BAC Information

Click to search

BAC

Clone NameB6Ng01-073K01
Chromosome16 (Build37)
Map Location 25,765,563 - 25,913,501
singlet/doubletdoublet
Overlap geneTrp63
Upstream geneLpp, 5430420C16Rik
Downstream geneLOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073K01.bB6Ng01-073K01.g
ACCDH890696DH890697
length1,2151,059
definitionDH890696|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K01, 5' end.DH890697|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,912,261 - 25,913,501)(25,765,563 - 25,766,623)
sequence
gaattcagtacattatgaaaatcttacatcaagtttcaaactttaataga
acagatttccagcttctcttgtctctaagtcatgagtgttcttttaccca
ctcattttttgtcttcccttctctcattggttgcctagatgtctgatatg
aaattcagtactcaagtacagcaaccaggttgatcttgctttgttcagac
aagtattcattccacttataatcttattgctgtgttgtatttatatttat
tattgtgaagatccttaaattagttttcaataataatttgctcatcagct
gcttacattatttggcacactaaaatgtgtgccaagtagaccagatatat
ttttaatttctcagtttaaaaaagattagcaatccagaagcaaggcaaca
aataaataaattagcctaatgacattttaattgaataaaaaagaggaaaa
ttatgtaagaggtgcacaaatgttatatgggagaaaggaagaaaaattat
gcttaactaaaaatgacgagacagaacatggaaacacaaattgaatgaat
attctaagaatcattggaattgcaggacagagctatcactgcaagttggg
acagcatgcagtgagataaaagaagagaaaaataagaactcagagaagag
tctggtaaaggaagggctgagcaatttgcagtcactgaggctgacaggag
ccctgggtggggaaagcttatttaaaagctagtttctgagataacaaacc
cgtgcctctcctgctagaaacaagaccaaatattattcttcgtgatctta
agacttgtataaattctttaattaccacccaggagatttgtttactaagt
aaaaaacaagaaacaattgttgccccagggctgagagtaactaaggaaaa
gaaacacacctgctttcttggtcaccaatactaacattttaccttcttgc
atcttgaatggtaagctgagccaggagttggaaggatacagactttaggg
tggtgattcagttgactgtagccttgcacaccagttgtggggtggctgct
tgtgtatctctgcctaatcttcctacctttaatgacgtgctgaactgccc
tttattgtgcctgtagaagtaggccataattgggtttctaatggaactca
tcaattaagcaattgatggaaattggtgccttaggttaaatctgatatag
ctcctgtgccagggg
gaattcaattaagtaaagacatatacctttctctatatcccctcttttga
actgaaaagaattgacagctgtcaaaaattatagttgaatatgaattgtt
aacttctaccttagttctgttccaatacctccttatctttagctcgacat
acacatatttgggtatgaatggcagttacgtagatggggccaaattatag
caggcctcggcagcaggcatggcaaaacactgagtttgtgcaggatgcca
gtaattagtgttctgctgtgtaaattagaaagtagagactctaagatgcc
tagccccactcaactgctgcacgggtgtgtggggctttccaaggcttagt
agcagactttctcgtttccattataggttaattgctaaatactttcaaaa
gtctgcacataaattactttccccatcaatatagtattttaataagttgg
gaattcagccaattcctttctcactacacaagaaatacaactctataatg
ggcatgaggaggcatgtcgaattcttaaggacagaaattgaaaaattcat
cctatggattttctgagttttgatatggccaagaaatggaatcgtgatgt
tttggtcttattattaacaaaggaaattaaagtgcagatgttaaattagg
attattaaattttagattctgtgtgtcttttaaactagaatgtgtttcct
aattataaaattctgaatattagttctattgggatatgaatgggggtaaa
tgaaatgtctcaaaaaatcatattttaactctatttttcaagtgccttaa
tgaaccttgattctgttgtttgatatattgctgtatttctcagatttgta
ttattttggatctgtgtaagcatgtctctattatgtttgaggtatgaatc
caatattaacagttacacattctcctcagtgatggatgctggccaggcaa
gcatttgcatttatttattctttatctttcatgctaatagaattttcttt
aaggaactgactgttactatcctaaaatgctaatgtatttttaaatccta
atggactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25912261_25913501
seq2: B6Ng01-073K01.b_41_1255 (reverse)

seq1  CCCCTGCCCCCAGGAGCTA-ATCAGGACTTTTTTAACCTAGGGCAAACAA  49
      ||||||  | ||||||||| |||||      ||||||||| ||| | |||
seq2  CCCCTG-GCACAGGAGCTATATCAG-----ATTTAACCTAAGGC-ACCAA  43

seq1  TTTTTCAATC-ATTGCTTTAAATTTGATGAGGTTCCATTAAGAAACCCCA  98
        |||| ||| |||||||   | ||||||| |||||||| |||||||| |
seq2  --TTTCCATCAATTGCTT---AATTGATGA-GTTCCATT-AGAAACCCAA  86

