BAC Information

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BAC

Clone NameB6Ng01-066G22
Chromosome16 (Build37)
Map Location 66,885,091 - 66,979,747
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneLOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066G22.bB6Ng01-066G22.g
ACCDH885615DH885616
length1,143520
definitionDH885615|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G22, 5' end.DH885616|Mus musculus domesticus DNA, BAC clone: B6Ng01-066G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,978,573 - 66,979,747)(66,885,091 - 66,885,616)
sequence
gaattccttctcttgacactgaatctatttggagacaagcttttaaagag
gaaattaaggttaagtggggggtcgtaaaagacatggcaggggctaaaaa
gtagcaatgatgtctttatgaggggaagaaactccaaagcacaaagaaga
gatgaccagaagatgaattcgtgctagctagagacaaggcccaggagaaa
ccaatgtaattgctaacttcaccttggccaaaccgtctatagctcatcca
tcgtataaatcagtgttgtttcagtatggtgtaatagtaacatttcaaaa
tgtatatatttcaaaatattcaatgtgaatacatattaaagtactattat
cagtacatattaaagtactatttgattttaatttgctctattgtgatctc
ttggttttaagggttatgatacattgtaaataaaaaaaaaatctaaagta
tcaaaagaaaaaatatattttatatccattacagtaaggatgcctttgct
tccttatctaccttttcccggacataaagtgtttaagaacaccattacct
cttgcctagcatactgaaatgcgagtcttcattggcttaatttccttcac
gtttgaatgatttttccctaaaagtcatagtgtcccaatattctgcctca
ctaaataagaataaagaagacatgtttcagtcttacaaacacagttcaaa
taagttgggataatatttcttttttttttaattggacattttctttattt
acattgcaaaggttatcctctttcctggtatcccctccgaaaactgcata
tccccttcccctgtcccgtcccctgctcaccaagcaattcaatcctgacc
ctggcattcccctacactggggctgagagccatctcagaccaagggcctc
tcctcccattgatgactgactggactatcctctgctacgtatgcagctgt
agggatgggtccctcatgtgtactctttgttagtggtttagtccctggga
gctctggggtactgtagtcatatgttgtcttcatggggtgccaaacctca
gctcatggtctttctctagctctcatagactgtgctcagtctatagttgc
tgaaacatccacttggatttgtcgaacctgcagcctctcagga
agggagaaaagttagtgatgcttgtaacaattttgtctactacatttgca
gaataattttcaaaacatccccataagaaaatattatccttctcatttca
cagatgggtaaactgacactgggaggttaagtgattttttttcttttccc
atggtgagacaaagtcaatgaaccattggaagtttattctgaaagttcag
tgtttcctcttctcattccagagtagctgctgggtcataatagctgtgtt
accatttcatgaaatataaatttgacagcaaatgggaaaaatcaataatc
atttttaacaaagaaatttaaattgtaaaatcagatataagaaatgtaag
cattaattttttattgttatttgctaatgcaaaaaactaattttaatcaa
tattcttggattcttggtccacaaaaagtagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagagagagagaaagggaga
gagggagggagggaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66978573_66979747
seq2: B6Ng01-066G22.b_50_1192 (reverse)

seq1  TCCTGAGAGGCTCTGCCAGTGTCTGACAAATACATAGGTGGATGCTCTCA  50
      ||||||||||||    ||| ||  ||||||| |  | ||||||| | |||
seq2  TCCTGAGAGGCT---GCAG-GTTCGACAAATCC--AAGTGGATG-TTTCA  43

seq1  GCCAACTATTAGACTGAGCACAGGTTCCCTAATGGAGGAGCTAGAGAGAG  100
      | |||||| ||||||||||||||  |     |||   |||||||||| | 
seq2  G-CAACTA-TAGACTGAGCACAGTCT-----ATG--AGAGCTAGAGA-AA  83

seq1  GACCCAATGAGCTGAAGGGTTTTGCAACCCCATTGGAAGAACAACAATAT  150
      ||||  |||||||||  ||||| || |||||||  |||| ||||| ||||
seq2  GACC--ATGAGCTGA--GGTTTGGC-ACCCCAT--GAAG-ACAAC-ATAT  124

seq1  GAACTAACCAGTACCCCCAGAGCTCCCAGGGACTAAACCACTAACAAAGA  200
      | ||||  ||||| ||||||||||||||||||||||||||||||||||||
seq2  G-ACTA--CAGTA-CCCCAGAGCTCCCAGGGACTAAACCACTAACAAAGA  170

seq1  GTACACATGGAGGGACCCATCCCTACAGCTGCATACGTAGCAGAGGATAG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAT-GAGGGACCCATCCCTACAGCTGCATACGTAGCAGAGGATAG  219

seq1  TCCAGTCAGTCATCAATGGGAGGAGAGGCCCTTGGTCCTGAGATGGCTCT  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCAGTCAGTCATCAATGGGAGGAGAGGCCCTTGGT-CTGAGATGGCTCT  268

seq1  CAGCCCCAGTGTAGGGGAATGCCAGGGTCAGGATTGAATTGCTTGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGTGTAGGGGAATGCCAGGGTCAGGATTGAATTGCTTGGTGAG  318

seq1  CAGGGGACGGGACAGGGGAAGGGGATATGCAGTTTTCGGAGGGGATACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACGGGACAGGGGAAGGGGATATGCAGTTTTCGGAGGGGATACCA  368

seq1  GGAAAGAGGATAACCTTTGCAATGTAAATAAAGAAAATGTCCAATTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGATAACCTTTGCAATGTAAATAAAGAAAATGTCCAATTAAAA  418

