BAC Information

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BAC

Clone NameB6Ng01-073E04
Chromosome16 (Build37)
Map Location 92,281,131 - 92,484,289
singlet/doubletdoublet
Overlap geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik
Upstream geneIfnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
Downstream geneClic6, Runx1, EG666023, LOC100040747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073E04.bB6Ng01-073E04.g
ACCDH890444DH890445
length912568
definitionDH890444|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E04, 5' end.DH890445|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,483,378 - 92,484,289)(92,281,131 - 92,281,704)
sequence
gaattcatgtggaaaaaactggacagcccatgcaaggcaggctctccctt
tctcataggattgggaagatgtgtgaggccattggaagacatattagtac
taggattgcttctcccggaagacagcatgaatctgtttgtctgaaataac
ttcagagcttgcacgtttaatgtgtatacaggtcttaaatgctgtgattt
ggaggtgactagattggacaaggttgttctatttattccagggctttaaa
ataaacacttagagcaaaggtttcaaggctccaaaacttgaaagtggaat
ggacatctcattgcctggttccttgaagcatcatctatgtgtatacctgt
acacacgtacataagcacttgtgagtgtgtgcatatgtggaagctagata
ttaacctccggtaacattccttaggatgctgtctgccttggtatgcttgt
ttgtttgtttactccattttgattttagacaggatctctcagtggtctgg
aactccctgactcagttagactggctgtggccagtaagctacaagggtct
ttttctttttacctccccagtgatgaaattccaagccacaccttgctttt
aaacaatgtctctataaggcaaactcagggctgtgtgtttgcatggcaag
cattcaacacctgaattatctcctctgcccacggtctgcaaagtcttgat
gaaactgaaataagcaaccatgtacgatagaaacatggcattttatagtt
ccttggaggtaacttggtagcccaatctgtttgtttgcatacactaatga
aagacctgcttcaaggacacattgtataaagcccttatgagaactgtctt
tacttgtcacggtaaatctctcctgagagagactatgtatgcaaaagtga
acaatagagaga
tcaggatttactgtggctagaaggctggctcagccttgatagcagaacag
aggcaaaatcagaccaaatcaaacctgttctggtcaatgtttctgtcagc
ctgatacacgaaagggttgtctaggaggaaagacgctcgctgagaaagca
tccccatcagattggcccgctggcacgtctgtggggattttcttgattaa
tgatggaagtcaggggagcctagcccactgggcaggacgtctttattgta
taagaaaggcagctgagcaagacattggatccagccagtaagcagccttc
ctccatggcttctgcttcagtccctgcctccaggtcccttcaattgagtc
cctgccctggtttcccttcatgatggactgtaaacccttttcttcccagg
ttgcttttgattatgactttatcacagcaatagaaagctaactatgacaa
agaaaaacacacctctcacttcacaccccacacctcacaccccacactct
acaccccacacctcacaccccacaccccacacctcacactctacacccca
caccccacaccccatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92483378_92484289
seq2: B6Ng01-073E04.b_39_950 (reverse)

seq1  TCTCTCT----TTCACCTTTTGGCATACATAGGTCTCTCTCAGGAGAGAT  46
      |||||||    |||||  ||| ||||||||| ||||||||||||||||||
seq2  TCTCTCTATTGTTCAC--TTTTGCATACATA-GTCTCTCTCAGGAGAGAT  47

seq1  TTACCGTGACAAGTAAAGACAGTTCTCATTAAGGGCTTTATACAATGTGT  96
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTACCGTGACAAGTAAAGACAGTTCTCA-TAAGGGCTTTATACAATGTGT  96

seq1  CCTTGAAGCAGGTCTTTCATTAGTGTATGCAAACAAACAGATTGGGCTAC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGCAGGTCTTTCATTAGTGTATGCAAACAAACAGATTGGGCTAC  146

seq1  CAAGTTACCTCCAAGGAACTATAAAATGCCATGTTTCTATCGTTCATGGT  196
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGTTACCTCCAAGGAACTATAAAATGCCATGTTTCTATCGTACATGGT  196

seq1  TGCTTATTTCAGTTTCATCAAGACTTTGCAGACCGTGGGCAGAGGAGATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTCAGTTTCATCAAGACTTTGCAGACCGTGGGCAGAGGAGATA  246

seq1  ATTCAGGTGTTGAATGCTTGCCATGCAAACACACAGCCCTGAGTTTGCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGTTGAATGCTTGCCATGCAAACACACAGCCCTGAGTTTGCCT  296

seq1  TATAGAGACATTGTTTAAAAGCAAGGTGTGGCTTGGAATTTCATCACTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACATTGTTTAAAAGCAAGGTGTGGCTTGGAATTTCATCACTGG  346

seq1  GGAGGTAAAAAGAAAAAGACCCTTGTAGCTTACTGGCCACAGCCAGTCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAAAAGAAAAAGACCCTTGTAGCTTACTGGCCACAGCCAGTCTA  396

