BAC Information

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BAC

Clone NameB6Ng01-071L20
Chromosome16 (Build37)
Map Location 45,632,504 - 45,633,607
singlet/doubletsinglet
Overlap geneBC016579
Upstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2
Downstream geneTmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071L20.b
ACCDH889352
length1,074
definitionDH889352|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagtgagtccttgggccttatcactgagttcattttaactttt
tttttttttgaccgagtctaactatgttgcattggttgacctggaactca
gtgtcaaaccaaccaaccaaccaaaaacaaacaaacaaaaaaccaagcca
gtcttaccttgaacttacccacttcttcagctttgggaatgctgggatta
cagacacgtgcatggctgtcagggagactcaactggttagaccatttaga
tctcacttgagtgttgagttgagctttgatttgtggtcagcttacacttt
ttttcctcttcctccagaaccccaaaccagtgaattcctagccagagtga
attctcctttgtcctgaatccatttgcttccatgggtgctatgtaagatg
atcctcagtgacatgggtgttcttttcttgttgtgtgtttagctcacgga
cacgtatagacagtccccatctctgagtcgttttttcacttctgctgata
tcttggatttcaggtaagagctcagatctttacatcttgccatctttctc
agaagatcacctactcacctacccagcttatctccattcacccccaatga
tctccctgagctttggagcaggagaagacttgggagtaaaaaacacagtg
tcacgctgcagaggtgcacggcaacatcttagctcggaaaagcagaaaga
aggaaatcgtggactaattatgtgattcaattatggtcaccctcaaagag
gaaaagcatgtctatccaagagaaacatttctgtttaacatagatacaga
aatcattcatggcagaataaacacaatctcagagagggacatgatttatg
tgctgcagcggtgactcagggtgactggcctcacacaccttacgacataa
aatgcactgtctctctgtctcctttcttagtgctacaccaatgatgaata
cactcaccctacaaatgacactctgcttgcctcatttttttgctgaggta
tattactatgtcagtgtcgtgtatgtttacgtacagtttcaaaatatttt
tatcaatattttacatcgtttttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45632504_45633607
seq2: B6Ng01-071L20.b_38_1111 (reverse)

seq1  AAAAAACTGTATGTAAAATATTTAATAAAAATATTTTTAAAAACTGTATG  50
      |||||||   |||||||||| || |||||||||||||   |||||||| |
seq2  AAAAAAC--GATGTAAAATA-TTGATAAAAATATTTT--GAAACTGTACG  45

seq1  TATACATACATGGACACTGAATATAGTAAATATATGCACAGACAAAAAAA  100
      || |||||||  ||||||| | ||||| ||||||  | ||| ||||||||
seq2  TAAACATACA-CGACACTG-ACATAGT-AATATA-CCTCAG-CAAAAAAA  90

seq1  TGAAGGCAAGCAGAGTTGTTAATTTTGTAGGGGTGAGTGTTATTCATCAT  150
      || |||||||||||| ||| |  |||||| ||||||||| ||||||||||
seq2  TG-AGGCAAGCAGAG-TGTCA--TTTGTA-GGGTGAGTG-TATTCATCAT  134

seq1  TGGTGGTAGCACTAAAGAAAGGAGACAGGAGAGACAGGTGCATTTTTTAT  200
      |||| |||||||| ||||||||||||| |||||||| |||||  ||||||
seq2  TGGT-GTAGCACT-AAGAAAGGAGACA-GAGAGACA-GTGCA--TTTTAT  178

seq1  GTTCGTAATGTTGTGTGAGGCCAGTCACCCCTGAGTCACCGCTGCAGCAC  250
      | |||||| | |||||||||||||||| ||||||||||||||||||||||
seq2  G-TCGTAA-GGTGTGTGAGGCCAGTCA-CCCTGAGTCACCGCTGCAGCAC  225

