BAC Information

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BAC

Clone NameB6Ng01-071F16
Chromosome8 (Build37)16 (Build37)
Map Location 91,175,651 - 91,176,07421,136,422 - 21,137,623
singlet/doubletsingletsinglet
Overlap geneNod2
Upstream geneZfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik
Downstream geneCyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F16.bB6Ng01-071F16.g
ACCDH889079DH889080
length9781,189
definitionDH889079|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F16, 5' end.DH889080|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,175,651 - 91,176,074)(21,136,422 - 21,137,623)
sequence
gaattccaacttcctcttctagtctttgtgggcactgcatacactgttgc
atataaatgcatacaagctaagcagccatatgcataaaataaaataagta
aacctaaagagaaggtgatacccaacacacactcatacacaaacacatac
acataaacacacatacacacatacactcatacaaaaatatgcacataagc
acacacatatgcacactcatacacaaacacatacacataaacgcacatac
acacatacactcatacacaaatatgcacataaacacacacacatgcacac
atatacaaacacgcacataaacacacacatatgcacactcatacacaaac
acatacacataaacatacatatacataaacacacacactaatgcacaaac
agatacacacactcatacacacatatactcatacacaaacacatacatac
gcacactcatacacacacatacacacacacacataaacacacacatacac
acactcatacccaaacacatacacataaacacacacactcatgaacaaac
acatacacacacatactcatacatacactcatacacaaagacacacaaac
acacacacataaacacacaatacacactcatatataaacacacacataag
cacactcatacacacacacacatcaacacacacacacactcaagttgcct
tcattctgacaagtaatgggaaggactacaagcacacatcaccacacctg
ccttgtcttcatggtgttgtttgtttttgtttttgtttttttattttttt
aattttttttttttttttggtttttttcgagacagggtttctctgtgtag
ccctggctgtcctggaactcactttgtctaccaggctggcctcgaactta
gaaaatccgcctgcctctgcctcccgagtgctgagattaaaggcgtgtgc
caccatgcccggcttttgtttttatttt
gaattcctaaaattatactagtaattatttagcccatttgtaataggact
tatattagattgcaattagaactctgccagtcttcacatgtcatgagtca
attgcttctgagacagaaaacaggcatttacaaccttgaacacattttaa
gaggtagtaaaacaattacccaaaggtcataaaaggaaactaacaattta
ttataggtacaagaacagaggataaaatattgactgggtttatctatgca
aaatttaaataacttagtcacaaaaattatgatctttaactgtctatgaa
cttctggcaccagtgagagaaaattaatgtttagccagatatttactctc
aatggatataggtgtaaacagctctgttgtaaacttattattcaatttat
gatttgaatttcagtttgaacttttagtgaacttttgtaaaaagcaaggg
caggggatatttgggaaaaaatcacgtgactttcttctcctggctcaata
agagtttatgactccaaatctccctccagcctgacaagggagaggttaag
cttctgggcaagagagaaaaaaagccctagggattaatcctttacctaat
cccccactgttagactacaggtgatagtcacccaagcctatggtttttaa
cctcaaaatgagcaagaaacttattaggatttttttaggagccagtagct
gcagcatttagtgtagttagagagatagaaggtcagagaccatcagcctt
taaagctacctctacgtccaacactgtgttccccttcaacccattccaga
cctggcaagctggtggtaatttatgagaccccagaccactaccagaaaaa
gaacgaccatctagggagtacagcaggtaaaggagggaggccaataaagt
tgctgatttattgcatttggttttgtttgttgtgagacaagtagctcaga
ctaacctagactttttaccttcctgtccattctttcaaatgtgaagatta
cagtgtatggagtactactcctgacagattttgttgtttcttgatgatgt
atatttaataagcattaagtcactatatacagcacagcttgaaaattttt
gcatggtgtgtcccaccacagaacagcccaagcttcaagagggcacttag
agcttacaccaaaggtcccagcataagtctgctagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_91175651_91176074
seq2: B6Ng01-071F16.b_583_1007 (reverse)

seq1  GGGCGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG  50
      |||| |||||||||| |||||||||| ||||||| |||||||||||||||
seq2  GGGCATGGTGGCACACGCCTTTAATCTCAGCACTCGGGAGGCAGAGGCAG  50

