BAC Information

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BAC

Clone NameB6Ng01-072O17
Chromosome16 (Build37)
Map Location 28,206,180 - 28,342,732
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O17.bB6Ng01-072O17.g
ACCDH890198DH890199
length9821,048
definitionDH890198|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O17, 5' end.DH890199|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,341,757 - 28,342,732)(28,206,180 - 28,207,228)
sequence
gaattccatcttgtagagcatgccggagatctaggcagaaagcagttgtt
atggcacaacagttgtgccgctattgcacctatgagcatatttggcttag
caggtgagatttgcagcatacgaggatgagttcttagtgagaccattgat
gtattttctcccctaacagcctgcagggcatcttccagtacctcaaaagc
tggaaagcagagaggaagtttttttgttattttgagtttggcttttctgt
gtcttcccactgaagttacttctcccctcaggacctggctttcctttttt
ttttcttccttccttctttcctttccttccctccttctttccttctttcc
ttccttccttcctttcttccttccttctttcctccctccttctttcctcc
ctccttctttcactctctctctccctccttcttacctccctctctctctc
tctctctttctttccctctgtcttcctttcttccctctttctttctttct
ttctttctttctttctttctttctttctttctttcttccctctttctttt
ttctttctttcttttattcattttaaatttttaattgaaatgcaatcaca
taatcttttccctttctctttccccttccagctctctcctctttgttccc
tctctttaatccctccatccttcctaattccttctcaaattcagtcccct
tttctctgattattgtttgttttgtgcttacacacacacacatacacaca
cacataccacttatgggatattattctttttctccatagtatttattgta
aatttgggaatcttgtattttttgcttaatgcaattttcgggatttgtaa
tgtttctttgcacttgtgcactcattgccttttatatgatacctgacata
cccaataaatttcacctactaggtgggagtgatttaaatatgttgggccc
gggcactttcatgaggggtgacccttgttgga
gaattctaaaactcaaagctgaaggaggaagatgctaagtctataggtgg
tggttctgatgttctgatgctctgatcaggaacctgcatgtgaacactga
aggttctgtcccacaaatgattcttgatcaatcaataaagatgctagcag
ccaatggctaggtggaagaggtgagacttccaggttttcgcaggcagatt
aagagacacagggagaagaaaaaggttcagcctgcttctgagggagaaag
agccaccagctatataagatctcgggtggagtggccattggcaactcagt
tgagggaaaatttagaggtgttgatctaggaacgaaaagaagggcatgaa
agcagtggaaggcttagaagtagccaaccattgagctaaaaacatattaa
aaataagctaacatgtttgtgtctttcttccatggaaggtcagggctgat
agtgtgatctgcccagagttctgcagggtagtagaaactacatgctacaa
gaatccatcaccatggggaagaattataacaccaagcaactcagttcttc
aaccacaaagacccccccccccccagagaaatatttctctcagcaaggag
ccattcctcctaaacctacccaaactgggccaacagctggggaccgagta
gtcctatgcctgagaacatggggccacatcattgagaccatcacaagtat
gtcctatcattgagaggacccagctctagcagttggcatgcttactcaat
aggtctaaacagtttcctccaagtatctgcaatgccaggtgagtgactgt
agtgaggaaaagattcaaggagttgctgctactgctgctgctgctgctga
cagccagagaaacatggtttggggattgtgttgtgggcacagagcacttg
agatgtaggatggctaaaaattgccgctatcaagtacgacagacatcaca
aatttcttttttgtttgttgttgtttgttggtgttggtgttgtggtttga
ccatttgaagaagaatataattaataaaaataaagcaaaacaaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_28341757_28342732
seq2: B6Ng01-072O17.b_50_1031 (reverse)

seq1  TCCAACAA-GGTCACACCTCCTGAAAGTGCCCTGGGCCAAGCATATTTAA  49
      |||||||| |||||| |||| ||||||||||| ||||| | |||||||||
seq2  TCCAACAAGGGTCACCCCTCATGAAAGTGCCC-GGGCCCAACATATTTAA  49

seq1  ATCACT-CCACCTAGTAGGTGAAATTTATTGGGTAATGTCAGGTATCATA  98
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCACTCCCACCTAGTAGGTGAAATTTATTGGGT-ATGTCAGGTATCATA  98

seq1  TAAAAGGCAATGAGTGCAC-AGTGGCAAGAAACATTACAAATCCCGAAAA  147
      ||||||||||||||||||| ||||  ||||||||||||||||||||||||
seq2  TAAAAGGCAATGAGTGCACAAGTGCAAAGAAACATTACAAATCCCGAAAA  148