seq1  ACTGAGTCAGGGAGTTCCAGACCACTGAGAGATCCTGTCTAAAATCAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCAGGGAGTTCCAGACCACTGAGAGATCCTGTCTAAAATCAAAA  446

seq1  TGGAGTAAACAAACAAACAAGCATACCAAGGCAGACAGCATCCTAAGGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAACAAACAAACAAGCATACCAAGGCAGACAGCATCCTAAGGAA  496

seq1  TGTTACCGGAGGTTAATATCTAGCTTCCACATATGCACACACTCACAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCGGAGGTTAATATCTAGCTTCCACATATGCACACACTCACAAGT  546

seq1  GCTTATGTACGTGTGTACAGGTATACACATAGATGATGCTTCAAGGAACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTACGTGTGTACAGGTATACACATAGATGATGCTTCAAGGAACC  596

seq1  AGGCAATGAGATGTCCATTCCACTTTCAAGTTTTGGAGCCTTGAAACCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGAGATGTCCATTCCACTTTCAAGTTTTGGAGCCTTGAAACCTT  646

seq1  TGCTCTAAGTGTTTATTTTAAAGCCCTGGAATAAATAGAACAACCTTGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGTGTTTATTTTAAAGCCCTGGAATAAATAGAACAACCTTGTC  696

seq1  CAATCTAGTCACCTCCAAATCACAGCATTTAAGACCTGTATACACATTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGTCACCTCCAAATCACAGCATTTAAGACCTGTATACACATTAA  746

seq1  ACGTGCAAGCTCTGAAGTTATTTCAGACAAACAGATTCATGCTGTCTTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCAAGCTCTGAAGTTATTTCAGACAAACAGATTCATGCTGTCTTCC  796

seq1  GGGAGAAGCAATCCTAGTACTAATATGTCTTCCAATGGCCTCACACATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCAATCCTAGTACTAATATGTCTTCCAATGGCCTCACACATCT  846

seq1  TCCCAATCCTATGAGAAAGGGAGAGCCTGCCTTGCATGGGCTGTCCAGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCCTATGAGAAAGGGAGAGCCTGCCTTGCATGGGCTGTCCAGTT  896

seq1  TTTTCCACATGAATTC  912
      ||||||||||||||||
seq2  TTTTCCACATGAATTC  912

seq1: chr16_92281131_92281704
seq2: B6Ng01-073E04.g_70_643

seq1  GAATTCTCAGGATTTACTGTGGCTAGAAGGCTGGCTCAGCCTTGATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGATTTACTGTGGCTAGAAGGCTGGCTCAGCCTTGATAGCA  50

seq1  GAACAGAGGCAAAATCAGACCAAATCAAACCTGTTCTGGTCAATGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGGCAAAATCAGACCAAATCAAACCTGTTCTGGTCAATGTTTCT  100

seq1  GTCAGCCTGATACACGAAAGGGTTGTCTAGGAGGAAAGACGCTCGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTGATACACGAAAGGGTTGTCTAGGAGGAAAGACGCTCGCTGAG  150

seq1  AAAGCATCCCCATCAGATTGGCCCGCTGGCACGTCTGTGGGGATTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCCCCATCAGATTGGCCCGCTGGCACGTCTGTGGGGATTTTCTT  200

seq1  GATTAATGATGGAAGTCAGGGGAGCCTAGCCCACTGGGCAGGACGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGATGGAAGTCAGGGGAGCCTAGCCCACTGGGCAGGACGTCTTT  250

seq1  ATTGTATAAGAAAGGCAGCTGAGCAAGACATTGGATCCAGCCAGTAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAAGAAAGGCAGCTGAGCAAGACATTGGATCCAGCCAGTAAGCA  300

seq1  GCCTTCCTCCATGGCTTCTGCTTCAGTCCCTGCCTCCAGGTCCCTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTCCATGGCTTCTGCTTCAGTCCCTGCCTCCAGGTCCCTTCAAT  350

seq1  TGAGTCCCTGCCCTGGTTTCCCTTCATGATGGACTGTAAACCCTTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTGCCCTGGTTTCCCTTCATGATGGACTGTAAACCCTTTTCTT  400

seq1  CCCAGGTTGCTTTTGATTATGACTTTATCACAGCAATAGAAAGCTAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTGCTTTTGATTATGACTTTATCACAGCAATAGAAAGCTAACTA  450

seq1  TGACAAAGAAAAACACACCTCACACTTCACACCCCACACCTCACACCCCA  500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGACAAAGAAAAACACACCTCTCACTTCACACCCCACACCTCACACCCCA  500

seq1  CACTCTACACCCCACACCTCACACCCCACACCCCACACCTCACACTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACACCCCACACCTCACACCCCACACCCCACACCTCACACTCTAC  550

seq1  ACCCCACACCCCACACCCCATACC  574
      ||||||||||||||||||||||||
seq2  ACCCCACACCCCACACCCCATACC  574