGAAAAACTGAGAATTAGGAAAGAGGAGACAAGAAGAGGAAGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAAACTGAGAATTAGGAAAGAGGAGACAAGAAGAGGAAGATCC  899

seq1  CTTGCTCTGAAACAGCACCCAGCTTCCAGCTTGTCAGGCAGTGATAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTGAAACAGCACCCAGCTTCCAGCTTGTCAGGCAGTGATAGTAC  949

seq1  TGGAGAGGTGGGTGCTAGGATCTGGAACCAGGCATCCATGCTGGACGTCT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGAGAGGTGGGTGCTAGG-TCTGGAACCAGGCATCCATGCTGGACGTCT  998

seq1  GAAGCTCAGGCTTTCGTTTTGCTCCACTTGGTTCACATGTGCAGGCTGCA  1050
      ||||||||||| ||||||||||| |||||||||| |||||||||||||||
seq2  GAAGCTCAGGC-TTCGTTTTGCT-CACTTGGTTC-CATGTGCAGGCTGCA  1045

seq1  AACTTTGTGAATCTGTTTTCTCACCAGATTAAGGAAGTGGTCT  1093
      |||||||||||||||||||| ||||||| ||||| ||||||||
seq2  AACTTTGTGAATCTGTTTTC-CACCAGA-TAAGG-AGTGGTCT  1085

seq1: chr16_36709186_36709330
seq2: B6Ng01-066C11.g_79_223 (reverse)

seq1  CCCCCCCCCCCCCCAAAATCTCACCGAGTCTCCTCACTTAGTCTGATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCAAAATCTCACCGAGTCTCCTCACTTAGTCTGATGTT  50

seq1  AGCACCGAAGGAATCTTTCCAAATTGAGGCATTGATTCTTCTGGGTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGAAGGAATCTTTCCAAATTGAGGCATTGATTCTTCTGGGTTAAG  100

seq1  GGAGCAAGCGGGAAGTATTGGTCACCTGGTAGATTGAACAGCTTT  145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGCGGGAAGTATTGGTCACCTGGTAGATTGAACAGCTTT  145