BAC Information

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BAC

Clone NameB6Ng01-071M19
Chromosome1 (Build37)16 (Build37)
Map Location 50,832,664 - 50,832,71989,074,483 - 89,075,652
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071M19.bB6Ng01-071M19.g
ACCDH889394DH889395
length1,0041,158
definitionDH889394|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M19, 5' end.DH889395|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,664 - 50,832,719)(89,074,483 - 89,075,652)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtgtgagttcatttctaggtcttcaattctattccattggtct
acctgtctgttgctataccagtgccatgcagtttttattacaattgctct
gtagtttaggtcagacatggtgattccactagagactcttttatcattga
gaagagtttttgctatcctagggtttttgttattccagatgaatttgcaa
attgccctttttaactcagtgaagaattgagttgaaattttgatggggat
tgcattgaatctggagattgcttttgacaagatagccattttaactatat
taatcctgccaatccatgaacatgggagatctatcttctgagattttctt
caatttctttcttcagagacttatagttcttattatacagatctttcagt
tccttaattagaatcacaccaaagtattttatattatttgtgactatttt
gaggggtgttgttttcctaatttctttctcagcctgattatcctttgtgt
agagaaaggccattgatttgtttgagttaattttatatccagctacttcc
atgaagctgtttatcaggtttagtagttctctggtgcaatttttagggtc
atttatatatatactatcatatcatctgtgaatagtgatattttgacttc
ttcctttccaatttgtatccccttgatgtccttttgttcattgaattgct
ctggctaggacttcaagtactatattgaataggtagggagaaagtgggca
gccttgtctagtccctgattttagtgggattgcttcaagtttctctccat
ttagtttgatgttggctactggtttgctgctgtatattgcttttattatg
tttaggtatgggccttgaattcctgatctttccagggcatttatcatgaa
tgggtgcttgtcatgcatgtcaaatgctttctcagcatctaaaaagatga
tcat
gaattcaatcttcaggaatcagatatatcatggctactttctgctgaaca
aatatatctcaggccaataaaggcattagcaatgaagaaagaacttatca
ttttgtcaggaaaatctgtaaaaccatgctattaaaaacaagaatgaacg
aataaagaatctatgaaatttaaataagcaatcttccaaagtggtacact
taattcttcaagtaatcttgtaactcataagaccttcagagagatctagt
tgattagccgtataatataacctatggctaaaaataaagagaaaattcag
aaatgttccccactgcctgctttgatagtaaagataatcctactaactat
acttgtgaattatgtaatgcagcactaaagaaattcatcaatttccacat
tacccatctgcacactcatcctaagagaagcagtgtttttatccccaata
tcctactactgtgctttatcactaaactctactaccctacaaagtggaca
ttaaatcgtgaccaacagccattgcaacagaagtagaaatggcgtaacac
atacccactcttctttacactttcaatatactttacaatcaagaatttgt
aggaatcaggattgagcctgatttccttttgtttatatttatctgtctgt
ggtgagtggtgttagaaaaatatcccagacatgctgtaaaaccttacgac
ttctaaaaaatcatgattcctctagacttttgcagcagctatccttgtgt
ttagcctgttctgccggtgagtcttttatgagcatctctcgttagtccac
gatgaacacataagccaaaggcagagatgttctaagcaattccttcctgg
aaaatgctctagaaagggtagactctgtgctgagctgttagatacgtgac
cccactcagctttattcagttaagcagatatctcattccccattttaaca
caaaatctgtgtgtgaatggcaccagtaaataatgtctcatatgttaaat
tgattaaattacatttatcacttatcctgtactccctaatatggtctaca
atacccataagttgagaaattctctatttgtctccatatgatttctcctt
tattcaggagaaagcagtaggacaagagcaaacttgaatctctaactgtt
tccaccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832664_50832719
seq2: B6Ng01-071M19.b_47_103 (reverse)

seq1  TCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAGAGCTGAACAA  49
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAA  50

seq1  TGAATTC  56
       ||||||
seq2  AGAATTC  57

seq1: chr16_89074483_89075652
seq2: B6Ng01-071M19.g_67_1224

seq1  GAATTCAATCTTCAGGAATCAGATATATCATGGCTACTTTCTGCTGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTCAGGAATCAGATATATCATGGCTACTTTCTGCTGAACA  50

seq1  AATATATCTCAGGCCAATAAAGGCATTAGCAATGAAGAAAGAACTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTCAGGCCAATAAAGGCATTAGCAATGAAGAAAGAACTTATCA  100

seq1  TTTTGTCAGGAAAATCTGTAAAACCATGCTATTAAAAACAAGAATGAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAGGAAAATCTGTAAAACCATGCTATTAAAAACAAGAATGAACG  150

