BAC Information

Click to search

BAC

Clone NameB6Ng01-071P11
Chromosome16 (Build37)
Map Location 30,090,965 - 30,232,534
singlet/doubletdoublet
Overlap geneEG547263, 1700025H01Rik
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1
Downstream geneLOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071P11.bB6Ng01-071P11.g
ACCDH889517DH889518
length6141,116
definitionDH889517|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P11, 5' end.DH889518|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,090,965 - 30,091,578)(30,231,413 - 30,232,534)
sequence
gaattcataatgaatgctacgataagaatgtatttttttaaaaaagtatg
cagtaaatccccttttctgagtctgtgtgaagtttctttattggaccttt
gacaaaaaagattttggggtctccaaactgtggaaaacccatcctcgaat
attacagtttggaatctgactgtagtagtctgaacctataatcctagcta
ctcaggcagctgaggcaggaaaatcacttgaggtgaggaattccagacca
acctaggctacagagccaggccaacttctcaaaaatgaagaaataaaata
ataataaaatgaagaaaggccatacctttttattgtttcctagggttcag
aatatcacccacctaaggacatgtctttcccctcatgactgcatagatag
gtaggtcccatgctaggtgtggcagtgcacacctttaatcctggcactaa
ggaggcagaagcagggggatctctgtgaatgtgaggtcagcctggtctac
ggggtaggttccaagacagcttgagctatgtaagtaagaccttctcagag
agagagagggagagagagagagagagagagagagagagagagagagagga
aggaaggaaggaag
gaattccaacccaataaaataatttggatcatggttggaaccttatggta
aagcaagctgacggcacagctggaaaaccgaaatcttgcatcttggaaac
tctgttcagccaggtccaaagggttgcgtcgcttgctcttctgggagggt
cagacaagtgtctctgtaactttgttgccctgaaagtctctgtgaagggc
agaccagacccccacccccacccccacccccgtggcagggagccctgcct
cagtgcctaaccctattaactgttggcttcccagttgccggcttgagcca
aaaacacgctctgctgtttgaagtgcttattggaaaagcagacctcatct
tggcggcggctctgagcagttccttgtgtggggtgctccccagggctgta
atgaacacaagaaagcattccctacgtttggcatgtttgcttttatctcc
aagtcacatttaaaaatttatatttcaagaaagtcagggaaaggggccag
gacggctcaggcagcccctagtaccagaacacccagcacatcgcctccag
agaccaaggcttctgaggattagtggggaattagaaccataccagtgtgg
cagggcctccagccgggcttcctgggacttgtacagccaagcctgcagcg
gctttggagacagcgcagcagcagtgcccttggggctgcacacggggtcc
aggtgggctcaccactccactccaggagatgttggattatctctaggaca
gggaggacaagggagttcaaagcttgcctagggtctagccagccccaccc
aactgggctactggtgaacctacctcctgagacttgttttctacactgat
gactgggattgggggaaagggctttaatatttctcttctccttctgctct
tctccaggattctggaaacgtgggcctcatggtgttgattagcactgggc
tgctagtctctccctggaagctgaacttaaatagtgttcaaaagggcgcc
tttaatcccagcattgggaagcagagcagttgatgaatcttctgggttca
agctggttagttctgtgtaagtgagtttcagaacaggcagggtttgaaga
aagaccctgtctcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30090965_30091578
seq2: B6Ng01-071P11.b_45_658

seq1  GAATTCATAATGAATGCTACGATAAGAATGTATTTTTTTAAAAAAGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGAATGCTACGATAAGAATGTATTTTTTTAAAAAAGTATG  50

seq1  CAGTAAATCCCCTTTTCTGAGTCTGTGTGAAGTTTCTTTATTGGACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATCCCCTTTTCTGAGTCTGTGTGAAGTTTCTTTATTGGACCTTT  100