seq1  GCGGA-TTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  99
      ||||| ||||| |||| ||||||||||||||  |||||||||||||||||
seq2  GCGGATTTTCTAAGTTCGAGGCCAGCCTGGTAGACAAAGTGAGTTCCAGG  100

seq1  ACAGCCAAGGCTACACAGAGAAACCCTGTCTC--AAAAAACCAAAAAAAA  147
      ||||||| ||||||||||||||||||||||||  ||||||||||||||||
seq2  ACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAACCAAAAAAAA  150

seq1  ACACACA---CAAAAAAAAACCTGACTAAGAC--------ACCGGGCTCT  186
      | | | |    |||||| ||    || || ||        ||    |  |
seq2  AAAAAAAATTAAAAAAATAAAAAAACAAAAACAAAAACAAACAACACCAT  200

seq1  G--CCCCAGGCCAGTG---------GCAGTTACAAACTGGCCTATTTCTC  225
      |    | ||||  |||         |   ||  |  |   || ||| || 
seq2  GAAGACAAGGCAGGTGTGGTGATGTGTGCTTGTAGTCCTTCCCATTACTT  250

seq1  TGCCG--CGTAGG-ATCTT-AGTGCCTAAAACCTCTGATGGTCCCTTCCT  271
        | |   | ||| | ||| ||||           ||   ||   ||  |
seq2  GTCAGAATGAAGGCAACTTGAGTG-----------TGTGTGTGTGTTGAT  289

seq1  CACCGAGTCCCCAGCACTCGGGTCTGAAGGCTGAGCTCCT-GAGGATTGT  320
          | ||    |  | |  |  || | |  || | |  |  | || |||
seq2  GTGTGTGTGTGTATGAGT--GTGCTTATGTGTGTGTTTATATATGAGTGT  337

seq1  GGCAGAGGGGCTGCATGCAGTGTGTGCTGCTGAATTCGTAGGAGGAAGCA  370
       | |  | |  |  |||  ||||||| |  ||  |   |  | | | |  
seq2  -GTATTGTGTGTTTATG-TGTGTGTGTT--TGTGTGTCTTTGTGTATG--  381

seq1  AGGGCCTTCCGTCAAGGGTATGTGTGTGTATGTGTGTGTTGCTATCAATG  420
      || |   |  || | | |||||||||||||||||| ||||       |||
seq2  AGTG---TATGT-ATGAGTATGTGTGTGTATGTGTTTGTT------CATG  421

seq1  AGTG  424
      ||||
seq2  AGTG  425

seq1: chr16_21136422_21137623
seq2: B6Ng01-071F16.g_65_1253

seq1  GAATTCCTAAAATTATACTAGTAATTATTTAGCCCATTTGTAATAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAATTATACTAGTAATTATTTAGCCCATTTGTAATAGGACT  50

seq1  TATATTAGATTGCAATTAGAACTCTGCCAGTCTTCACATGTCATGAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGATTGCAATTAGAACTCTGCCAGTCTTCACATGTCATGAGTCA  100

seq1  ATTGCTTCTGAGACAGAAAACAGGCATTTACAACCTTGAACACATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTGAGACAGAAAACAGGCATTTACAACCTTGAACACATTTTAA  150

seq1  GAGGTAGTAAAACAATTACCCAAAGGTCATAAAAGGAAACTAACAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGTAAAACAATTACCCAAAGGTCATAAAAGGAAACTAACAATTTA  200

seq1  TTATAGGTACAAGAACAGAGGATAAAATATTGACTGGGTTTATCTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTACAAGAACAGAGGATAAAATATTGACTGGGTTTATCTATGCA  250

seq1  AAATTTAAATAACTTAGTCACAAAAATTATGATCTTTAACTGTCTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAATAACTTAGTCACAAAAATTATGATCTTTAACTGTCTATGAA  300

seq1  CTTCTGGCACCAGTGAGAGAAAATTAATGTTTAGCCAGATATTTACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCACCAGTGAGAGAAAATTAATGTTTAGCCAGATATTTACTCTC  350

seq1  AATGGATATAGGTGTAAACAGCTCTGTTGTAAACTTATTATTCAATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATATAGGTGTAAACAGCTCTGTTGTAAACTTATTATTCAATTTAT  400

