BAC Information

Click to search

BAC

Clone NameB6Ng01-073G17
Chromosome16 (Build37)
Map Location 26,736,153 - 26,901,671
singlet/doubletdoublet
Overlap genenone
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073G17.bB6Ng01-073G17.g
ACCDH890558DH890559
length1,140704
definitionDH890558|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G17, 5' end.DH890559|Mus musculus domesticus DNA, BAC clone: B6Ng01-073G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,900,527 - 26,901,671)(26,736,153 - 26,736,853)
sequence
gaattcatgcctgctgcccacaggcacacacaaaaggcagacccaagtta
ctgcagcctcccaggtaaggaccaaagcagccatttgtcatcattaagtg
aatgggttattcttcattctcctgactgcaagttcataaaaaagaaggtg
gccgagaaaaaaaaaattgagccaaggaacaacaaaacttctgagcatag
acaagcataaatgccttagcctcaactttccctgtgttaagtgatgctaa
gtactaccatttattctccgtgtcatctgaagatgttttcttaactagct
ctataaactgcaaccctgtactcattatctataattaaaagtaatgttta
tctgttagataatttaagaaatgcaatgaatctaaggaaaaaaaaaacat
tagggagccaacaagatccaaagtcagaggtagtcacaatgtgcactgta
ccttttgtggtgacatttctgtgagtttgtgtgcatgtgtatgtacatta
tgactgcataggatgcacattaggattagtaggtgtggaaaatcactcat
ttccatatttggtatcatactatacatactattttgtattattttattca
acattaatatcacagagattttctttgcagttattccctattgggtgaaa
atataaaaatgatagattataggtggtattcaaaagatagatggaaatta
aaatctgtgatggcaccattgcaagtagtgatatacaataataataaatt
ttataatatataattatagcattactattattttatcagagtccaatcat
ttcaaagttactttttctgtttacaatatttaaaaattatttggtagaaa
tgtctgttgatgctcaggagagggaccttactgattgtgactgaaaagaa
cagtgaactttgaacttgtagatatttcgtcttgcgccttcctaaatggg
ttaattcagactagagagagaccactgaaacatattagatctgacaaaga
cattcattgtctgtagctttagtcagtaaatcatgcatggggtatatgta
tgcagttgcctccttatttaacccattcatattcctggacccagtcactt
aaaatgtccctctgtccaaagaatttttttcttccactgt
gaattcctggatagtctttctctaatgaacctaaaccaatctagagacca
aggaatcctatataatattccagcctctcagggaataaatacagaggagc
agaaaggatctagagagatggtaggcttgtgatgtcttagatggatcaaa
gcagaagaatatgttgtcctttgtgttttagtaagatatctctgcctgtt
ttgtggacagtaaagttaaggacaggataatggagttgcaacaaggcatg
agatagtggagatctggatcacatgctacctgaggagtagtgaaatgttc
ctgtggtaagatatgcctgaagagtatagttgtgcatgttaaactgacat
gatcttctgacagatgcaatcagtaacaggaaagcagaagaggctataga
atgatgtcatacttaggtctgagcaaacagaaggaacactctggggagag
agagattggtagttcagagttttgttgctcttcttggttttgtttgcttt
tagtttaagatgcatttggatcttaaaatgatgtcgtccaagagtgaact
tactgatgcaaacatgccatttgaatagaaaggttgcagaaggataaagt
catatttaattcatcaaaaaatatcagaaaaaccattagtcatagtgccc
aagaggtagtactaaagcataaaagttatgtgaggggaggatgatgggaa
gagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26900527_26901671
seq2: B6Ng01-073G17.b_44_1183 (reverse)

seq1  ACAGT-GAAGAAAAAAATTCTTTGGCAGGAGGGGACATGTTTAAGTGGCT  49
      ||||| |||||||||||||||||||   || ||||||| |||||||| ||
seq2  ACAGTGGAAGAAAAAAATTCTTTGGACAGA-GGGACAT-TTTAAGTGACT  48

seq1  TGGTCCAGGAATAGTGACTGGGTTAATATGAGGAGACAACTGCATACATA  99
       |||||||||||| ||| |||||||| || ||||| ||||||||||||||
seq2  GGGTCCAGGAATA-TGAATGGGTTAA-ATAAGGAGGCAACTGCATACATA  96

