BAC Information

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BAC

Clone NameB6Ng01-068M20
Chromosome16 (Build37)
Map Location 37,977,250 - 38,116,843
singlet/doubletdoublet
Overlap geneGpr156, LOC100043713, Gsk3b
Upstream geneFbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, LOC100043271
Downstream geneNr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068M20.bB6Ng01-068M20.g
ACCDH887285DH887286
length1,0721,146
definitionDH887285|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M20, 5' end.DH887286|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,115,758 - 38,116,843)(37,977,250 - 37,978,428)
sequence
gaattctaaagcaatctatggatagaactctgcattgatgaacctcagta
gcaaaacctggtttaaaaggcacaacttaacagctatgaactttagacaa
attacttaacttttctaaattcaattttgcttttgcaaactacagatgac
aatacttgtttctcagaattattaaagaaataaatgaaaaccatgtaagt
aaacagtaaaagatacagtaaacacccagaagatgctaattcctaccaaa
ggacccatacccacactcactcactctctggaaaataaacaataaaatta
tgcaggttgtgcatatcgtacagctctcgttctttctatttagattaaat
cgacctctgggccagcaaatgggcttagcagtgaaaggtgcaaaccacca
acccagaaaaccagagtgatgccagaacccacaccatggaaataaagaac
ctattcccacaagttgtcctctaaaatccacacacaaataaataaataaa
taaataaacctttaaaaaaaaatcaagccaacctcaaaaaagacccaaga
aaataaattcttctgctgtttggaaagcagcaaactagaagtgctatggc
acaaaccatgtttaccttttcttcattattcaaactccttactagactgc
tggatgcttgatttgactttcaggagtccaacagtgcacctagtgtagtt
gaccttaaaggatggataataaatgggggggggtgcctaatccaataata
aatctcattatcctcacacaacacttccgtgctaagtaaagttcaacaaa
caactgcaaaacagcatattctacctcacttcccactacattctacttcc
tggaatacactttacaaggcttcaggtaaattttagtgagaacaagaaag
cttgctattgtaattgcatctcctcactaaagccacctactatatagaac
atgaaaaccctccatctttaaacaatggaaatgctgtagtgttaaagaat
gtattacctgtaaatagactccagcagctagggttcctgcaatatactct
gaactcactggcctatatatta
gaattccaaatcaggattcgtgcaatactggatcatgcaaacaggatgga
gttgtggtgtccaaatcaagtagatgcagtgaagagcagagccgcagacc
tacccgtcagccatgtagccagagaagatgtgtgtctatgaagccctggc
cagtgcgctgtcaagaaggggacatcagatagtcaaggcttctgtgtagg
agtctgtgagaggcaaatggaaaagggcctcaagttctggtatgcagaag
ctaaccctactggtgatgccacagagaaagtctcatttacctcgcctttt
ggttaaatgattcatatcctgaacctatgctggtgcccagagtttgtctg
agagcccagttagccacactcccctctagtcttctgctgcccgctaactt
tggtttgctctcctcctgggaaagatgctgccttcgtcccttgctttgga
cctctgcgtcctcttttcagtcaaacaaggaaagaaaaggaatttttatg
tctaataaatggtgtatgtgaagactcccagcctctttcctgatagcagc
ttcccttacagctcaactctgcaagctccaccctgtcccagctccagtgt
acctgcactgacatgacacttacatacgctgacttgtcccttatcagccc
taaagttcactgccacccttctctggtgtcacctgggtgtccgtggttat
ataagcaagaggtacaagagtttgggttcaaaaataaaaataaataaaag
ccagtggggctggagagatggctcagcagtaagagcacttgctgctcctg
cagaggaccggggctcagtttccagcacattgtcagctcacatgtctgta
gctccagttttaaggaatccaacaccttctttcatcctccacgggctcta
ggtgcacatgtgatacacatgtgggcaaacattcatatacataaatgctt
gtctttctttttgtaaatagccatgatgaaccacgtctcagatccaccac
agatacatcaaatctcaatacgcagggtggtaagcagatgtcagctgttc
aggcagcttgggctaattaggcctatctcaaaagctaatgtataaaacaa
gcagacttagtagttatgtaggtattttgcttcaagcaggttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38115758_38116843
seq2: B6Ng01-068M20.b_52_1123 (reverse)

seq1  TAAT-TATAGGCCAGTTGGAGTTTCAGAAGTATATTGCAGAGACCCTAGC  49
      |||| |||||||||||  ||| ||||| ||||||||||||  ||||||||
seq2  TAATATATAGGCCAGT--GAG-TTCAG-AGTATATTGCAGGAACCCTAGC  46

seq1  TTGCTGGGAGTTCTATTTTAACAGGTAATACATTCTTTAACACCTACAGC  99
       |||| |||| |||||||  |||||||||||||||||||||| |||||||
seq2  -TGCT-GGAG-TCTATTT--ACAGGTAATACATTCTTTAACA-CTACAGC  90

seq1  ATTTCCATTTGTTTTAAAGATGGAGGGTTTTCATTGTTCTATATAGTAGG  149
      |||||||||   ||||||||||||||||||||| ||||||||||||||||
seq2  ATTTCCATT--GTTTAAAGATGGAGGGTTTTCA-TGTTCTATATAGTAGG  137