seq1  GATTTGAATTTCAGTTTGAACTTTTAGTGAACTTTTGTAAAAAGCAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATTTCAGTTTGAACTTTTAGTGAACTTTTGTAAAAAGCAAGGG  450

seq1  CAGGGGATATTTGGGAAAAAATCACGTGACTTTCTTCTCCTGGCTCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATATTTGGGAAAAAATCACGTGACTTTCTTCTCCTGGCTCAATA  500

seq1  AGAGTTTATGACTCCAAATCTCCCTCCAGCCTGACAAGGGAGAGGTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTATGACTCCAAATCTCCCTCCAGCCTGACAAGGGAGAGGTTAAG  550

seq1  CTTCTGGGCAAGAGAGAAAAAAAGCCCTAGGGATTAATCCTTTACCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGCAAGAGAGAAAAAAAGCCCTAGGGATTAATCCTTTACCTAAT  600

seq1  CCCCCACTGTTAGACTACAGGTGATAGTCACCCAAGCCTATGGTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACTGTTAGACTACAGGTGATAGTCACCCAAGCCTATGGTTTTTAA  650

seq1  CCTCAAAATGAGCAAGAAACTTATTAGGATTTTTTTAGGAGCCAGTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATGAGCAAGAAACTTATTAGGATTTTTTTAGGAGCCAGTAGCT  700

seq1  GCAGCATTTAGTGTAGTTAGAGAGATAGAAGGTCAGAGACCATCAGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTTAGTGTAGTTAGAGAGATAGAAGGTCAGAGACCATCAGCCTT  750

seq1  TAAAGCTACCTCTACGTCCAACACTGTGTTCCCCTTCAACCCATTCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACCTCTACGTCCAACACTGTGTTCCCCTTCAACCCATTCCAGA  800

seq1  CCTGGCAAGCTGGTGGTAATTTATGAGACCCCAGACCACTACCAGAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAAGCTGGTGGTAATTTATGAGACCCCAGACCACTACCAGAAAAA  850

seq1  GAACGACCATCTAGGGAGTACAGCAGGT-AAGGAGGGAGGCCAATAAAGT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAACGACCATCTAGGGAGTACAGCAGGTAAAGGAGGGAGGCCAATAAAGT  900

seq1  TGCTGATTTATTGCATTTGGTTTTGTTTGTTGTGAGACAAGTAGCTCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTATTGCATTTGGTTTTGTTTGTTGTGAGACAAGTAGCTCAGA  950

seq1  CTAACCTAGAACTTTTTACCTTCCTGTCCATTCTTTCAAATGTGAAGATT  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTAG-ACTTTTTACCTTCCTGTCCATTCTTTCAAATGTGAAGATT  999

seq1  ACAAGTGTATGGAGTACTACTCCTGACAGATTTTGTTGTTTTCTTTGATT  1049
      || ||||||||||||||||||||||||||||||||||||||   |||| |
seq2  AC-AGTGTATGGAGTACTACTCCTGACAGATTTTGTTGTTT--CTTGA-T  1045

seq1  GATGTATAATTTAATAAGCAATAAAGTTCACTAATATTACAGGCACAGCT  1099
      ||||||| |||||||||||| |||   ||||| ||| |||| ||||||||
seq2  GATGTAT-ATTTAATAAGCATTAA--GTCACT-ATA-TACA-GCACAGCT  1089

seq1  TGAAACATTTTTGCAT-GTGTGTCCACACACAAGACCAGCCCAAGC-TCA  1147
      ||||| |||||||||| |||||||| |||   ||| |||||||||| |||
seq2  TGAAA-ATTTTTGCATGGTGTGTCC-CACCACAGAACAGCCCAAGCTTCA  1137

seq1  AGAGGGCACTTTAGAGC-TACACCAAAGGTTCCCAGCAGTAGAGCCTGCT  1196
      ||||||||| ||||||| ||||||||||| |||||||| || || |||||
seq2  AGAGGGCAC-TTAGAGCTTACACCAAAGG-TCCCAGCA-TA-AGTCTGCT  1183

seq1  AGCATT  1202
      ||||||
seq2  AGCATT  1189