seq1  CTACCCCATGCATGATTTACTGACTAAAGCTTACAGACAATGGAATGTCT  149
       ||||||||||||||||||||||||||||| |||||||||| ||||||| 
seq2  -TACCCCATGCATGATTTACTGACTAAAGC-TACAGACAAT-GAATGTC-  142

seq1  TTTGTCAGTATCTAATAATGTTTTCTGTGGTCTCTCTCTAGTCTGAATTA  199
      |||||||| ||||||| ||| |||| ||||||||||||||||||||||||
seq2  TTTGTCAG-ATCTAAT-ATG-TTTCAGTGGTCTCTCTCTAGTCTGAATTA  189

seq1  ACCCATTTTTAGGAAGGCACAGGACGAAATATCTACAAGTTC-AAGTTCA  248
      |||||  ||||||||||| || |||||||||||||||||||| |||||||
seq2  ACCCA--TTTAGGAAGGCGCAAGACGAAATATCTACAAGTTCAAAGTTCA  237

seq1  CTGTTC-TTTCAGTCACAATCAGTAAGGTCCCTCTCCTTGAGCATC-ACA  296
      |||||| |||||||||||||||||||||||||||||| |||||||| |||
seq2  CTGTTCTTTTCAGTCACAATCAGTAAGGTCCCTCTCC-TGAGCATCAACA  286

seq1  GACATTTCTACCAAATAATTTTTAAATATTGTAAACAG-AAAAGTAACTT  345
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACATTTCTACCAAATAATTTTTAAATATTGTAAACAGAAAAAGTAACTT  336

seq1  TGAAATGATTGGACTCTGATAAAATAATAGTAATGCTATAATTATATATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATTGGACTCTGATAAAATAATAGTAATGCTATAATTATATATT  386

seq1  ATAAAATTTATTATTATTGTATATCACTACTTGC-ATGGTGCCATCACAG  444
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAAAATTTATTATTATTGTATATCACTACTTGCAATGGTGCCATCACAG  436

seq1  ATTTT-ACTTCCATCTATCTTTTGAATACCACCTATAATCTATCATTTTT  493
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTCCATCTATCTTTTGAATACCACCTATAATCTATCATTTTT  486

seq1  ATATTTTCACCCAATAGGGAATAACTGCAA--GAAATCTCTGTGATATTA  541
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  ATATTTTCACCCAATAGGGAATAACTGCAAAGAAAATCTCTGTGATATTA  536

seq1  ATGTTGAATAAAATAATACAAAATAGTATGTATAGTATGATACCAAATAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAATAAAATAATACAAAATAGTATGTATAGTATGATACCAAATAT  586

seq1  GGAAATGAGTGATTTTCCACACCTACTAATCCTAATGTGCATCCTATGCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGTGATTTTCCACACCTACTAATCCTAATGTGCATCCTATGCA  636

seq1  GTCATAATGTACATACACATGCACACAAACTCACAGAAATGTCACCACAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATGTACATACACATGCACACAAACTCACAGAAATGTCACCACAA  686

seq1  AAGGTACAGTGCACATTGTGACTACCTCTGACTTTGGATCTTGTTGGCTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACAGTGCACATTGTGACTACCTCTGACTTTGGATCTTGTTGGCTC  736

seq1  CCTAATGTTTTTTTTTTCCTTAGATTCATTGCATTTCTTAAATTATCTAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGTTTTTTTTTTCCTTAGATTCATTGCATTTCTTAAATTATCTAA  786

seq1  CAGATAAACATTACTTTTAATTATAGATAATGAGTACAGGGTTGCAGTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAACATTACTTTTAATTATAGATAATGAGTACAGGGTTGCAGTTT  836

seq1  ATAGAGCTAGTTAAGAAAACATCTTCAGATGACACGGAGAATAAATGGTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTAGTTAAGAAAACATCTTCAGATGACACGGAGAATAAATGGTA  886

seq1  GTACTTAGCATCACTTAACACAGGGAAAGTTGAGGCTAAGGCATTTATGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAGCATCACTTAACACAGGGAAAGTTGAGGCTAAGGCATTTATGC  936

