BAC Information

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BAC

Clone NameB6Ng01-070B11
Chromosome12 (Build37)16 (Build37)
Map Location 90,151,097 - 90,151,30861,419,923 - 61,420,901
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream geneNrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070B11.bB6Ng01-070B11.g
ACCDH888199DH888200
length5391,098
definitionDH888199|Mus musculus domesticus DNA, BAC clone: B6Ng01-070B11, 5' end.DH888200|Mus musculus domesticus DNA, BAC clone: B6Ng01-070B11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,151,097 - 90,151,308)(61,419,923 - 61,420,901)
sequence
gaattctttgattatttttatggttgttcttttacatcttgtgtcctgga
gttgattagataaatttcactggaaaaacattttttacaaagctggtagg
attttggagagaagatgctggcttgatctgttctctctctctctctctct
ctctctctctctctctctctctctctctctctctccatctttgttggtgg
gaatgcaagcttgtaaaactaccctgggggttattctggtggttcctttg
aatattggacttaatactcccggacgctccgactataccacgcctgagta
tatatccagaataggtcccaactagaaagaaggacacatgctcaactatt
ttcatagcagccttatttatcctacccaaaatctggaaataacccgcatg
cccctcctccaaggattggtggctgaatatgtggcacatctacaccacgt
agaacggctcttctatttaaaaagaatgaatttttgaaattcctaggcaa
atggatggagctggagggcatgagcgtgagtgaggtaac
gaattcaaaaaggtcaacaagctgaagtccccaagtgaggatgcctcaat
ctcacttgggagggagaagaaagcaatcacaagtggggagggagggaggg
acctgggagggaaagtggatgggggagctagatgactggcttaaactaaa
ctgggcatgttacatacatactggacattgtatacatacaattataagag
ggaatgctatgatactggtagcaaaaatgcaatattctctacactgctag
gtttcagaaaacacagaactacactgcattgtatttggcagagttgaggt
aatataagaaatggcaggagacccaataagactgatattcagtcttaagc
atattcagtactacaggtggcatgttgaatactggaaatcactttgatgt
aatggacatagactgatagtttatagaacctgggtattagttgctccata
attgtctttttttctgcatataaaatcacttggtaagtcactgatattgt
attgtagaatacaatattaaaggtttgattctgatttatggcttaatgct
gcaacgattttgttcttgattaattatagaagtgaatgattatattgtgg
tcacattttcttttgaaaaggttgacatagaatataatttcctgaacttt
accatataaaatagctcatcgtctcaagacaaaactatatttcattgaag
tacagtacacatgaggttgatgcaacaaaattgtatgttatacctcagag
agtagcaggaggtacttctatttcttttttttttttttttcatttctatg
aagagggattgactgggcatactttttattcttttttaatgatacatact
gacttgaagtgtcttgtgaactgctgtttgaatgactttaacaagggtac
tggagaattcgcaaaaggactgtgtccctaaatccaatcctttaatttaa
aagggcaaaatcattctaattttccccaaacaaatacatttctaacttgt
gctctcaactttgatccctcccttccaagaggaactcccctatctttgct
atcactgggcgacctattcttatacagatgggattctaaatcactccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90151097_90151308
seq2: B6Ng01-070B11.b_370_582 (reverse)

seq1  GTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAA  50
      ||||||||||||| | | ||||||||||| |||||||||||| |||||||
seq2  GTTACCTCACTCACGCTCATGCCCTCCAGCTCCATCCATTTGCCTAGGAA  50

seq1  TTTCATAAATTCATTCTTTTT-AATAGCTAAGTAGTACTCCATTGTGTAG  99
      ||||| ||||||||||||||| |||||   ||  || || | | ||||||
seq2  TTTCAAAAATTCATTCTTTTTAAATAGAAGAGCCGTTCTACGTGGTGTAG  100

seq1  ATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTC  149
      |||| |||||| ||| |   ||| ||||  |  |||||||||  ||||| 
seq2  ATGTGCCACATATTCAGCCACCAATCCTTGGAGGAGGGGCATGCGGGTTA  150

seq1  TTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGC  199
      ||||||| || ||| ||  |||||||||||||||||||| ||||| ||||
seq2  TTTCCAGATTTTGGGTAGGATAAATAAGGCTGCTATGAAAATAGTTGAGC  200

seq1  ATGTGTCCTTCTT  212
      |||||||||||||
seq2  ATGTGTCCTTCTT  213

seq1: chr16_61419923_61420901
seq2: B6Ng01-070B11.g_193_1163 (reverse)

seq1  GGGAGTGATTT-GAGTCCCATCTGTTTAAGAACTGG-CTGCCAGTGATAG  48
      ||||||||||| || |||||||||| ||||||  || |  ||||||||||
seq2  GGGAGTGATTTAGAATCCCATCTGTATAAGAATAGGTCGCCCAGTGATAG  50