seq1  -TGCATTAAGCAAAATATACAAGATTCACAAA-TTACAAT-AATACTATG  194
       |||||||||||||| ||||||||||| |||| ||||||| |||||||||
seq2  TTGCATTAAGCAAAAAATACAAGATTCCCAAATTTACAATAAATACTATG  198

seq1  GAGAAAAAGAATAATATACCATAAGTGGTATGTGTGTGTGTATGTGTGTG  244
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGAATAATATCCCATAAGTGGTATGTGTGTGTGTATGTGTGTG  248

seq1  TGTGTAAGCACAAAAC-AACAATAATCAGAGAAAAGGGGACTGAATTTGA  293
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGTAAGCACAAAACAAACAATAATCAGAGAAAAGGGGACTGAATTTGA  298

seq1  GAAGGAATTAGGAAGGATGGAGGGATTAAAGAGAGGGAAC-AAGAGGAGA  342
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAGGAATTAGGAAGGATGGAGGGATTAAAGAGAGGGAACAAAGAGGAGA  348

seq1  GAGCTGGAAGGGGAAAGAGAAAGGGAAAAGATTATGTGATTGCATTTCAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAAGGGGAAAGAGAAAGGGAAAAGATTATGTGATTGCATTTCAA  398

seq1  TTAAAAATTTAAAATGAATAAAAGAAAGAAAGAAAAAAGAAAGAGGGAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTTAAAATGAATAAAAGAAAGAAAGAAAAAAGAAAGAGGGAAG  448

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  498

seq1  GGAAGAAAGGAAGACAGAGGGAAAGAAAGAGAGAGAGAGAGAGAGGGAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGGAAGACAGAGGGAAAGAAAGAGAGAGAGAGAGAGAGGGAGG  548

seq1  GAAGAAGGAGGGAGAGAGAGAGTGAAAGAAGGAGGGAGGAAAGAAGGAGG  592
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGAGGGAGAGAGAGAGTGAAAGAAGGAGGGAGGAAAGAAGGAGG  598

seq1  GAGGAAAGAAGGAAGGAAGAAAGGAAGGAAGGAAGGAAAGAAGGAAAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGAAGGAAGGAAGAAAGGAAGGAAGGAAGGAAAGAAGGAAAGAA  648

seq1  GGAGGGAAGGAAAGGAAAGAAGGAAGGAAGAAAAAAAAAAGGAAAGCCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGGAAAGGAAAGAAGGAAGGAAGAAAAAAAAAAGGAAAGCCAG  698

seq1  GTCCTGAGGGGAGAAGTAACTTCAGTGGGAAGACACAGAAAAGCCAAACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGGGGAGAAGTAACTTCAGTGGGAAGACACAGAAAAGCCAAACT  748

seq1  CAAAATAACAAAAAAACTTCCTCTCTGCTTTCCAGCTTTTGAGGTACTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACAAAAAAACTTCCTCTCTGCTTTCCAGCTTTTGAGGTACTGG  798

seq1  AAGATGCCCTGCAGGCTGTTAGGGGAGAAAATACATCAATGGTCTCACTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCCTGCAGGCTGTTAGGGGAGAAAATACATCAATGGTCTCACTA  848

seq1  AGAACTCATCCTCGTATGCTGCAAATCTCACCTGCTAAGCCAAATATGCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCATCCTCGTATGCTGCAAATCTCACCTGCTAAGCCAAATATGCT  898

seq1  CATAGGTGCAATAGCGGCACAACTGTTGTGCCATAACAACTGCTTTCTGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGCAATAGCGGCACAACTGTTGTGCCATAACAACTGCTTTCTGC  948

seq1  CTAGATCTCCGGCATGCTCTACAAGATGGAATTC  976
      ||||||||||||||||||||||||||||||||||
seq2  CTAGATCTCCGGCATGCTCTACAAGATGGAATTC  982

seq1: chr16_28206180_28207228
seq2: B6Ng01-072O17.g_67_1114

seq1  GAATTCTAAAACTCAAAGCTGAAGGAGGAAGATGCTAAGTCTATAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAACTCAAAGCTGAAGGAGGAAGATGCTAAGTCTATAGGTGG  50

seq1  TGGTTCTGATGTTCTGATGCTCTGATCAGGAACCTGCATGTGAACACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGATGTTCTGATGCTCTGATCAGGAACCTGCATGTGAACACTGA  100

seq1  AGGTTCTGTCCCACAAATGATTCTTGATCAATCAATAAAGATGCTAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGTCCCACAAATGATTCTTGATCAATCAATAAAGATGCTAGCAG  150

