BAC Information

Click to search

BAC

Clone NameB6Ng01-068F13
Chromosome16 (Build37)
Map Location 19,571,609 - 19,572,666
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169
Downstream geneOlfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068F13.bB6Ng01-068F13.g
ACCDH886961DH886962
length9271,059
definitionDH886961|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F13, 5' end.DH886962|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacatcttcatctgaaggctgctagcagaatacttgcttctaga
cagctaggatgaggacttttttattgcatagttttttatttacatatcaa
gtgttatgtcttttcccaatcaatcccccaacatataccccatccctcct
cctcctgcttctgtgagggaattcccttacccacacacccagtcctgctt
cctggccctggaattcttctacaatggggcatagagcattcacaggacca
agggcctctcctcctattcgtgcctgacaaggatgtcctctgctacatat
gtggctggagccatgggtctctcatgtgtactctctggttggtggtttag
ttcatgggaggtctgaggggtctggttgattgatattattgttcttccta
tggggttgcaaaccccttcagctccttcagtcctttctctaattcctcca
ctagggaccccatgttggctgccagattctgcctctgtgtttgtcaggct
ctggtagaacctttcctgagacagttgtatcaggctcctgtcagcaagca
cttcttcgcatccacaacaatgtctgggtttggtgatggtatatgggatg
gatccccagtgggggaaatctctagatgacttttccttcagtttcttctc
cacactttgtctctgtattatctcccatgagtattttgttaccccttcta
agaaggattgaagcatccacactttggtcttccatgatcttgagctttca
gatggtttgtaaattgtatcttgcatattcagtgactgcataccgtgtat
gttctttttgtactgggagatctcactcaaaatgatgttttctagtccca
accatttgcctaaaattcataaatcattattttttaaaagctgagtagat
tccatttgtaatgtattacattttcgg
gaattcttcctgactctttcctgaatatttcataaataatgtctgcatgt
gtttttagacttgtggtcatatttatattgttcttgctttttctcactta
ataaaatatattcaccctaatctgtatcatacacacatagaaagagttgc
cttggtcatggtgtctcttcaaaccagtggaaacatcaagaatggcacct
ggaaataatgtccaatctctgtgggcctcctgttgtagattgacaaatag
aagaaataaagcaatagttatactatgtgggtctgcctatacttctagta
cttgcaatactgaggctggagattttcataagctgagtccaatcgggcta
catagtgagatctatgtcatcttgagttacctgtctcaaacttagaacaa
atcatgtaaggcgttaataaataagagatgtttgcaatcatggttgaagt
tctgaaatgcatggaaaagtttagtcataaggattataacaaaatcaaca
aaattagttatcagagtgctacattctttgatatatgttattaattagat
agtttctttatttacatttcaaatgctatcccgaaagttccttataccct
tctcctgccctcattggtatttttattgttattttttgatgatatgattc
tcagaccccttctttttcccacaaagaatgctacagtgcacttatttttc
cccacacaggccacttctgcatgcctagatgactctcaggggatccaatt
ttcaacgctttcatttcaaaagctggctgctttctctctcagataccaca
cactaggaatttcaaggagagtagatatcttccacatttatttatgttgc
atcctaattatccatggccagtttgagttgatctgaagtggatgctggat
gtgagatgccttccatcatacctatagaggtgttattaataacataacca
agtgatcagaatctgagtgaagatgccccttattactgctgaatctagag
gataaagtgtgcttattgggtaaaaaggtgtggtctgatatgataagtta
aggggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19571609_19572666
seq2: B6Ng01-068F13.g_70_1128 (reverse)

seq1  TGCCCCCCTT-ACTTATCATATCAGACCACACCTTATTTACCATAT-AGC  48
      |||||||||| |||||||||||||||||||||||| ||||||  || |||
seq2  TGCCCCCCTTAACTTATCATATCAGACCACACCTT-TTTACCCAATAAGC  49

seq1  ACACTTTATCCTCTAGATTCAGCAGT-ATAAGGGGCATCTTCACTCAGGA  97
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  ACACTTTATCCTCTAGATTCAGCAGTAATAAGGGGCATCTTCACTCA-GA  98