seq1  CAAAAGATAGGGAAGATCCATCATTGTAAGTGAGGGATCAATGACTGAGA  98
      | |||||||||| || ||| || ||| ||| |||||||||| |  |||||
seq2  C-AAAGATAGGGGAGTTCC-TC-TTGGAAGGGAGGGATCAAAG-TTGAGA  96

seq1  GCACAAGTTGAGAGAGTGTTATTTTGTATTGGGGAAAAGTCAGAATGATA  148
      ||||||||| ||| | |||   ||||| |||||||||| | |||||||| 
seq2  GCACAAGTT-AGA-AATGT--ATTTGT-TTGGGGAAAA-TTAGAATGATT  140

seq1  TTGACCCTTTCTAAGTCAGAAGGAATTGGATTTAAGGGACACAGTTCCTT  198
      ||| |||||| ||| | | |||| ||||||||| |||||||||| |||||
seq2  TTG-CCCTTT-TAAATTA-AAGG-ATTGGATTT-AGGGACACAG-TCCTT  184

seq1  CTGCGAGTTCTCCATGTA-CCTTGTTAAAGTCATTCAAACAGCAGTTACA  247
       ||||| ||||||| ||| |||||||||||||||||||||||||||| ||
seq2  TTGCGAATTCTCCA-GTACCCTTGTTAAAGTCATTCAAACAGCAGTT-CA  232

seq1  CAAGACACTTCAAGTCAGTATGTATCATT-AAAAAGAAT-AAAAGTATGC  295
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  CAAGACACTTCAAGTCAGTATGTATCATTAAAAAAGAATAAAAAGTATGC  282

seq1  CCAGTCAATCCCTCTTCATAGAAATG-AAAAAAAAAAAAAAAGAAATAGA  344
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGTCAATCCCTCTTCATAGAAATGAAAAAAAAAAAAAAAAGAAATAGA  332

seq1  AGTACCTCCTGCTACTCTCTGAGGTATAACATACAATTTTGTTGCATCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCCTGCTACTCTCTGAGGTATAACATACAATTTTGTTGCATCAA  382

seq1  CCTCATGTGTACTGTACTTCAATGAAATATAGTTTTGTCTTGAGACGATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTGTACTGTACTTCAATGAAATATAGTTTTGTCTTGAGACGATG  432

seq1  AGCTATTTTATATGGT-AAGTTCAGG-AATTATATTCTATGTCAACCTTT  492
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  AGCTATTTTATATGGTAAAGTTCAGGAAATTATATTCTATGTCAACCTTT  482

seq1  TCAAA--GAAATGTGACCACAATATAATCATTCACTTCTATAATTAATCA  540
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAAATGTGACCACAATATAATCATTCACTTCTATAATTAATCA  532

seq1  AGAACAAAATCGTTGCAGCATTAAGCCATAAATCAGAATCAAACCTTTAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAATCGTTGCAGCATTAAGCCATAAATCAGAATCAAACCTTTAA  582

seq1  TATTGTATTCTACAATACAATATCAGTGACTTACCAAGTGATTTTATATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTCTACAATACAATATCAGTGACTTACCAAGTGATTTTATATG  632

seq1  CAGAAAAAAAGACAATTATGGAGCAACTAATACCCAGGTTCTATAAACTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAGACAATTATGGAGCAACTAATACCCAGGTTCTATAAACTA  682

seq1  TCAGTCTATGTCCATTACATCAAAGTGATTTCCAGTATTCAACATGCCAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTATGTCCATTACATCAAAGTGATTTCCAGTATTCAACATGCCAC  732

seq1  CTGTAGTACTGAATATGCTTAAGACTGAATATCAGTCTTATTGGGTCTCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTACTGAATATGCTTAAGACTGAATATCAGTCTTATTGGGTCTCC  782

seq1  TGCCATTTCTTATATTACCTCAACTCTGCCAAATACAATGCAGTGTAGTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCTTATATTACCTCAACTCTGCCAAATACAATGCAGTGTAGTT  832

seq1  CTGTGTTTTCTGAAACCTAGCAGTGTAGAGAATATTGCATTTTTGCTACC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTCTGAAACCTAGCAGTGTAGAGAATATTGCATTTTTGCTACC  882

seq1  AGTATCATAGCATTCCCTCTTATAATTGTATGTATACAATGTCCAGTATG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATAGCATTCCCTCTTATAATTGTATGTATACAATGTCCAGTATG  932

seq1  TATGTAACATGCCCAGTTTAGTTTAAGCCAGTCATCTAG  979
      |||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACATGCCCAGTTTAGTTTAAGCCAGTCATCTAG  971