BAC Information

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BAC

Clone NameB6Ng01-069H20
Chromosome16 (Build37)
Map Location 63,958,011 - 63,959,139
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069H20.bB6Ng01-069H20.g
ACCDH887784DH887785
length1,2861,107
definitionDH887784|Mus musculus domesticus DNA, BAC clone: B6Ng01-069H20, 5' end.DH887785|Mus musculus domesticus DNA, BAC clone: B6Ng01-069H20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcagcagctatcctatggctctgccatctcaaaaatcttggag
tctccaagcaacttctatgttacagcttctcatttcagtgtctaaaatcc
acccacgatcttctgggttcctccaaagggctggtgtcagttctccagct
ctgccctctgtattactctaagctcaggttgatccactccactgccactg
ctgttttcggtgatcactgccatctccaatacactggggtcttcaactgt
aattaggcttcaccaatagcctctcatatgttctcttgatggtgccaacc
ttcaactcctttgcatgacccttcagtcctgggctgtcaactacaactga
gactgtaccttctccaatggacttctatagcctctgacagtgccaaatct
cagctgctcttcatgatccattcatgccttcaaaatcagtaccacctggg
tgactcttacacattaccaagtagagctacagcatgaggtactaccttga
ctatctctggaacacagcttcttcgtgctctctgaaaacacttcccagaa
gatttcatgtcaatgattttggtctcttcttagttaccactaatttctta
gctccatctaaccagcatcaattttcccagtagtctccttctcttcttga
ctatgaagccagaggcacatggccaaagctgccaagttctgctgcttgca
ggagttgaaacatgtcccctactctattatattatcactagctttttgtt
ttttcactgcttcactaagtttggctctcctggatcttgttctgtagatt
gtgattgaatttagagatctgtatgcttttctccggggattaaaggtgtg
taacaccaccacttgttttgtgccaggctgaccttaagctcagaaatctt
cttacttagtcttctgggatcatagacacatgcctcagatcttcacgata
gatcaggtcagaaattttatctccagctcagatctggatcaaaggtgagc
ttctaatcaggattgtagttcactcagatatagtcagttgacaacacttc
tcaatgtttttaaaaatgtgttagaaagtgtgaggagatacctttcagga
ataatattgtttcatagagaatgaaaaaaacagagattctctcttactga
gttccaacccggagtgagggttcttctcataggaagtgtaaagtgatgcg
aactacgcttaattgtcggatatctgtacacacagacgtgaagaatattt
gcatcgtcgtgggagtagggactgcccaatcatcat
gaattcctgacatggcatcaggacagaacggaggactcattgttatgctt
caggacatgggctgtaggagagctctctgtgctattctttccctgctctc
ccaccctggcagcatccaaactcagtggtgtaatcctgccgatgactaac
ttccattgtgcaaagaacttaattacatactgtggttcagttcctacttt
gccaggcagtcgctcagccataaaagaatgctgtagaaagtaagtgggga
aacgcaaacgaaattgaaagcacatgatcgtagtcaggaggcaaataagt
acttttcaaagaaaagccagaattctttaactgggagctggatcacactc
ctaaaacaaagaggagctggcatccaaggggaaatattttgtaatttcac
tgagtgagcaacattgtaacattacttgagctatttttactgttttgatg
actggtcaattggtgaaaatcatcgagaaaactgaaaaggtttttaaaac
cataaatttttgaaaatgaataatgatgctttttagaggaatgctcagtg
tatcttttatggggagataattgatttaatctttgatttataattataag
taacagggaacagggaagatagatcctatgacagtgtatgaagcagtgta
tgaagctgggtaggttgaagtttgggggtaactttctgcaacatacagaa
gccccgagtctggtttataatatcaagacacgatctttgaaatattaata
gctctgtctgtgagagcactgatttaaagcatgtatctataaataaaaaa
tgtttagtttcactaatggtgttgaagcccaacctacacttcccagtaac
aaagacctacctagaggtagcaatgcaatgtacctcaaaattaattgaca
ctcactcgtttgtttagcaatatatacgtttgtgtgtgtgtgtaaatgta
tgtcagcacaatctatttcagatgctaatccctgcatattttaaaccact
gagtactttaaacactgttctaatgcattttatagtttatttttatagct
ctattatgttaacgaagaagaactgaattgcaggtttcgactgtccatgt
ctgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63958011_63959139
seq2: B6Ng01-069H20.g_68_1174

seq1  GAATTCCTGACATGGCATCAGGACAGAACGGAGGACTCATTGTTATGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACATGGCATCAGGACAGAACGGAGGACTCATTGTTATGCTT  50

seq1  CAGGACATGGGCTGTAGGAGAGCTCTCTGTGCTATTCTTTCCCTGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATGGGCTGTAGGAGAGCTCTCTGTGCTATTCTTTCCCTGCTCTC  100

