BAC Information

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BAC

Clone NameB6Ng01-068G05
Chromosome16 (Build37)
Map Location 85,026,700 - 85,128,612
singlet/doubletdoublet
Overlap geneApp
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068G05.bB6Ng01-068G05.g
ACCDH886987DH886988
length933785
definitionDH886987|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G05, 5' end.DH886988|Mus musculus domesticus DNA, BAC clone: B6Ng01-068G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,026,700 - 85,027,629)(85,127,830 - 85,128,612)
sequence
gaattcctcaggcaagacatctcaaaattatttttgagatagaaactaaa
tgtcttactggggcatgaaaaccgattcccctgcattatgtatctttgct
atcatcttatcttagacattcggaacctggatcaccctcttggaattgca
gatccatgaaataattaagatttacctaggtaatgtattgaaaatatgca
ttactatataaatgaacttgaatgttgacttttcagaataatttagcaaa
catcttctactctcacacatccatggcctatgtcgtcactgaaggactac
ttacagacacgctgtaggcagaagatttacccccttaaccagtggctttt
actagggtgcactggtaatagataatattactgggtaaagtgctttacaa
aatctgtctggtttaattgatgcctgattacagcaggctctgtactcagt
aatcttactctacagacctgtttaagaaagctgtgagagtaaccaatgga
cgaggagtgatgatgagcctactatcctcctggcccagtgtgctgctgca
gatctatctacaggcaagtcaagggtcagtaccagtagctgtccctaaga
tgccactgaatatattaaaaaactcagcatcgggcaagtttttgttttga
aggacttcattctgcatgcacactaaatggactagatatagaagtaagtg
tgaccaatgatctttgctcgccagcctgatgggatttagggaaccaagtt
ctctggaaatgtcaggggcagggattttctggattaggttagttgatgtg
ggggagactcaccctaaatttaagaagcactgggctgtggctggggtttc
tggacaggaggcaaaggagagagcatgccatgcactctgctgcctgattg
caggtgccttgtgacctgctgctgcctcagctc
gaattctgatcttgataatgaaaaggagagaaagttcctggagagaagga
gcgccctgtttgaaaggcagaaagagagcttgttccagacgctgcctctt
cccttcattgtaaatggtaggggttggaggggtagacttccccattcacc
ctctgcagatgggtccaagtcaagtccatatgtttacctttattttagct
ctgctgatttaaggccaacatctagctgcagtaccatgaggaaagtccat
ggcatgtctttgctctctgtgttgtggctcaaggaaaaaaaaaaacaaac
ttttttgttttccctgatagcaaaggtttgtttccaaaaaggttagccgt
gtttttaagagtaatatttccgtggctctagctcagcgtttttttaagta
gcctctttgcttttgaagccatggctgaacacctactgtttcagctggct
gttttgtttgttggcaccgaacactgttttcccatgggaaaaatatctcc
agtttcaggatggcggcagcaatccatacaggttattttcatacgcagcc
tccacaaaaccacacgaaccacgcaagccacctgtgtacagtatgggttc
tagcccgcactgttgacttacatttctgaaaaaaataacctggtggtgct
aatcccactggtggagattaagactactgaaagaatttttttgatccaaa
tttgaagcaagctttttaattaaatactggtcaggatgatgaactctggg
ggggtccattcttggtgtcccagaaaacagtaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85026700_85027629
seq2: B6Ng01-068G05.b_46_978

seq1  GAATTCCTCAGGCAAGACATCTCAAAATTA-GTTTGAGATAGAAACTAAA  49
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GAATTCCTCAGGCAAGACATCTCAAAATTATTTTTGAGATAGAAACTAAA  50

seq1  TGTCTTACTGGGGCATGAAAACCGATTCCCCTGCATTATGTATCTTTGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACTGGGGCATGAAAACCGATTCCCCTGCATTATGTATCTTTGCT  100

seq1  ATCATCTTATCTTAGACATTCGGAACCTGGATCACCCTCTTGGAATTGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTATCTTAGACATTCGGAACCTGGATCACCCTCTTGGAATTGCA  150

seq1  GATCCATGAAATAATTAAGATTTACCTAGGTAATGTATTGAAAATATGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGAAATAATTAAGATTTACCTAGGTAATGTATTGAAAATATGCA  200

seq1  TTACTATATAAATGAACTTGAATGTTGACTTTTCAGAATAATTTAGCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATATAAATGAACTTGAATGTTGACTTTTCAGAATAATTTAGCAAA  250

seq1  CATCTTCTACTCTCACACATCCATGGCCTATGTCGTCACTGAAGGACTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTACTCTCACACATCCATGGCCTATGTCGTCACTGAAGGACTAC  300

seq1  TTACAGACACGCTGTAGGCAGAAGATTTACCCCCTTAACCAGTGGCTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACACGCTGTAGGCAGAAGATTTACCCCCTTAACCAGTGGCTTTT  350

seq1  ACTAGGGTGCACTGGTAATAGATAATATTACTGGGTAAAGTGCTTTACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTGCACTGGTAATAGATAATATTACTGGGTAAAGTGCTTTACAA  400

seq1  AATCTGTCTGGTTTAATTGATGCCTGATTACAGCAGGCTCTGTACTCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCTGGTTTAATTGATGCCTGATTACAGCAGGCTCTGTACTCAGT  450

seq1  AATCTTACTCTACAGACCTGTTTAAGAAAGCTGTGAGAGTAACCAATGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACTCTACAGACCTGTTTAAGAAAGCTGTGAGAGTAACCAATGGA  500

seq1  CGAGGAGTGATGATGAGCCTACTATCCTCCTGGCCCAGTGTGCTGCTGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAGTGATGATGAGCCTACTATCCTCCTGGCCCAGTGTGCTGCTGCA  550