seq1  TGTATGCCCTACTTCTAACAGGCAAACATATAAAGAGACAGTCTAAGCAC  148
      | |||| ||||||||| ||||||| |   |||||| | |||| | |||||
seq2  T-TATGGCCTACTTCT-ACAGGCACA---ATAAAG-GGCAGT-TCAGCAC  129

seq1  GTCATTAAAGGTAGGAAGATTAAGGCAGAAGATTACACAAGCAGCCA-CC  197
      ||||||||||||||||||||| |||||| ||| |||||||||||||| ||
seq2  GTCATTAAAGGTAGGAAGATT-AGGCAG-AGA-TACACAAGCAGCCACCC  176

seq1  CAC-ACTGGTGTTGCAAGGCTAACAGTCAACCTGAATCACCACCCTAAAG  246
      ||| ||||||| ||||||||| |||||||| |||||||||||||||||||
seq2  CACAACTGGTG-TGCAAGGCT-ACAGTCAA-CTGAATCACCACCCTAAAG  223

seq1  TCTGTATTCCTTCCAACTCCTGGCTTCAGCTTACCATTCAAGATGCAAGA  296
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGTA-TCCTTCCAACTCCTGGC-TCAGCTTACCATTCAAGATGCAAGA  271

seq1  AGGTAAAATGTTAGTATTGGTGACCAAGAAAGCAGGTGTGTTTCTTTTTC  346
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGTAAAATGTTAGTATTGGTGACCAAGAAAGCAGGTGTGTTTC-TTTTC  320

seq1  CTTAGTTACTCTCAGCCCTGGGGCAACAATTGTTTCTTGTTTTTTACTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTACTCTCAGCCCTGGGGCAACAATTGTTTCTTGTTTTTTACTTA  370

seq1  GTAAACAAATCTCCTGGGTGGTAATTAAAGAATTTATACAAGTCTTAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAATCTCCTGGGTGGTAATTAAAGAATTTATACAAGTCTTAAGA  420

seq1  TCACGAAGAATAATATTTGGTCTTGTTTCTAGCAGGAGAGGCACGGGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAAGAATAATATTTGGTCTTGTTTCTAGCAGGAGAGGCACGGGTTT  470

seq1  GTTATCTCAGAAACTAGCTTTTAAATAAGCTTTCCCCACCCAGGGCTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCAGAAACTAGCTTTTAAATAAGCTTTCCCCACCCAGGGCTCCT  520

seq1  GTCAGCCTCAGTGACTGCAAATTGCTCAGCCCTTCCTTTACCAGACTCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTCAGTGACTGCAAATTGCTCAGCCCTTCCTTTACCAGACTCTT  570

seq1  CTCTGAGTTCTTATTTTTCTCTTCTTTTATCTCACTGCATGCTGTCCCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTCTTATTTTTCTCTTCTTTTATCTCACTGCATGCTGTCCCAA  620

seq1  CTTGCAGTGATAGCTCTGTCCTGCAATTCCAATGATTCTTAGAATATTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTGATAGCTCTGTCCTGCAATTCCAATGATTCTTAGAATATTCA  670

seq1  TTCAATTTGTGTTTCCATGTTCTGTCTCGTCATTTTTAGTTAAGCATAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTGTGTTTCCATGTTCTGTCTCGTCATTTTTAGTTAAGCATAAT  720

seq1  TTTTCTTCCTTTCTCCCATATAACATTTGTGCACCTCTTACATAATTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTTTCTCCCATATAACATTTGTGCACCTCTTACATAATTTTC  770

seq1  CTCTTTTTTATTCAATTAAAATGTCATTAGGCTAATTTATTTATTTGTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTATTCAATTAAAATGTCATTAGGCTAATTTATTTATTTGTTG  820

seq1  CCTTGCTTCTGGATTGCTAATCTTTTTTAAACTGAGAAATTAAAAATATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTCTGGATTGCTAATCTTTTTTAAACTGAGAAATTAAAAATATA  870

seq1  TCTGGTCTACTTGGCACACATTTTAGTGTGCCAAATAATGTAAGCAGCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTACTTGGCACACATTTTAGTGTGCCAAATAATGTAAGCAGCTG  920

seq1  ATGAGCAAATTATTATTGAAAACTAATTTAAGGATCTTCACAATAATAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAAATTATTATTGAAAACTAATTTAAGGATCTTCACAATAATAAA  970

seq1  TATAAATACAACACAGCAATAAGATTATAAGTGGAATGAATACTTGTCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACAACACAGCAATAAGATTATAAGTGGAATGAATACTTGTCTG  1020

seq1  AACAAAGCAAGATCAACCTGGTTGCTGTACTTGAGTACTGAATTTCATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCAAGATCAACCTGGTTGCTGTACTTGAGTACTGAATTTCATAT  1070

seq1  CAGACATCTAGGCAACCAATGAGAGAAGGGAAGACAAAAAATGAGTGGGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATCTAGGCAACCAATGAGAGAAGGGAAGACAAAAAATGAGTGGGT  1120

seq1  AAAAGAACACTCATGACTTAGAGACAAGAGAAGCTGGAAATCTGTTCTAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACACTCATGACTTAGAGACAAGAGAAGCTGGAAATCTGTTCTAT  1170