seq1  CCAATGGCTAGGTGGAAGAGGTGAGACTTCCAGGTTTTCGCAGGCAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGCTAGGTGGAAGAGGTGAGACTTCCAGGTTTTCGCAGGCAGATT  200

seq1  AAGAGACACAGGGAGAAGAAAAAGGTTCAGCCTGCTTCTGAGGGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACAGGGAGAAGAAAAAGGTTCAGCCTGCTTCTGAGGGAGAAAG  250

seq1  AGCCACCAGCTATATAAGATCTCGGGTGGAGTGGCCATTGGCAACTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAGCTATATAAGATCTCGGGTGGAGTGGCCATTGGCAACTCAGT  300

seq1  TGAGGGAAAATTTAGAGGTGTTGATCTAGGAACGAAAAGAAGGGCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAAATTTAGAGGTGTTGATCTAGGAACGAAAAGAAGGGCATGAA  350

seq1  AGCAGTGGAAGGCTTAGAAGTAGCCAACCATTGAGCTAAAAACATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGAAGGCTTAGAAGTAGCCAACCATTGAGCTAAAAACATATTAA  400

seq1  AAATAAGCTAACATGTTTGTGTCTTTCTTCCATGGAAGGTCAGGGCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTAACATGTTTGTGTCTTTCTTCCATGGAAGGTCAGGGCTGAT  450

seq1  AGTGTGATCTGCCCAGAGTTCTGCAGGGTAGTAGAAACTACATGCTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATCTGCCCAGAGTTCTGCAGGGTAGTAGAAACTACATGCTACAA  500

seq1  GAATCCATCACCATGGGGAAGAATTATAACACCAAGCAACTCAGTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATCACCATGGGGAAGAATTATAACACCAAGCAACTCAGTTCTTC  550

seq1  AACCACAAAGACCCCCCCCCCCCCAGAGAAATATTTCTCTCAGCAAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAAGACCCCCCCCCCCCCAGAGAAATATTTCTCTCAGCAAGGAG  600

seq1  CCATTCCTCCTAAACCTACCCAAACTGGGCCAACAGCTGGGGACCGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTCCTAAACCTACCCAAACTGGGCCAACAGCTGGGGACCGAGTA  650

seq1  GTCCTATGCCTGAGAACATGGGGCCACATCATTGAGACCATCACAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATGCCTGAGAACATGGGGCCACATCATTGAGACCATCACAAGTAT  700

seq1  GTCCTATCATTGAGAGGACCCAGCTCTAGCAGTTGGCATGCTTACTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATCATTGAGAGGACCCAGCTCTAGCAGTTGGCATGCTTACTCAAT  750

seq1  AGGTCTAAACAGTTTCCTCCAAGTATCTGCAATGCCAGGTGAGTGACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAAACAGTTTCCTCCAAGTATCTGCAATGCCAGGTGAGTGACTGT  800

seq1  AGTGAGGAAAGGATTCAAGGAGTTGCTGCTACTGCTGCTGCTGCTGCTGA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAAAAGATTCAAGGAGTTGCTGCTACTGCTGCTGCTGCTGCTGA  850

seq1  CAGCCAGAGAAACATGGTT--GGGA-TGTGTTGT-GGCACAGAGCACTTG  896
      |||||||||||||||||||  |||| |||||||| |||||||||||||||
seq2  CAGCCAGAGAAACATGGTTTGGGGATTGTGTTGTGGGCACAGAGCACTTG  900

seq1  AGATGTAGGATGGCTAAAAA-TGCCGCTATCAAGTACGACAGACATCACA  945
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATGTAGGATGGCTAAAAATTGCCGCTATCAAGTACGACAGACATCACA  950

seq1  AATTTCTTTTTTGTTTGTTTGTTTGTTTGTTTGTTGTTGTTGTTGTTGT-  994
      |||||||||||||||||||       |||||||||| ||||| |||||| 
seq2  AATTTCTTTTTTGTTTGTT------GTTGTTTGTTGGTGTTGGTGTTGTG  994

seq1  -TTTGATCATTTGAAGGAAGAGTAAGATTATTAAAAATAAAGCAAAACAA  1043
       ||||| |||||||| ||||| ||  |||| ||||||||||||||||| |
seq2  GTTTGACCATTTGAA-GAAGAATATAATTAATAAAAATAAAGCAAAAC-A  1042

seq1  AGGAAT  1049
      ||||||
seq2  AGGAAT  1048