seq1  TTCTGATCACTTGGTTATGTTATTAATAACACCTCTATAGGTATGATGGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCACTTGGTTATGTTATTAATAACACCTCTATAGGTATGATGGA  148

seq1  AGGCATCTCACATCCAGCATCCACTTCAGATCAACTCAAACTGGCCATGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTCACATCCAGCATCCACTTCAGATCAACTCAAACTGGCCATGG  198

seq1  ATAATTAGGATGCAACATAAATAAATGTGGAAGATATCTACTCTCCTTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGGATGCAACATAAATAAATGTGGAAGATATCTACTCTCCTTGA  248

seq1  AATTCCTAGTGTGTGGTATCTGAGAGAGAAAGCAGCCAGCTTTTGAAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAGTGTGTGGTATCTGAGAGAGAAAGCAGCCAGCTTTTGAAATG  298

seq1  AAAGCGTTGAAAATTGGATCCCCTGAGAGTCATCTAGGCATGCAGAAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGTTGAAAATTGGATCCCCTGAGAGTCATCTAGGCATGCAGAAGTG  348

seq1  GCCTGTGTGGGGAAAAATAAGTGCACTGTAGCATTCTTTGTGGGAAAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGGGGAAAAATAAGTGCACTGTAGCATTCTTTGTGGGAAAAAG  398

seq1  AAGGGGTCTGAGAATCATATCATCAAAAAATAACAATAAAAATACCAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTCTGAGAATCATATCATCAAAAAATAACAATAAAAATACCAATG  448

seq1  AGGGCAGGAGAAGGGTATAAGGAACTTTCGGGATAGCATTTGAAATGTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGAGAAGGGTATAAGGAACTTTCGGGATAGCATTTGAAATGTAA  498

seq1  ATAAAGAAACTATCTAATTAATAACATATATCAAAGAATGTAGCACTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAACTATCTAATTAATAACATATATCAAAGAATGTAGCACTCTG  548

seq1  ATAACTAATTTTGTTGATTTTGTTATAATCCTTATGACTAAACTTTTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAATTTTGTTGATTTTGTTATAATCCTTATGACTAAACTTTTCCA  598

seq1  TGCATTTCAGAACTTCAACCATGATTGCAAACATCTCTTATTTATTAACG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCAGAACTTCAACCATGATTGCAAACATCTCTTATTTATTAACG  648

seq1  CCTTACATGATTTGTTCTAAGTTTGAGACAGGTAACTCAAGATGACATAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATGATTTGTTCTAAGTTTGAGACAGGTAACTCAAGATGACATAG  698

seq1  ATCTCACTATGTAGCCCGATTGGACTCAGCTTATGAAAATCTCCAGCCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTATGTAGCCCGATTGGACTCAGCTTATGAAAATCTCCAGCCTC  748

seq1  AGTATTGCAAGTACTAGAAGTATAGGCAGACCCACATAGTATAACTATTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGCAAGTACTAGAAGTATAGGCAGACCCACATAGTATAACTATTG  798

seq1  CTTTATTTCTTCTATTTGTCAATCTACAACAGGAGGCCCACAGAGATTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTTCTATTTGTCAATCTACAACAGGAGGCCCACAGAGATTGG  848

seq1  ACATTATTTCCAGGTGCCATTCTTGATGTTTCCACTGGTTTGAAGAGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTCCAGGTGCCATTCTTGATGTTTCCACTGGTTTGAAGAGACA  898

seq1  CCATGACCAAGGCAACTCTTTCTATGTGTGTATGATACAGATTAGGGTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAAGGCAACTCTTTCTATGTGTGTATGATACAGATTAGGGTGA  948

seq1  ATATATTTTATTAAGTGAGAAAAAGCAAGAACAATATAAATATGACCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTATTAAGTGAGAAAAAGCAAGAACAATATAAATATGACCACA  998

seq1  AGTCTAAAAACACATGCAGACATTATTTATGAAATATTCAGGAAAGAGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAAACACATGCAGACATTATTTATGAAATATTCAGGAAAGAGTC  1048

seq1  AGGAAGAATTC  1058
      |||||||||||
seq2  AGGAAGAATTC  1059