seq1  TGGCTTTTTAGTGAGGAGATGCAATTACAATAGCAAGCTTTCTTGTTCTC  199
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGC--TTTAGTGAGGAGATGCAATTACAATAGCAAGCTTTCTTGTTCTC  185

seq1  ACTAAAATTTACCTGAAGCCTTGTAAAGTGTATTCCAGGAAGTAGAATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTTACCTGAAGCCTTGTAAAGTGTATTCCAGGAAGTAGAATGT  235

seq1  AGTGGGAAGTGAGGTAGAATATGCTGTTTTGCAGTTGTTTGTTGAACTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGTGAGGTAGAATATGCTGTTTTGCAGTTGTTTGTTGAACTTT  285

seq1  ACTTAGCACGGAAGTGTTGTGTGAGGATAATGAGATTTATTATTGGATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCACGGAAGTGTTGTGTGAGGATAATGAGATTTATTATTGGATTA  335

seq1  GGCACCCCCCCCCATTTATTATCCATCCTTTAAGGTCAACTACACTAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCCCCCCCATTTATTATCCATCCTTTAAGGTCAACTACACTAGGT  385

seq1  GCACTGTTGGACTCCTGAAAGTCAAATCAAGCATCCAGCAGTCTAGTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTTGGACTCCTGAAAGTCAAATCAAGCATCCAGCAGTCTAGTAAG  435

seq1  GAGTTTGAATAATGAAGAAAAGGTAAACATGGTTTGTGCCATAGCACTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAATAATGAAGAAAAGGTAAACATGGTTTGTGCCATAGCACTTC  485

seq1  TAGTTTGCTGCTTTCCAAACAGCAGAAGAATTTATTTTCTTGGGTCTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCTGCTTTCCAAACAGCAGAAGAATTTATTTTCTTGGGTCTTTT  535

seq1  TTGAGGTTGGCTTGATTTTTTTTTAAAGGTTTATTTATTTATTTATTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTGGCTTGATTTTTTTTTAAAGGTTTATTTATTTATTTATTTAT  585

seq1  TTGTGTGTGGATTTTAGAGGACAACTTGTGGGAATAGGTTCTTTATTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGGATTTTAGAGGACAACTTGTGGGAATAGGTTCTTTATTTCC  635

seq1  ATGGTGTGGGTTCTGGCATCACTCTGGTTTTCTGGGTTGGTGGTTTGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGGGTTCTGGCATCACTCTGGTTTTCTGGGTTGGTGGTTTGCAC  685

seq1  CTTTCACTGCTAAGCCCATTTGCTGGCCCAGAGGTCGATTTAATCTAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTGCTAAGCCCATTTGCTGGCCCAGAGGTCGATTTAATCTAAAT  735

seq1  AGAAAGAACGAGAGCTGTACGATATGCACAACCTGCATAATTTTATTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACGAGAGCTGTACGATATGCACAACCTGCATAATTTTATTGTT  785

seq1  TATTTTCCAGAGAGTGAGTGAGTGTGGGTATGGGTCCTTTGGTAGGAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCAGAGAGTGAGTGAGTGTGGGTATGGGTCCTTTGGTAGGAATT  835

seq1  AGCATCTTCTGGGTGTTTACTGTATCTTTTACTGTTTACTTACATGGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTCTGGGTGTTTACTGTATCTTTTACTGTTTACTTACATGGTTT  885

seq1  TCATTTATTTCTTTAATAATTCTGAGAAACAAGTATTGTCATCTGTAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTTCTTTAATAATTCTGAGAAACAAGTATTGTCATCTGTAGTT  935

seq1  TGCAAAAGCAAAATTGAATTTAGAAAAGTTAAGTAATTTGTCTAAAGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGCAAAATTGAATTTAGAAAAGTTAAGTAATTTGTCTAAAGTTC  985

seq1  ATAGCTGTTAAGTTGTGCCTTTTAAACCAGGTTTTGCTACTGAGGTTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTTAAGTTGTGCCTTTTAAACCAGGTTTTGCTACTGAGGTTCAT  1035

seq1  CAATGCAGAGTTCTATCCATAGATTGCTTTAGAATTC  1086
      |||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGAGTTCTATCCATAGATTGCTTTAGAATTC  1072

seq1: chr16_37977250_37978428
seq2: B6Ng01-068M20.g_72_1217

seq1  GAATTCCAAATCAGGATTCGTGCAATACTGGATCATGCAAACAGGATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATCAGGATTCGTGCAATACTGGATCATGCAAACAGGATGGA  50

seq1  GTTGTGGTGTCCAAATCAAGTAGATGCAGTGAAGAGCAGAGCCGCAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTGTCCAAATCAAGTAGATGCAGTGAAGAGCAGAGCCGCAGACC  100

seq1  TACCCGTCAGCCATGTAGCCAGAGAAGATGTGTGTCTATGAAGCCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGTCAGCCATGTAGCCAGAGAAGATGTGTGTCTATGAAGCCCTGGC  150