seq1  GATCTATCTACAGGCAAGTCAAGGGTCAGTACCAGTAGCTGTCCCTAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATCTACAGGCAAGTCAAGGGTCAGTACCAGTAGCTGTCCCTAAGA  600

seq1  TGCCACTGAATATATTAAAAAACTCAGCATCGGGCAAGTTTTTGTTTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGAATATATTAAAAAACTCAGCATCGGGCAAGTTTTTGTTTTGA  650

seq1  AGGACTTCATTCTGCATGCACACTAAATGGACTAGATATAGAAGTAAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCATTCTGCATGCACACTAAATGGACTAGATATAGAAGTAAGTG  700

seq1  TGACCAATGATC-TTGCTCGCCAGCCTGATGGGATTTAGGGAACCAAG-T  747
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TGACCAATGATCTTTGCTCGCCAGCCTGATGGGATTTAGGGAACCAAGTT  750

seq1  CTCTGGAAATGTCAGGGGCAGGGATTTTCTGGATTAGGTTAGTTGATGT-  796
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCTGGAAATGTCAGGGGCAGGGATTTTCTGGATTAGGTTAGTTGATGTG  800

seq1  GGGGAGACTCACCCTAAATTTAAGAAGCACTGGGCTGTGGCTGGGGTTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACTCACCCTAAATTTAAGAAGCACTGGGCTGTGGCTGGGGTTTC  850

seq1  TGGACAGGAGGCAAAGGAGAGAGCAGGCCATGCACTCTGCTGCCTGACTG  896
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TGGACAGGAGGCAAAGGAGAGAGCATGCCATGCACTCTGCTGCCTGATTG  900

seq1  CAGGTGCCATGTGACCTGCTGCTGCCTCAAGCTC  930
      |||||||| ||||||||||||||||||| |||||
seq2  CAGGTGCCTTGTGACCTGCTGCTGCCTC-AGCTC  933

seq1: chr16_85127830_85128612
seq2: B6Ng01-068G05.g_70_853 (reverse)

seq1  TTTACTGTTTCCTGGGACCCCAAGAATGGACCCCGCCAGAGTTCATCATC  50
      |||||||||| ||||||| ||||||||||||||| |||||||||||||||
seq2  TTTACTGTTTTCTGGGACACCAAGAATGGACCCCCCCAGAGTTCATCATC  50

seq1  CTGGCCAGTATTTAATT-AAAAGCTTGCTTCAAATTTGGATC-AAAAAAT  98
      ||| ||||||||||||| |||||||||||||||||||||||| |||||||
seq2  CTGACCAGTATTTAATTAAAAAGCTTGCTTCAAATTTGGATCAAAAAAAT  100

seq1  TCTTTCAGTGGTCTTAATCTCCACCAGTGGGATTAGCACCACCAGGTTAT  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGTAGTCTTAATCTCCACCAGTGGGATTAGCACCACCAGGTTAT  150

seq1  TTTTTTCAGAAATGTAAGTCAACAGTGCGGGCTAGAACCCATACTGTACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGAAATGTAAGTCAACAGTGCGGGCTAGAACCCATACTGTACA  200

seq1  CAGGTGGCTCTGCGTGGTTCGTGTGGTTTTGTGGAGGCTGCGTATGAAAA  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCT-TGCGTGGTTCGTGTGGTTTTGTGGAGGCTGCGTATGAAAA  249

seq1  TAACCTGTATGGATTGCTGCCGCCATCCTGAAACTGGAGATATTTTTCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTATGGATTGCTGCCGCCATCCTGAAACTGGAGATATTTTTCCC  299

seq1  ATGGGAAAACAGTGTTCGGTGCCAACAAACAAAACAGCCAGCTGAAACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAACAGTGTTCGGTGCCAACAAACAAAACAGCCAGCTGAAACAG  349

seq1  TAGGTGTTCAGCCATGGCTTCAAAAGCAAAGAGGCTACTTAAAAAAACGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTCAGCCATGGCTTCAAAAGCAAAGAGGCTACTTAAAAAAACGC  399

seq1  TGAGCTAGAGCCACGGAAATATTACTCTTAAAAACACGGCTAACCTTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGAGCCACGGAAATATTACTCTTAAAAACACGGCTAACCTTTTT  449

seq1  GGAAACAAACCTTTGCTATCAGGGAAAACAAAAAAGTTTGTTTTTTTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAACCTTTGCTATCAGGGAAAACAAAAAAGTTTGTTTTTTTTTT  499

seq1  TCCTTGAGCCACAACACAGAGAGCAAAGACATGCCATGGACTTTCCTCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGCCACAACACAGAGAGCAAAGACATGCCATGGACTTTCCTCAT  549

seq1  GGTACTGCAGCTAGATGTTGGCCTTAAATCAGCAGAGCTAAAATAAAGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGCAGCTAGATGTTGGCCTTAAATCAGCAGAGCTAAAATAAAGGT  599

seq1  AAACATATGGACTTGACTTGGACCCATCTGCAGAGGGTGAATGGGGAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATGGACTTGACTTGGACCCATCTGCAGAGGGTGAATGGGGAAGT  649

seq1  CTACCCCTCCAACCCCTACCATTTACAATGAAGGGAAGAGGCAGCGTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTCCAACCCCTACCATTTACAATGAAGGGAAGAGGCAGCGTCTG  699

seq1  GAACAAGCTCTCTTTCTGCCTTTCAAACAGGGCGCTCCTTCTCTCCAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCTCTCTTTCTGCCTTTCAAACAGGGCGCTCCTTCTCTCCAGGA  749

seq1  ACTTTCTCTCCTTTTCATTATCAAGATCAGAATTC  783
      |||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTCCTTTTCATTATCAAGATCAGAATTC  784