BAC Information

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BAC

Clone NameB6Ng01-072P13
Chromosome16 (Build37)
Map Location 28,265,546 - 28,266,745
singlet/doubletsinglet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P13.bB6Ng01-072P13.g
ACCDH890238DH890239
length1,1861,234
definitionDH890238|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P13, 5' end.DH890239|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttctcaattattaaaagtatcacacaaatatgcatgtacaga
tgcatacaacaggcaagacaaaaagaatacaacagttttaaagacaaaaa
ggtatgtcaggaaatagcatgccagaaatgaaggtatgtatattaaccct
ttggtgtatttcttattactttcatatcattaagaccttagaaatgcctg
actttttgactacatcaaaaaatcatctttaaagaagtaaacatatataa
ccagacccccaagactctcacattgtaatgtataaaacccccaaaacaaa
ttttaaaatatctagatgttaaaaatgagaatatattatataagaaccta
tgcagctgaatcagtgttcagaggaatcaccacattatatattctcaaag
acgaacaaagaaactggaaaaacgtgagaaccatccatcttcaagaatta
caagattaacaaattttaggaaagtagaaggaagattgttgagatgatta
aaacaaattgctgaattattaaaaaatatggtagaattagcaagtaaata
taaaaacaggttctttgagagataaaataacggagtatgcctttgctttc
ctggatgcctgcagcactccaaagaggcagctgtttgttgtgggtaccac
tctccattgagttgagcataatacctgtctctctacctaccagatgtcag
tagttctcccctgactaattgtaacaatgcaaatgtttgtcaattcatcc
gttttcttggggaattgaaattgtcccagttgagaaccactgaagtaact
gatcccatgtgactagaagggttggagagatggcttggtggttagcagca
cttcctactctttcagaagaccagagtttgtttgtttctaacactcaggt
tagtggctcacaactccatctcctgaagatccgacaccctcctatagact
ctgaaagcacctgcatgcacatcctgggcccctcctccgacacgtgctct
gtttgtagataaataaactacccaataagttaccaggagagctatagtac
ttagaacacccatgcccagttcactctctgatcagaatgatgatttcatc
tcagagtgaaattcctcttccacctatgattggatcctacgttgtgccgt
gactgtggtactcttcccctatagaatgctatcctt
gaattccaattacattggctacatgtaaaagagtggcaatatttatattt
tcaaatatattagatttttggggtaccaaaatgaatagctttttttgcag
gcaaataaactagttcataaataagggatacatgaaatgcagtaccaccc
aaatctgcatgtaatttttatagatgcagaatgaatgactttcagaatca
taagaaacaacagattactgcatataaccaaaataaccttagaaaagaat
aaagttagatatgtcattctgatatcaaagtgtatgaaaatctgcagtag
ttaaaacagtatgaaaatggtgtaaagacaaatataaaattcaacagaac
acaaatccctctggtcggtgccagctcggggtcacattgggcacggagtc
ggtggacacccacaaggtccctagaggactctccacatgatcttaggacc
actggtgagtggaacacaacttctgctccattccaatcgtgcaggacctg
agacagcaatagggaagcagaaaacccaccctgaccagggtcacaaatcc
attccggtcagcgacagcaccgggtcacctgggagcggagtcggcagaca
cgcgcaaggtccttagaggactcttcacgcgaatttaggacctctggaga
gtggaacaaaacttctgttccaatccaattgcacatgacctgagacagca
ttagggaagcagaaaacccggcctgaccagggtcacaagtcccttccagt
cggctccagcaccgggtcaccttgggcacggagttggcagacacccccaa
ggtccctagaggacagcttctgaggcagaccccttttcgggttccagaca
tctgggcaccttccctgccagagaagaggtgtccaccctgcccaggaggg
ctttgtggcacttggggaagccacattggttcccggatccctccagacta
gtctgctcagtgagattgtgacaacagaagctaacagcttctgggacagc
cctgttttggccttcttcttctgccaggaaaagtctgactccagatatct
ggtgcaccttccctgcagagtagagctgcctgcagaagtgctcctgacac
ctgaaacctcaggagagagctatgcttccagttgtgctgataagcttacg
atctggaagagcaagcctctaacagaacacttaacctcatcggaatacac
tgtaggaaccagatcttctacgaagcagagacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_28265546_28266745
seq2: B6Ng01-072P13.b_45_1230

seq1  GAATTCACTTCTCAATTATTAAAAGTATCACACAAATATGCATGTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCAATTATTAAAAGTATCACACAAATATGCATGTACAGA  50

seq1  TGCATACAACAGGCAAGACAAAAAGAATACAACAGTTTTAAAGACAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAACAGGCAAGACAAAAAGAATACAACAGTTTTAAAGACAAAAA  100

seq1  GGTATGTCAGGAAATAGCATGCCAGAAATGAAGGTATGTATATTAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTCAGGAAATAGCATGCCAGAAATGAAGGTATGTATATTAACCCT  150