seq1  TTGTCTATGCTCAGAAGTTTTGTTGTTCCTTGGCTCAATTTTTTTTTTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATGCTCAGAAGTTTTGTTGTTCCTTGGCTCAATTTTTTTTTTCT  986

seq1  CGGCCACCTTCTTTTTTATGAACTTGCAGTCAGGAGAATGAAGAATAACC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACCTTCTTTTTTATGAACTTGCAGTCAGGAGAATGAAGAATAACC  1036

seq1  CATTCACTTAATGATGACAAATGGCTGCTTTGGTCCTTACCTGGGAGGCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTTAATGATGACAAATGGCTGCTTTGGTCCTTACCTGGGAGGCT  1086

seq1  GCAGTAACTTGGGTCTGCCTTTTGTGTGTGCCTGTGGGCAGCAGGCATGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAACTTGGGTCTGCCTTTTGTGTGTGCCTGTGGGCAGCAGGCATGA  1136

seq1  ATTC  1145
      ||||
seq2  ATTC  1140

seq1: chr16_26736153_26736853
seq2: B6Ng01-073G17.g_69_772

seq1  GAATTCCTGGATAGTCTTTCTCTAATGAACCTAAACCAATCTAGAGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATAGTCTTTCTCTAATGAACCTAAACCAATCTAGAGACCA  50

seq1  AGGAATCCTATATAATATTCCAGCCTCTCAGGGAATAAATACAGAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCTATATAATATTCCAGCCTCTCAGGGAATAAATACAGAGGAGC  100

seq1  AGAAAGGATCTAGAGAGATGGTAGGCTTGTGATGTCTTAGATGGATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATCTAGAGAGATGGTAGGCTTGTGATGTCTTAGATGGATCAAA  150

seq1  GCAGAAGAATATGTTGTCCTTTGTGTTTTAGTAAGATATCTCTGCCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAATATGTTGTCCTTTGTGTTTTAGTAAGATATCTCTGCCTGTT  200

seq1  TTGTGGACAGTAAAGTTAAGGACAGGATAATGGAGTTGCAACAAGGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGACAGTAAAGTTAAGGACAGGATAATGGAGTTGCAACAAGGCATG  250

seq1  AGATAGTGGAGATCTGGATCACATGCTACCTGAGGAGTAGTGAAATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGGAGATCTGGATCACATGCTACCTGAGGAGTAGTGAAATGTTC  300

seq1  CTGTGGTAAGATATGCCTGAAGAGTATAGTTGTGCATGTTAAACTGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTAAGATATGCCTGAAGAGTATAGTTGTGCATGTTAAACTGACAT  350

seq1  GATCTTCTGACAGATGCAATCAGTAACAGGAAAGCAGAAGAGGCTATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTGACAGATGCAATCAGTAACAGGAAAGCAGAAGAGGCTATAGA  400

seq1  ATGATGTCATACTTAGGTCTGAGCAAACAGAAGGAACACTCTGGGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCATACTTAGGTCTGAGCAAACAGAAGGAACACTCTGGGGAGAG  450

seq1  AGAGATTGGTAGTTCAGAGTTTTGTTGCTCTTCTTGGTTTTGTTTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGGTAGTTCAGAGTTTTGTTGCTCTTCTTGGTTTTGTTTGCTTT  500

seq1  TAGTTTAAGATGCA-TTGGATCTTAAAATGATGTCGTCCAAGAGTGAACT  549
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGTTTAAGATGCATTTGGATCTTAAAATGATGTCGTCCAAGAGTGAACT  550

seq1  TACTGATGCAAACATGCCA-TTGAATAGAAAGGTTGCAGAAGGATAAAGT  598
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACTGATGCAAACATGCCATTTGAATAGAAAGGTTGCAGAAGGATAAAGT  600

seq1  CATATTTAATTCATCAAAAAATATCAG-AAAACCATTAGTCATAGTGCCC  647
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATATTTAATTCATCAAAAAATATCAGAAAAACCATTAGTCATAGTGCCC  650

seq1  AAGAGGTAGTACTAAAGCATAAAAGTTATGTGAGGGGAGGATGATGGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAGTACTAAAGCATAAAAGTTATGTGAGGGGAGGATGATGGGAA  700

seq1  GAGT  701
      ||||
seq2  GAGT  704