seq1  TAAAGTTTGAAACTTGATGTAAGATTTTCATAATGTACTGAATTC  1241
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGAAACTTGATGTAAGATTTTCATAATGTACTGAATTC  1215

seq1: chr16_25765563_25766623
seq2: B6Ng01-073K01.g_67_1125

seq1  GAATTCAATTAAGTAAAGACATATACCTTTCTCTATATCCCCTCTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAGTAAAGACATATACCTTTCTCTATATCCCCTCTTTTGA  50

seq1  ACTGAAAAGAATTGACAGCTGTCAAAAATTATAGTTGAATATGAATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGAATTGACAGCTGTCAAAAATTATAGTTGAATATGAATTGTT  100

seq1  AACTTCTACCTTAGTTCTGTTCCAATACCTCCTTATCTTTAGCTCGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACCTTAGTTCTGTTCCAATACCTCCTTATCTTTAGCTCGACAT  150

seq1  ACACATATTTGGGTATGAATGGCAGTTACGTAGATGGGGCCAAATTATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTTGGGTATGAATGGCAGTTACGTAGATGGGGCCAAATTATAG  200

seq1  CAGGCCTCGGCAGCAGGCATGGCAAAACACTGAGTTTGTGCAGGATGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCGGCAGCAGGCATGGCAAAACACTGAGTTTGTGCAGGATGCCA  250

seq1  GTAATTAGTGTTCTGCTGTGTAAATTAGAAAGTAGAGACTCTAAGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGTGTTCTGCTGTGTAAATTAGAAAGTAGAGACTCTAAGATGCC  300

seq1  TAGCCCCACTCAACTGCTGCACGGGTGTGTGGGGCTTTCCAAGGCTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCACTCAACTGCTGCACGGGTGTGTGGGGCTTTCCAAGGCTTAGT  350

seq1  AGCAGACTTTCTCGTTTCCATTATAGGTTAATTGCTAAATACTTTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTTTCTCGTTTCCATTATAGGTTAATTGCTAAATACTTTCAAAA  400

seq1  GTCTGCACATAAATTACTTTCCCCATCAATATAGTATTTTAATAAGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACATAAATTACTTTCCCCATCAATATAGTATTTTAATAAGTTGG  450

seq1  GAATTCAGCCAATTCCTTTCTCACTACACAAGAAATACAACTCTATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCAATTCCTTTCTCACTACACAAGAAATACAACTCTATAATG  500

seq1  GGCATGAGGAGGCATGTCGAATTCTTAAGGACAGAAATTGAAAAATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGGAGGCATGTCGAATTCTTAAGGACAGAAATTGAAAAATTCAT  550

seq1  CCTATGGATTTTCTGAGTTTTGATATGGCCAAGAAATGGAATCGTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGATTTTCTGAGTTTTGATATGGCCAAGAAATGGAATCGTGATGT  600

seq1  TTTGGTCTTATTATTAACAAAGGAAATTAAAGTGCAGATGTTAAATTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTATTATTAACAAAGGAAATTAAAGTGCAGATGTTAAATTAGG  650

seq1  ATTATTAAATTTTAGATTCTGTGTGTCTTTTAAACTAGAATGTGTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAATTTTAGATTCTGTGTGTCTTTTAAACTAGAATGTGTTTCCT  700

seq1  AATTATAAAATTCTGAATATTAGTTCTATTGGGATATGAATGGGGGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAATTCTGAATATTAGTTCTATTGGGATATGAATGGGGGTAAA  750

seq1  TGAAATGTCTCAAAAAATCATATTTTAACTCTATTTTTCAAGTGCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTCTCAAAAAATCATATTTTAACTCTATTTTTCAAGTGCCTTAA  800

seq1  TGAACCTTGATTCTGTTGTTTGATATATTGCTGTATTTCTCAGATTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTGATTCTGTTGTTTGATATATTGCTGTATTTCTCAGATTTGTA  850

seq1  TTATTTTGGATCTGTGTAAGCATGTCTCTATTATGTTTGAGGTATGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTATTTTGGATCTGTGTAAGCATGTCTCTATTATGTTTGAGGTATGAATC  900

seq1  CAATATTAACAGTTACACATTCTCCTCAGTGATGGATGCTGGCCAAGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAATATTAACAGTTACACATTCTCCTCAGTGATGGATGCTGGCCAGGCAA  950

seq1  GCATTTGCATTTATTTATTCTTTATCTTTCATGCTAAATTAGAATTTTCT  1000
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GCATTTGCATTTATTTATTCTTTATCTTTCATGCTAA--TAGAATTTTCT  998

seq1  TTAAGGAAACTGACTGGTAACTAT-CTAAAATGCT-ATGTATTTTTAAAT  1048
      |||||| |||||||| || ||||| |||||||||| ||||||||||||||
seq2  TTAAGG-AACTGACT-GTTACTATCCTAAAATGCTAATGTATTTTTAAAT  1046

seq1  CCTAATGGACTCA  1061
      |||||||||||||
seq2  CCTAATGGACTCA  1059