seq1  TTGGTGTATTTCTTATTACTTTCATATCATTAAGACCTTAGAAATGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTATTTCTTATTACTTTCATATCATTAAGACCTTAGAAATGCCTG  200

seq1  ACTTTTTGACTACATCAAAAAATCATCTTTAAAGAAGTAAACATATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGACTACATCAAAAAATCATCTTTAAAGAAGTAAACATATATAA  250

seq1  CCAGACCCCCAAGACTCTCACATTGTAATGTATAAAACCCCCAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCCCAAGACTCTCACATTGTAATGTATAAAACCCCCAAAACAAA  300

seq1  TTTTAAAATATCTAGATGTTAAAAATGAGAATATATTATATAAGAACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATATCTAGATGTTAAAAATGAGAATATATTATATAAGAACCTA  350

seq1  TGCAGCTGAATCAGTGTTCAGAGGAATCACCACATTATATATTCTCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGAATCAGTGTTCAGAGGAATCACCACATTATATATTCTCAAAG  400

seq1  ACGAACAAAGAAACTGGAAAAACGTGAGAACCATCCATCTTCAAGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACAAAGAAACTGGAAAAACGTGAGAACCATCCATCTTCAAGAATTA  450

seq1  CAAGATTAACAAATTTTAGGAAAGTAGAAGGAAGATTGTTGAGATGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTAACAAATTTTAGGAAAGTAGAAGGAAGATTGTTGAGATGATTA  500

seq1  AAACAAATTGCTGAATTATTAAAAAATATGGTAGAATTAGCAAGTAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTGCTGAATTATTAAAAAATATGGTAGAATTAGCAAGTAAATA  550

seq1  TAAAAACAGGTTCTTTGAGAGATAAAATAACGGAGTATGCCTTTGCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGGTTCTTTGAGAGATAAAATAACGGAGTATGCCTTTGCTTTC  600

seq1  CTGGATGCCTGCAGCACTCCAAAGAGGCAGCTGTTTGTTGTGGGTACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCCTGCAGCACTCCAAAGAGGCAGCTGTTTGTTGTGGGTACCAC  650

seq1  TCTCCATTGAGTTGAGCATAATACCTGTCTCTCTACCTACCAGATGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTGAGTTGAGCATAATACCTGTCTCTCTACCTACCAGATGTCAG  700

seq1  TAGTTCTCCCCTGACTAATTGTAACAATGCAAATGTTTGTCAATTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCCCCTGACTAATTGTAACAATGCAAATGTTTGTCAATTCATCC  750

seq1  GTTTTCTTGGGGAATTGAAATTGTCCCAGTTGAGAACCACTGAAGTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTGGGGAATTGAAATTGTCCCAGTTGAGAACCACTGAAGTAACT  800

seq1  GATCCCATGTGACTAGAAGGGTTGGAGAGATGGCTTGGTGGTTAGCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCATGTGACTAGAAGGGTTGGAGAGATGGCTTGGTGGTTAGCAGCA  850

seq1  CTTCCTACTCTTTCAGAAGACCAGAGTTTGTTTGTTTCTAACACTCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTCTTTCAGAAGACCAGAGTTTGTTTGTTTCTAACACTCAGGT  900

seq1  TAGGTGGCTCACAACTCCATCTCCTGAAGATCCGACACCCTCCTATAGAC  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-GTGGCTCACAACTCCATCTCCTGAAGATCCGACACCCTCCTATAGAC  949

seq1  TCTGAAGGCACCTGCATGCACATCCT-GGCCCCTCCTCCGACACGTGCTC  999
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTGAAAGCACCTGCATGCACATCCTGGGCCCCTCCTCCGACACGTGCTC  999

seq1  TGTATGTAGATAAATAAACTACACAAATAAAGTTACCAGGAGAGCTATAG  1049
      ||| |||||||||||||||||| |||   |||||||||||||||||||||
seq2  TGTTTGTAGATAAATAAACTACCCAA--TAAGTTACCAGGAGAGCTATAG  1047

seq1  TACTTAGAACACCCATGCCCAAGTTCACTCTCTGGATCAGAATGATGATT  1099
      |||||||||||||||||||| |||||||||||| |||||||||||||| |
seq2  TACTTAGAACACCCATGCCC-AGTTCACTCTCT-GATCAGAATGATGA-T  1094

seq1  TTCATCATACAGAGTGAAATT-CTCTTCCAGCTAATGATTTGAATTCCTA  1148
      ||||||   |||||||||||| |||||||| || |||||| ||  |||||
seq2  TTCATC--TCAGAGTGAAATTCCTCTTCCACCT-ATGATTGGA--TCCTA  1139

seq1  GGTTGTGCCGTGACTGTGGTACTCTTTCCCCCTAATTAAGAATGCTATCC  1198
       |||||||||||||||||||||||||  ||||||    ||||||||||||
seq2  CGTTGTGCCGTGACTGTGGTACTCTT--CCCCTA---TAGAATGCTATCC  1184

seq1  TT  1200
      ||
seq2  TT  1186