BAC Information

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BAC

Clone NameB6Ng01-073A24
Chromosome16 (Build37)
Map Location 10,351,502 - 10,519,831
singlet/doubletdoublet
Overlap geneTekt5, Nubp1, BC068110, Ciita, LOC669998
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2
Downstream geneDexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073A24.bB6Ng01-073A24.g
ACCDH890301DH890302
length1,0381,112
definitionDH890301|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A24, 5' end.DH890302|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,519,223 - 10,519,831)(10,351,502 - 10,352,616)
sequence
gaattcctagaaagactctgtgtcgcagagactgattgaaagattgtgga
gaggtcgggagaggcccaagaacagccagtccttacccacctctgtgtca
gaagtgtggctggtggataaaacctcttgggctctattaacttagctgac
cactagcttccaccaatccaaaagctaagactgccctcagatgacatctt
gggcctgtagaaaagctccccctacttggtgtacctgcttctctcgggtt
cctaccaatatattttttgttttgttttgtttcttgtttttcgagacagg
gtttctctgtgtagccctggctgtcctgaaactctgtaggccaggctgtt
ctcgaactcacagagatccgcctgcctctggctcccaagtgctggcatta
aagacatgcaccacaactgtctggccatgccaatgtattttatatggcta
tctttgttctttaaaactataaaacttcatggaattgcctccatgttgga
acatggagtctgagattacctagatctgtgtttctgagccacggtcactc
aagatggctcccaaataaactcttaaccgctttaggaggagagcaatgtt
tctgcattgacatgcttttacatgagttctggagaccaaactcttatctc
ccggcatgtgcagcaagagcctttaccctctaaggcatcttattggcccc
ttttacatcttttgttctgaaacaaaggtgtcatgtagcccaggctagtc
ttgaactcaaagatcctccagccccagtctctccagcgctggggatcacg
ggtgtatcatgtccatctcccacacacccttctacctttacttccaaagc
ataaaacagctaaagacaacttctaccgctcagtgtttcactgcttaatc
cccaacttttcttgtctcttccaacatcccataacagttttcatgcataa
acttttattacagggaatttatttgatacattttctcttcccttttagtg
gggggttggtcagagacaaggtccggatttagttggtc
gaattccatccatgggcacgtccgaggtcacatgataccaaagaaggtgc
aaccagatcctggaagcccagcccccatcccgtatcagaccaggaatgtt
ctgtatgtcttcaggggaggaacggacagaagagtctgcagcagccccta
ggaatttcaattgtcttctgacccctccacccagcctgcaggagggggca
ctcgtctagagcactttcagatacacaggagcaaacagctgagactttgt
gtgatggtgacgcgctgacatttcagggccaggctaaatgacgtgggcat
tttactctctaagcctgtaccccaagaagctgggaagcggggaggatatt
tggagtacccaaggggagccagggccagttcatcctcactgtgtcacggt
gggcaagtgtcatcacctctctgtgcctctgttttctcaactgtaaagtg
agaaaacacccatctcatggcgtgaacgtggggttacctcactgtctgcc
ctttatcaccgttcatggctaaggcctcaagaggatggggaaacgctttc
tcaggtcagccagcggatagggctatggtgtcctgctctttcatacagcc
tgtagggttcacctttgccagtggccttgcaaacaatagctttcttttat
ttgggaagctgagtccagccattctggatttgagtatctgcgttgaaatc
ttacctctctcacttattttactgtgagtataggtgagttccttgctgtc
tctgtacttgaatctgtgtagttttgtttcttagccgcatttatctacgt
gtgtgtaccagagtacacgtgtgtggtgggcagagcacagctgctaccat
atgggtccaggtattgaactttgggtcatcagacttggcagcaagcacct
tcatccaccgaaaccagcttgccaactttttttcctgctttaccattttt
tcaatgttcactgaccctttatcagttcccgtggcactactgaagagctc
agctctttctcaagaaatccataacttcaggaagaaccaagggctcctat
ctgggaaaaatctgccgctgctttcctatcacagttcaagaggggaaaga
actggtctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10519223_10519831
seq2: B6Ng01-073A24.b_475_1077 (reverse)

seq1  ACCAAC----TCCGGAACATTGTCCTCTGACCTACACACACACTAAAAAA  46
      ||||||    ||||| || |||| |||||||| || | | ||||||||  
seq2  ACCAACTAAATCCGG-ACCTTGT-CTCTGACCAAC-CCCCCACTAAAA--  45