seq1  GACAAAAAAGATTTTGGGGTCTCCAAACTGTGGAAAACCCATCCTCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAAGATTTTGGGGTCTCCAAACTGTGGAAAACCCATCCTCGAAT  150

seq1  ATTACAGTTTGGAATCTGACTGTAGTAGTCTGAACCTATAATCCTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTTGGAATCTGACTGTAGTAGTCTGAACCTATAATCCTAGCTA  200

seq1  CTCAGGCAGCTGAGGCAGGAAAATCACTTGAGGTGAGGAATTCCAGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAGCTGAGGCAGGAAAATCACTTGAGGTGAGGAATTCCAGACCA  250

seq1  ACCTAGGCTACAGAGCCAGGCCAACTTCTCAAAAATGAAGAAATAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCTACAGAGCCAGGCCAACTTCTCAAAAATGAAGAAATAAAATA  300

seq1  ATAATAAAATGAAGAAAGGCCATACCTTTTTATTGTTTCCTAGGGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATGAAGAAAGGCCATACCTTTTTATTGTTTCCTAGGGTTCAG  350

seq1  AATATCACCCACCTAAGGACATGTCTTTCCCCTCATGACTGCATAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACCCACCTAAGGACATGTCTTTCCCCTCATGACTGCATAGATAG  400

seq1  GTAGGTCCCATGCTAGGTGTGGCAGTGCACACCTTTAATCCTGGCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCCATGCTAGGTGTGGCAGTGCACACCTTTAATCCTGGCACTAA  450

seq1  GGAGGCAGAAGCAGGGGGATCTCTGTGAATGTGAGGTCAGCCTGGTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAAGCAGGGGGATCTCTGTGAATGTGAGGTCAGCCTGGTCTAC  500

seq1  GGGGTAGGTTCCAAGACAGCTTGAGCTATGTAAGTAAGACCTTCTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGGTTCCAAGACAGCTTGAGCTATGTAAGTAAGACCTTCTCAGAG  550

seq1  AGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGA  600

seq1  AGGAAGGAAGGAAG  614
      ||||||||||||||
seq2  AGGAAGGAAGGAAG  614

seq1: chr16_30231413_30232534
seq2: B6Ng01-071P11.g_67_1182 (reverse)

seq1  TTTGAGACAGGGTCTTTCTTCAAAACCCTGCCTGTCCTGAAACTCAC-TA  49
      ||||||||||||||||||||| ||||||||||||| ||||||||||| ||
seq2  TTTGAGACAGGGTCTTTCTTC-AAACCCTGCCTGTTCTGAAACTCACTTA  49

seq1  CACAGACTAAACCAGCCTTGAACTCAG-AGATTCATCCACCTGCCTCTGC  98
      ||||||   |||||| ||||||| ||| |||||||| || ||| ||||||
seq2  CACAGAACTAACCAG-CTTGAACCCAGAAGATTCAT-CAACTG-CTCTGC  96

seq1  CTCCCAATGCTGGGATTAAAGGCGCCCTTTGGAACACTATTTAAGTTCAG  148
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCCAATGCTGGGATTAAAGGCGCCCTTTTGAACACTATTTAAGTTCAG  146

seq1  CCTTCCAGGGAGAGGACCTAGCAGCCCAGTGCTAATCAACACCATGAGGC  198
       |||||||||||||   |||||||||||||||||||||||||||||||||
seq2  -CTTCCAGGGAGAG--ACTAGCAGCCCAGTGCTAATCAACACCATGAGGC  193

seq1  CCACCGTTTCCAGAATCCTGGAGAAGAGCAGAAGGAGAAGAGAAATATTA  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCA-CGTTTCCAGAATCCTGGAGAAGAGCAGAAGGAGAAGAGAAATATTA  242

seq1  AAGCCCTTTCCCCCAATCCCAGTCATCAGTGTAGAAAACAAGTCTCAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTTCCCCCAATCCCAGTCATCAGTGTAGAAAACAAGTCTCAGGA  292