seq1  AAAAAAGAAATATTATCCCAACTTATTTGAACTGTGTTTGTAAGACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAATATTATCCCAACTTATTTGAACTGTGTTTGTAAGACTGAA  468

seq1  ACATGTCTTCTTTATTCTTATTTAGTGAGGCAGAATATTGGGACACTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTTCTTTATTCTTATTTAGTGAGGCAGAATATTGGGACACTATG  518

seq1  ACTTTTAGGGAAAAATCATTCAAACGTGAAGGAAATTAAGCCAATGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGGGAAAAATCATTCAAACGTGAAGGAAATTAAGCCAATGAAGA  568

seq1  CTCGCATTTCAGTATGCTAGGCAAGAGGTAATGGTGTTCTTAAACACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCATTTCAGTATGCTAGGCAAGAGGTAATGGTGTTCTTAAACACTTT  618

seq1  ATGTCCGGGAAAAGGTAGATAAGGAAGCAAAGGCATCCTTACTGTAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCGGGAAAAGGTAGATAAGGAAGCAAAGGCATCCTTACTGTAATGG  668

seq1  ATATAAAATATATTTTTTCTTTTGATACTTTAGATTTTTTTTTTATTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATATATTTTTTCTTTTGATACTTTAGATTTTTTTTTTATTTAC  718

seq1  AATGTATCATAACCCTTAAAACCAAGAGATCACAATAGAGCAAATTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCATAACCCTTAAAACCAAGAGATCACAATAGAGCAAATTAAAA  768

seq1  TCAAATAGTACTTTAATATGTACTGATAATAGTACTTTAATATGTATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGTACTTTAATATGTACTGATAATAGTACTTTAATATGTATTCA  818

seq1  CATTGAATATTTTGAAATATATACATTTTGAAATGTTACTATTACACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATATTTTGAAATATATACATTTTGAAATGTTACTATTACACCAT  868

seq1  ACTGAAACAACACTGATTTATACGATGGATGAGCTATAGACGGTTTGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACAACACTGATTTATACGATGGATGAGCTATAGACGGTTTGGCC  918

seq1  AAGGTGAAGTTAGCAATTACATTGGTTTCTCCTGGGCCTTGTCTCTAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGTTAGCAATTACATTGGTTTCTCCTGGGCCTTGTCTCTAGCT  968

seq1  AGCACGAATTCATCTTCTGGTCATCTCTTCTTTGTGCTTTGGAGTTTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAATTCATCTTCTGGTCATCTCTTCTTTGTGCTTTGGAGTTTCTT  1018

seq1  CCCCTCATAAAGACATCATTGCTACTTTTTAGCCCCTGCCATGTCTTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCATAAAGACATCATTGCTACTTTTTAGCCCCTGCCATGTCTTTTA  1068

seq1  CGACCCCCCACTTAACCTTAATTTCCTCTTTAAAAGCTTGTCTCCAAATA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCCCCACTTAACCTTAATTTCCTCTTTAAAAGCTTGTCTCCAAATA  1118

seq1  GATTCAGTGTCAAGAGAAGGAATTC  1175
      |||||||||||||||||||||||||
seq2  GATTCAGTGTCAAGAGAAGGAATTC  1143

seq1: chr16_66885091_66885616
seq2: B6Ng01-066G22.g_69_594

seq1  GAATTCAGGGAGAAAAGTTAGTGATGCTTGTAACAATTTTGTCTACTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGAAAAGTTAGTGATGCTTGTAACAATTTTGTCTACTACA  50

seq1  TTTGCAGAATAATTTTCAAAACATCCCCATAAGAAAATATTATCCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAATAATTTTCAAAACATCCCCATAAGAAAATATTATCCTTCTC  100

seq1  ATTTCACAGATGGGTAAACTGACACTGGGAGGTTAAGTGATTTTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAGATGGGTAAACTGACACTGGGAGGTTAAGTGATTTTTTTTCT  150

seq1  TTTCCCATGGTGAGACAAAGTCAATGAACCATTGGAAGTTTATTCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATGGTGAGACAAAGTCAATGAACCATTGGAAGTTTATTCTGAAA  200

seq1  GTTCAGTGTTTCCTCTTCTCATTCCAGAGTAGCTGCTGGGTCATAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTTTCCTCTTCTCATTCCAGAGTAGCTGCTGGGTCATAATAGC  250

seq1  TGTGTTACCATTTCATGAAATATAAATTTGACAGCAAATGGGAAAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACCATTTCATGAAATATAAATTTGACAGCAAATGGGAAAAATCA  300

seq1  ATAATCATTTTTAACAAAGAAATTTAAATTGTAAAATCAGATATAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATTTTTAACAAAGAAATTTAAATTGTAAAATCAGATATAAGAAA  350

seq1  TGTAAGCATTAATTTTTTATTGTTATTTGCTAATGCAAAAAACTAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCATTAATTTTTTATTGTTATTTGCTAATGCAAAAAACTAATTTT  400

seq1  AATCAATATTCTTGGATTCTTGGTCCACAAAAAGTAGAAAGAAAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATATTCTTGGATTCTTGGTCCACAAAAAGTAGAAAGAAAGAAAGA  450

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAAA  500

seq1  GGGAGAGAGGGAGGGAGGGAGGAAGG  526
      ||||||||||||||||||||||||||
seq2  GGGAGAGAGGGAGGGAGGGAGGAAGG  526