seq1  AATAAAGAATCTATGAAATTTAAATAAGCAATCTTCCAAAGTGGTACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAATCTATGAAATTTAAATAAGCAATCTTCCAAAGTGGTACACT  200

seq1  TAATTCTTCAAGTAATCTTGTAACTCATAAGACCTTCAGAGAGATCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCAAGTAATCTTGTAACTCATAAGACCTTCAGAGAGATCTAGT  250

seq1  TGATTAGCCGTATAATATAACCTATGGCTAAAAATAAAGAGAAAATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGCCGTATAATATAACCTATGGCTAAAAATAAAGAGAAAATTCAG  300

seq1  AAATGTTCCCCACTGCCTGCTTTGATAGTAAAGATAATCCTACTAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCCCCACTGCCTGCTTTGATAGTAAAGATAATCCTACTAACTAT  350

seq1  ACTTGTGAATTATGTAATGCAGCACTAAAGAAATTCATCAATTTCCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAATTATGTAATGCAGCACTAAAGAAATTCATCAATTTCCACAT  400

seq1  TACCCATCTGCACACTCATCCTAAGAGAAGCAGTGTTTTTATCCCCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATCTGCACACTCATCCTAAGAGAAGCAGTGTTTTTATCCCCAATA  450

seq1  TCCTACTACTGTGCTTTATCACTAAACTCTACTACCCTACAAAGTGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTACTGTGCTTTATCACTAAACTCTACTACCCTACAAAGTGGACA  500

seq1  TTAAATCGTGACCAACAGCCATTGCAACAGAAGTAGAAATGGCGTAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCGTGACCAACAGCCATTGCAACAGAAGTAGAAATGGCGTAACAC  550

seq1  ATACCCACTCTTCTTTACACTTTCAATATACTTTACAATCAAGAATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACTCTTCTTTACACTTTCAATATACTTTACAATCAAGAATTTGT  600

seq1  AGGAATCAGGATTGAGCCTGATTTCCTTTTGTTTATATTTATCTGTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGGATTGAGCCTGATTTCCTTTTGTTTATATTTATCTGTCTGT  650

seq1  GGTGAGTGGTGTTAGAAAAATATCCCAGACATGCTGTAAAACCTTACGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGTGTTAGAAAAATATCCCAGACATGCTGTAAAACCTTACGAC  700

seq1  TTCTAAAAAATCATGATTCCTCTAGACTTTTGCAGCAGCTATCCTTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAAATCATGATTCCTCTAGACTTTTGCAGCAGCTATCCTTGTGT  750

seq1  TTAGCCTGTTCTGCCGGTGAGTCTTTTATGAGCATCTCTCGTTAGTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTGTTCTGCCGGTGAGTCTTTTATGAGCATCTCTCGTTAGTCCAC  800

seq1  GATGAACACATAAGCCAAAGGCAGAGATGTTCTAAGCAATTCCTTCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACACATAAGCCAAAGGCAGAGATGTTCTAAGCAATTCCTTCCTGG  850

seq1  AAAATGCTCTAGAAAGGGTAGACTCTGTGCTGAGCTGTTAGATACGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTCTAGAAAGGGTAGACTCTGTGCTGAGCTGTTAGATACGTGAC  900

seq1  CCCACTCAGCTTTATTCAGTTAAGCAGATATCTCATTCCCCATTTTAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCAGCTTTATTCAGTTAAGCAGATATCTCATTCCCCATTTTAACA  950

seq1  CAAAATCTGTGTGTGAATGGCACCAGTAAATAATGTCTCATATGTTAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTGTGTGTGAATGGCACCAGTAAATAATGTCTCATATGTTAAAT  1000

seq1  TGATTAAATTAACATTTATCACTTATCCTGTACTCCCCTTAATAATGGTC  1050
      |||||||||| ||||||||||||||||||||||||||  |||| ||||||
seq2  TGATTAAATT-ACATTTATCACTTATCCTGTACTCCC--TAAT-ATGGTC  1046

seq1  TACAATACCCATAAG-TGAGAAATTCTCCTATTTGTCTCCATATGATTTC  1099
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TACAATACCCATAAGTTGAGAAATTCT-CTATTTGTCTCCATATGATTTC  1095

seq1  TCTTTTATTTCCAGGAGAAGGCCAAGTAGGACAAGAGCCAAACCTTGATA  1149
      || ||||||  |||||||| ||  ||||||||||||||  || |||||  
seq2  TCCTTTATT--CAGGAGAAAGC--AGTAGGACAAGAGC--AAACTTGAAT  1139

seq1  CTCATAACTGTTTTCCACCGG  1170
      ||| |||||| ||||||||||
seq2  CTC-TAACTG-TTTCCACCGG  1158