seq1  CAGTGCGCTGTCAAGAAGGGGACATCAGATAGTCAAGGCTTCTGTGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGCTGTCAAGAAGGGGACATCAGATAGTCAAGGCTTCTGTGTAGG  200

seq1  AGTCTGTGAGAGGCAAATGGAAAAGGGCCTCAAGTTCTGGTATGCAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGAGAGGCAAATGGAAAAGGGCCTCAAGTTCTGGTATGCAGAAG  250

seq1  CTAACCCTACTGGTGATGCCACAGAGAAAGTCTCATTTACCTCGCCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTACTGGTGATGCCACAGAGAAAGTCTCATTTACCTCGCCTTTT  300

seq1  GGTTAAATGATTCATATCCTGAACCTATGCTGGTGCCCAGAGTTTGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATGATTCATATCCTGAACCTATGCTGGTGCCCAGAGTTTGTCTG  350

seq1  AGAGCCCAGTTAGCCACACTCCCCTCTAGTCTTCTGCTGCCCGCTAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAGTTAGCCACACTCCCCTCTAGTCTTCTGCTGCCCGCTAACTT  400

seq1  TGGTTTGCTCTCCTCCTGGGAAAGATGCTGCCTTCGTCCCTTGCTTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCTCTCCTCCTGGGAAAGATGCTGCCTTCGTCCCTTGCTTTGGA  450

seq1  CCTCTGCGTCCTCTTTTCAGTCAAACAAGGAAAGAAAAGGAATTTTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCGTCCTCTTTTCAGTCAAACAAGGAAAGAAAAGGAATTTTTATG  500

seq1  TCTAATAAATGGTGTATGTGAAGACTCCCAGCCTCTTTCCTGATAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAATGGTGTATGTGAAGACTCCCAGCCTCTTTCCTGATAGCAGC  550

seq1  TTCCCTTACAGCTCAACTCTGCAAGCTCCACCCTGTCCCAGCTCCAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTACAGCTCAACTCTGCAAGCTCCACCCTGTCCCAGCTCCAGTGT  600

seq1  ACCTGCACTGACATGACACTTACATACGCTGACTTGTCCCTTATCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTGACATGACACTTACATACGCTGACTTGTCCCTTATCAGCCC  650

seq1  TAAAGTTCACTGCCACCCTTCTCTGGTGTCACCTGGGTGTCCGTGGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCACTGCCACCCTTCTCTGGTGTCACCTGGGTGTCCGTGGTTAT  700

seq1  ATAAGCAAGAGGTACAAGAGTTTGGGTTCAAAAATAAAAATAAATAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAGAGGTACAAGAGTTTGGGTTCAAAAATAAAAATAAATAAAAG  750

seq1  CCAGTGGGGCTGGAGAGATGGCTCAGCAGTAAGAGCACTTGCTGCTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGGCTGGAGAGATGGCTCAGCAGTAAGAGCACTTGCTGCTCCTG  800

seq1  CAGAGGACCGGGGCTCAGTTTCCAGCACATTGTCAGCTCACATGTCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACCGGGGCTCAGTTTCCAGCACATTGTCAGCTCACATGTCTGTA  850

seq1  GCTCCAGTTTTAAGGAATCCAACACCTTCTTTCATCCTCCACGGGCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTTTAAGGAATCCAACACCTTCTTTCATCCTCCACGGGCTCTA  900

seq1  GGTGCACATGTGATACACATGTGGGCAAAACATTCATATACATAAAATGC  950
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  GGTGCACATGTGATACACATGTGGGC-AAACATTCATATACAT-AAATGC  948

seq1  TTGTCTTTCTTTTTGTAAATTAGCCATGATGACACACGTCTCAGATCCCA  1000
      ||||||||||||||||||| ||||||||||||  ||||||||||||||  
seq2  TTGTCTTTCTTTTTGTAAA-TAGCCATGATGAACCACGTCTCAGATCC--  995

seq1  ACACACAGATACAAATCAAATCTCAAATACGCAGGGGTGGTAAAGGCAAG  1050
      || |||||||||  |||||||||| |||||||| |||||||||  |||  
seq2  AC-CACAGATAC--ATCAAATCTC-AATACGCA-GGGTGGTAA--GCA--  1036

seq1  AAGGTCAGCAGTTCAAGGCCAGCCTGGGCTACATTAGGCCTCATCTCAAA  1100
       | |||||| |||||  | |||| ||||||| ||||||||| |||||  |
seq2  GATGTCAGCTGTTCA--GGCAGCTTGGGCTA-ATTAGGCCT-ATCTC--A  1080

seq1  AAAGCCAAAATAGTATAAAACAAAGCAGGACTTAGTTATGTTATGTTACG  1150
      ||||| ||    ||||||||| ||||| ||||||||   |||||||   |
seq2  AAAGCTAA---TGTATAAAAC-AAGCA-GACTTAGT--AGTTATGT--AG  1121

seq1  TTATTTTGGCTTTTCAAGACAGGGTTTCT  1179
       |||||||    |||||| |||| |||||
seq2  GTATTTTG---CTTCAAG-CAGGTTTTCT  1146