seq1  GAGAAAGAGAAAAAAGTATCAAAATAAAATACACTGTAATAAAAGTTTAA  96
        | ||||| |||| ||||||||   |||| | ||||||||||||||| |
seq2  -GGGAAGAG-AAAATGTATCAAA--TAAATTCCCTGTAATAAAAGTTT-A  90

seq1  TGCATGAAAACTGTTCTGGGATGTTGGAAGAGACAGGATAGGTTGGGGCT  146
      ||||||||||||||| ||||||||||||||||||| || | ||||||| |
seq2  TGCATGAAAACTGTTATGGGATGTTGGAAGAGACAAGAAAAGTTGGGGAT  140

seq1  T-AGCAGTGGAAACACTGAGCGGTGGAAGTTGTCTTTAGCTGTTTTATGC  195
      | |||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TAAGCAGT-GAAACACTGAGCGGTAGAAGTTGTCTTTAGCTGTTTTATGC  189

seq1  TTTGGGAAGTTAAGGTAGAATGGGTGTGTGGGAGATGGACATGATACACC  245
      ||| |||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TTT-GGAAGTAAAGGTAGAA-GGGTGTGTGGGAGATGGACATGATACACC  237

seq1  CGTGAT-CCCAGCGCTGGAGAGACTGGGGCTGGAGGATCTTTGAGTTCAA  294
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATCCCCAGCGCTGGAGAGACTGGGGCTGGAGGATCTTTGAGTTCAA  287

seq1  GGCTAGCCTGGGCTACATGACACC-TTGTTTCAGAACAAAAGATGTAAAA  343
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GACTAGCCTGGGCTACATGACACCTTTGTTTCAGAACAAAAGATGTAAAA  337

seq1  GGGGCCAATAAGATGCCTTAGAGGGTAAAGGCTCTTGCTGCACATGCCGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAATAAGATGCCTTAGAGGGTAAAGGCTCTTGCTGCACATGCCGG  387

seq1  GAGATAAGAGTTTGGTCTCCAGAACTCATGTAAAAGCATGTCAATGCAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGAGTTTGGTCTCCAGAACTCATGTAAAAGCATGTCAATGCAGA  437

seq1  AACATTGCTCTCCTCCTAAAGCGGTTAAGAGTTTATTTGGGAGCCATCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCTCTCCTCCTAAAGCGGTTAAGAGTTTATTTGGGAGCCATCTT  487

seq1  GAGTGACCGTGGCTCAGAAACACAGATCTAGGTAATCTCAGACTCCATGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCGTGGCTCAGAAACACAGATCTAGGTAATCTCAGACTCCATGT  537

seq1  TCCAACATGGAGGCAATTCCATGAAGTTTTATAGTTTTAAAGAACAAAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATGGAGGCAATTCCATGAAGTTTTATAGTTTTAAAGAACAAAGA  587

seq1  TAGCCATATAAAATAC  609
      ||||||||||||||||
seq2  TAGCCATATAAAATAC  603

seq1: chr16_10351502_10352616
seq2: B6Ng01-073A24.g_68_1179

seq1  GAATTCCATCCATGGGCACGTCCGAGGTCACATGATACCAAAGAAGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCATGGGCACGTCCGAGGTCACATGATACCAAAGAAGGTGC  50

seq1  AACCAGATCCTGGAAGCCCAGCCCCCATCCCGTATCAGACCAGGAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATCCTGGAAGCCCAGCCCCCATCCCGTATCAGACCAGGAATGTT  100

seq1  CTGTATGTCTTCAGGGGAGGAACGGACAGAAGAGTCTGCAGCAGCCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTCTTCAGGGGAGGAACGGACAGAAGAGTCTGCAGCAGCCCCTA  150

seq1  GGAATTTCAATTGTCTTCTGACCCCTCCACCCAGCCTGCAGGAGGGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCAATTGTCTTCTGACCCCTCCACCCAGCCTGCAGGAGGGGGCA  200

seq1  CTCGTCTAGAGCACTTTCAGATACACAGGAGCAAACAGCTGAGACTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTAGAGCACTTTCAGATACACAGGAGCAAACAGCTGAGACTTTGT  250