seq1  ATAAATCATGTCCCTCTCTGAGATTTGTGTTTATTTCTGCCCTGAATTGA  300
      ||||||||||||||||||||||| ||||||||| ||||||| |||| |||
seq2  ATAAATCATGTCCCTCTCTGAGA-TTGTGTTTA-TTCTGCCATGAA-TGA  272

seq1  TTTCTGTATCTATTGTTAAACAGAAATGTTTCTCTTGGATAGACATGCTT  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATCTA-TGTTAAACAGAAATGTTTCTCTTGGATAGACATGCTT  321

seq1  TTCCTCTCTGAGGGTGACCATAATTGAATCACATAATTAGTCCACGATTT  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTGAGGGTGACCATAATTGAATCACATAATTAGTCCACGATTT  371

seq1  CCTTCTTTCTGCTTTTCCGAGCTAAGATGTTGCCCTGCACCACTGCAGCG  450
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  CCTTCTTTCTGCTTTTCCGAGCTAAGATGTTGCCGTGCACCTCTGCAGCG  421

seq1  TGACACTGTGTTTTTTACTCCCAAGTCTTCTCCTGCTGCAAAGCTCAGGG  500
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGACACTGTGTTTTTTACTCCCAAGTCTTCTCCTGCTCCAAAGCTCAGGG  471

seq1  AGATCATTGGGGGTGAATGGAGATAAGCTGGGTAGGTGAGTAGGTGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTGGGGGTGAATGGAGATAAGCTGGGTAGGTGAGTAGGTGATCT  521

seq1  TCTGAGAAAGATGGCAAGATGTAAAGATCTGAGCTCTTACCTGAAATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAAGATGGCAAGATGTAAAGATCTGAGCTCTTACCTGAAATCCA  571

seq1  AGATATCAGCAGAAGTGAAAAAACGACTCAGAGATGGGGACTGTCTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAGCAGAAGTGAAAAAACGACTCAGAGATGGGGACTGTCTATAC  621

seq1  GTGTCCGTGAGCTAAACACACAACAAGAAAAGAACACACATGTCACTGAG  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGTCCGTGAGCTAAACACACAACAAGAAAAGAACACCCATGTCACTGAG  671

seq1  GATCATCTTACATAGCACCCATGGAAGCAAATGGATTCAGGACAAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCTTACATAGCACCCATGGAAGCAAATGGATTCAGGACAAAGGAG  721

seq1  AATTCACTCTGGCTAGGAATTCACTGGTTTGGGGTTCTGGAGGAAGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTCTGGCTAGGAATTCACTGGTTTGGGGTTCTGGAGGAAGAGGA  771

seq1  AAAAAAGTGTAAGCTGACCACAAATCAAAGCTCAACTCAACACTCAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTGTAAGCTGACCACAAATCAAAGCTCAACTCAACACTCAAGTG  821

seq1  AGATCTAAATGGTCTAACTAGTTGAGTCTCCCTGACAGCCATGCACGTGT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGATCTAAATGGTCTAACCAGTTGAGTCTCCCTGACAGCCATGCACGTGT  871

seq1  CTGTAATCCCAGCATTCCCAAAGCTGAAGAAGTGGGTAAGTTCAAGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCCAGCATTCCCAAAGCTGAAGAAGTGGGTAAGTTCAAGGTAA  921

seq1  GACTGGCTTGGTTTTTTGTTTGTTTGTTTTTGGTTGGTTGGTTGGTTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTGGTTTTTTGTTTGTTTGTTTTTGGTTGGTTGGTTGGTTTGA  971

seq1  CAATGAGTTCTAGGTCAACCAATGCAACATAGTTAGACTCGGTCAAAAAA  1050
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTTCCAGGTCAACCAATGCAACATAGTTAGACTCGGTCAAAAAA  1021

seq1  AAAAAAAGTTAAAATGAACTCATTGATAAGGCCCAAGTGACTCACTGGGA  1100
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  AAAAAAAGTTAAAATGAACTCAGTGATAAGGCCCAAG-GACTCACTGGGA  1070

seq1  ATTC  1104
      ||||
seq2  ATTC  1074