seq1  CCACCCTGGCAGCATCCAAACTCAGTGGTGTAATCCTGCCGATGACTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGGCAGCATCCAAACTCAGTGGTGTAATCCTGCCGATGACTAAC  150

seq1  TTCCATTGTGCAAAGAACTTAATTACATACTGTGGTTCAGTTCCTACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGTGCAAAGAACTTAATTACATACTGTGGTTCAGTTCCTACTTT  200

seq1  GCCAGGCAGTCGCTCAGCCATAAAAGAATGCTGTAGAAAGTAAGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAGTCGCTCAGCCATAAAAGAATGCTGTAGAAAGTAAGTGGGGA  250

seq1  AACGCAAACGAAATTGAAAGCACATGATCGTAGTCAGGAGGCAAATAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAAACGAAATTGAAAGCACATGATCGTAGTCAGGAGGCAAATAAGT  300

seq1  ACTTTTCAAAGAAAAGCCAGAATTCTTTAACTGGGAGCTGGATCACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAAGAAAAGCCAGAATTCTTTAACTGGGAGCTGGATCACACTC  350

seq1  CTAAAACAAAGAGGAGCTGGCATCCAAGGGGAAATATTTTGTAATTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAAAGAGGAGCTGGCATCCAAGGGGAAATATTTTGTAATTTCAC  400

seq1  TGAGTGAGCAACATTGTAACATTACTTGAGCTATTTTTACTGTTTTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGCAACATTGTAACATTACTTGAGCTATTTTTACTGTTTTGATG  450

seq1  ACTGGTCAATTGGTGAAAATCATCGAGAAAACTGAAAAGGTTTTTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCAATTGGTGAAAATCATCGAGAAAACTGAAAAGGTTTTTAAAAC  500

seq1  CATAAATTTTTGAAAATGAATAATGATGCTTTTTAGAGGAATGCTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTTTTGAAAATGAATAATGATGCTTTTTAGAGGAATGCTCAGTG  550

seq1  TATCTTTTATGGGGAGATAATTGATTTAATCTTTGATTTATAATTATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTATGGGGAGATAATTGATTTAATCTTTGATTTATAATTATAAG  600

seq1  TAACAGGGAACAGGGAAGATAGATCCTATGACAGTGTATGAAGCAGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGAACAGGGAAGATAGATCCTATGACAGTGTATGAAGCAGTGTA  650

seq1  TGAAGCTGGGTAGGTTGAAGTTTGGGGGTAACTTTCTGCAACATACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGGGTAGGTTGAAGTTTGGGGGTAACTTTCTGCAACATACAGAA  700

seq1  GCCCCGAGTCTGGTTTATAATATCAAGACACGATCTTTGAAATATTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGAGTCTGGTTTATAATATCAAGACACGATCTTTGAAATATTAATA  750

seq1  GCTCTGTCTGTGAGAGCACTGATTTAAAGCATGTATCTATAAATAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTGTGAGAGCACTGATTTAAAGCATGTATCTATAAATAAAAAA  800

seq1  TGTTTAGTTTCACTAATGGTGTTGAAGCCCAACCTACACTTCCCAGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTTTAGTTTCACTAATGGTGTTGAAGCCCAACCTACACTTCCCA-GTAA  849

seq1  CAAAGACCTACCTAGAGGTAGCAATGCAATGTACCTCAAAATTAATTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCTACCTAGAGGTAGCAATGCAATGTACCTCAAAATTAATTGAC  899

seq1  ACTCACTCGTTTGTTTTAGCAAATATATACGTTTGTGTGTGTGTGTAAAA  950
      ||||||||||||| |||||| ||||||||||||||||||||||||| |||
seq2  ACTCACTCGTTTG-TTTAGC-AATATATACGTTTGTGTGTGTGTGT-AAA  946

seq1  TGTATGTCAGCACAATTCTATTTCAGATGCTAATCCCTGCATATTTTAAA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTATGTCAGCACAA-TCTATTTCAGATGCTAATCCCTGCATATTTTAAA  995

seq1  CCACTGAAGTTACTTTAAACACTGTTCTAATTGCATTTTTATAGTTTATT  1050
      |||||||   |||||||||||||||||||| |||| ||||||||||||||
seq2  CCACTGA--GTACTTTAAACACTGTTCTAA-TGCA-TTTTATAGTTTATT  1041

seq1  TTTAAATAAGCTCTATTATGTTAAAACGAAAGAGAGAAACTGAATTGCAT  1100
      ||||    ||||||||||||||  |||||   |||  |||||||||||| 
seq2  TTTA---TAGCTCTATTATGTT--AACGA---AGAAGAACTGAATTGCAG  1083

seq1  GTTTTTCGAACTGTCACATGGTCTGATGA  1129
      |  ||||| |||||| ||| |||||||||
seq2  G--TTTCG-ACTGTC-CAT-GTCTGATGA  1107