seq1  GTGATGGTGACGCGCTGACATTTCAGGGCCAGGCTAAATGACGTGGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGTGACGCGCTGACATTTCAGGGCCAGGCTAAATGACGTGGGCAT  300

seq1  TTTACTCTCTAAGCCTGTACCCCAAGAAGCTGGGAAGCGGGGAGGATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTCTAAGCCTGTACCCCAAGAAGCTGGGAAGCGGGGAGGATATT  350

seq1  TGGAGTACCCAAGGGGAGCCAGGGCCAGTTCATCCTCACTGTGTCACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACCCAAGGGGAGCCAGGGCCAGTTCATCCTCACTGTGTCACGGT  400

seq1  GGGCAAGTGTCATCACCTCTCTGTGCCTCTGTTTTCTCAACTGTAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTGTCATCACCTCTCTGTGCCTCTGTTTTCTCAACTGTAAAGTG  450

seq1  AGAAAACACCCATCTCATGGCGTGAACGTGGGGTTACCTCACTGTCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACCCATCTCATGGCGTGAACGTGGGGTTACCTCACTGTCTGCC  500

seq1  CTTTATCACCGTTCATGGCTAAGGCCTCAAGAGGATGGGGAAACGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCACCGTTCATGGCTAAGGCCTCAAGAGGATGGGGAAACGCTTTC  550

seq1  TCAGGTCAGCCAGCGGATAGGGCTATGGTGTCCTGCTCTTTCATACAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAGCCAGCGGATAGGGCTATGGTGTCCTGCTCTTTCATACAGCC  600

seq1  TGTAGGGTTCACCTTTGCCAGTGGCCTTGCAAACAATAGCTTTCTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTTCACCTTTGCCAGTGGCCTTGCAAACAATAGCTTTCTTTTAT  650

seq1  TTGGGAAGCTGAGTCCAGCCATTCTGGATTTGAGTATCTGCGTTGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGCTGAGTCCAGCCATTCTGGATTTGAGTATCTGCGTTGAAATC  700

seq1  TTACCTCTCTCACTTA-TTTACTGTGAGTATAGGTGAGTTCCTTGCTGTC  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTACCTCTCTCACTTATTTTACTGTGAGTATAGGTGAGTTCCTTGCTGTC  750

seq1  TCTGTACTTGAATCTGTGTAGTTTTGTTTCTTAGCCGCATTTATCTACGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTTGAATCTGTGTAGTTTTGTTTCTTAGCCGCATTTATCTACGT  800

seq1  GTGTGTACCAGAGTACACGTGTGTGGTGGTCAGAGCACAGCTGCTACCAT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGTGTACCAGAGTACACGTGTGTGGTGGGCAGAGCACAGCTGCTACCAT  850

seq1  ATGGGTCCAGGTATTGAAC-TTGGGTCATCAGACTTGGCAGCAAGCACC-  897
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  ATGGGTCCAGGTATTGAACTTTGGGTCATCAGACTTGGCAGCAAGCACCT  900

seq1  TCAACCACCGAAACCAGCTTGCCAACCTTTTTTTCCTGCTTTACCAATTT  947
      ||| ||||||||||||||||||||| ||||||||||||||||||||  ||
seq2  TCATCCACCGAAACCAGCTTGCCAA-CTTTTTTTCCTGCTTTACCA--TT  947

seq1  TTATCAATGTTCACTGACCCTTTATCAGTGCCCGTGGCACTACTG-AGAG  996
      || |||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TTTTCAATGTTCACTGACCCTTTATCAGTTCCCGTGGCACTACTGAAGAG  997

seq1  CTCAGCTCTTTCTCAAG-AATCCATAACTTCAAGAAGAA-CACAGGCTCC  1044
      ||||||||||||||||| |||||||||||||| |||||| ||  ||||||
seq2  CTCAGCTCTTTCTCAAGAAATCCATAACTTCAGGAAGAACCAAGGGCTCC  1047

seq1  TATCTGTGAAAGATCTGCCCGCTGGCTTTTCCTTATCACAGTTTAAGAGT  1094
      |||||| |||| ||||| ||||| |||||  | |||||||||| ||||| 
seq2  TATCTGGGAAAAATCTG-CCGCT-GCTTT--CCTATCACAGTTCAAGAGG  1093

seq1  GGTAAGAACTTGGTTCTCTTT  1115
      || |||||||  | |||||||
seq2  GGAAAGAACT--GGTCTCTTT  1112