seq1  GGTAGGTTCACCAGTAGCCCAGTTGGGTGGGGCTGGCTAGACCCTAGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTCACCAGTAGCCCAGTTGGGTGGGGCTGGCTAGACCCTAGGCA  342

seq1  AGCTTTGAACTCCCTTGTCCTCCCTGTCCTAGAGATAATCCAACATCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAACTCCCTTGTCCTCCCTGTCCTAGAGATAATCCAACATCTCC  392

seq1  TGGAGTGGAGTGGTGAGCCCACCTGGACCCCGTGTGCAGCCCCAAGGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGGAGTGGTGAGCCCACCTGGACCCCGTGTGCAGCCCCAAGGGCA  442

seq1  CTGCTGCTGCGCTGTCTCCAAAGCCGCTGCAGGCTTGGCTGTACAAGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCGCTGTCTCCAAAGCCGCTGCAGGCTTGGCTGTACAAGTCC  492

seq1  CAGGAAGCCCGGCTGGAGGCCCTGCCACACTGGTATGGTTCTAATTCCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCCCGGCTGGAGGCCCTGCCACACTGGTATGGTTCTAATTCCCC  542

seq1  ACTAATCCTCAGAAGCCTTGGTCTCTGGAGGCGATGTGCTGGGTGTTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCTCAGAAGCCTTGGTCTCTGGAGGCGATGTGCTGGGTGTTCTG  592

seq1  GTACTAGGGGCTGCCTGAGCCGTCCTGGCCCCTTTCCCTGACTTTCTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGGGGCTGCCTGAGCCGTCCTGGCCCCTTTCCCTGACTTTCTTGA  642

seq1  AATATAAATTTTTAAATGTGACTTGGAGATAAAAGCAAACATGCCAAACG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATTTTTAAATGTGACTTGGAGATAAAAGCAAACATGCCAAACG  692

seq1  TAGGGAATGCTTTCTTGTGTTCATTACAGCCCTGGGGAGCACCCCACACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAATGCTTTCTTGTGTTCATTACAGCCCTGGGGAGCACCCCACACA  742

seq1  AGGAACTGCTCAGAGCCGCCGCCAAGATGAGGTCTGCTTTTCCAATAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGCTCAGAGCCGCCGCCAAGATGAGGTCTGCTTTTCCAATAAGC  792

seq1  ACTTCAAACAGCAGAGCGTGTTTTTGGCTCAAGCCGGCAACTGGGAAGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACAGCAGAGCGTGTTTTTGGCTCAAGCCGGCAACTGGGAAGCC  842

seq1  AACAGTTAATAGGGTTAGGCACTGAGGCAGGGCTCCCTGCCACGGGGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTAATAGGGTTAGGCACTGAGGCAGGGCTCCCTGCCACGGGGGTG  892

seq1  GGGGTGGGGGTGGGGGTCTGGTCTGCCCTTCACAGAGACTTTCAGGGCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGGTGGGGGTCTGGTCTGCCCTTCACAGAGACTTTCAGGGCAA  942

seq1  CAAAGTTACAGAGACACTTGTCTGACCCTCCCAGAAGAGCAAGCGACGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTACAGAGACACTTGTCTGACCCTCCCAGAAGAGCAAGCGACGCA  992

seq1  ACCCTTTGGACCTGGCTGAACAGAGTTTCCAAGATGCAAGATTTCGGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGGACCTGGCTGAACAGAGTTTCCAAGATGCAAGATTTCGGTTT  1042

seq1  TCCAGCTGTGCCGTCAGCTTGCTTTACCATAAGGTTCCAACCATGATCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGTGCCGTCAGCTTGCTTTACCATAAGGTTCCAACCATGATCCA  1092

seq1  AATTATTTTATTGGGTTGGAATTC  1122
      ||||||||||||||||||||||||
seq2  AATTATTTTATTGGGTTGGAATTC  1116