BAC Information

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BAC

Clone NameB6Ng01-075B04
Chromosome16 (Build37)
Map Location 97,722,627 - 97,847,309
singlet/doubletdoublet
Overlap geneORF9, Mx2, Tmprss2
Upstream genePcp4, Dscam, Bace2, Mx1, EG668559, LOC100041436
Downstream geneRipk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075B04.bB6Ng01-075B04.g
ACCDH891733DH891734
length1,1821,088
definitionDH891733|Mus musculus domesticus DNA, BAC clone: B6Ng01-075B04, 5' end.DH891734|Mus musculus domesticus DNA, BAC clone: B6Ng01-075B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,722,627 - 97,723,814)(97,846,213 - 97,847,309)
sequence
gaattcctagagatgacaaacttcactatgggcactcagcgatgctctac
agcctatcacactacccgtttctggacctcagactcctgggaaggcaggt
tttggtagattctgtctggaacagcatgttctagaaaattctttggggca
gattatgtgctaggacagctgcagaatacgaacaaagccagggacatgct
ggtctggacaattttatcctagggcttgtataaaaaaagaaaactggcaa
atgaaatgaaattcagagggtcacccagactcctacatgtgagagaccct
gagcaggagctgctgcgcaacttttggaatgggtgaagaacagattatca
gaaccagggtggggatctgaccaggaagaaaatggagaatgtacaaaaag
ccagacaccctcccagggaagactccacttcgtgacaggactgcctgtgg
gcaagcaatgagctccatcgtggacccttatcaggactctgttcttgtgt
aggaagtacagcctctggcctccagcatgaggcagtctggctttttgcag
tgacatgaggctggctagaagagggcagaattaacgccgggagcatttgt
agtgtaggcaggtagagccaggagcatccagggaccagtctaccaccaaa
ggagtagggacgggggcagatacaaaaacccacattggtggcttgtactc
atatcttgggctgccataacaaagaactgtagactaagagtgtcaattga
aacattttttttttcatgatagtagatgctgggggccaagatcaaggtgt
cgcagggccagtcccccaacacatattggcttgtagatagtatcttcctc
ctgtgtccttggtggtcatccctctgaatgtctgtatcctgatcactttt
tcttgaaaagacaaagtcctggctctaacctatgagcttcatttgaactc
atctgaacactttaaatgcagtcccattctgagatcctgacggacagact
ttagcacaggtattgggcacattcagtcccttatcatattttcagagcta
caacacagacttcttttacatccctgggcagaaaggacacaagacagtct
gtcaactgttctaccagcactaatagcagcaagactttgcactgaactga
accagtaggtgctttctgaaagtgggaggccg
gaattctgaagatcactgtcactgctgggatcatcatctcttcttcatcc
taggggttccaggtcctcactggtccttctgggttcattggatgaatgaa
accttttcttctctctcctcatccacctttctagagtgctgccatccagg
gcttttcctgcctcaatgagccctttttgctagccttctgtcctgagatt
tctaccaatcttccctcacaggtatccctgagctctatctgtggctgcag
ccttccctagtggcttattcaaggcccagctttatgtaacatgacttgct
gatgactctcagcccccttttccattcttaaactccacagaagcccagaa
atccccatggaatggtaaatttaacatgtccaagaaaaaggtctgatctc
tttcttcatctgtgttcctgtttgttttgccaaagtcaaacaaagatgca
gagacaagatggatctctatctcagttagttttttttttattgctgtgat
gaaacatcatgaccaaaaagcaagttggggaggaaagggtttatttggtt
tacacttctatatcattgttcatcatcgaaggaagtcaggacaagaactc
aaacaggtcaggaacctagagccaggatctgatgcagagaccataaagga
gtacagcgtactgactttctcatcatggctcattcagcctgctttcttat
agaacttacgaccacctgcccagggttggtcacacccacagtgggctgga
ccctcccctatcaatcactaattaataaaatgccaataggtttgtttata
gcctgatctatgaggtattgtcatttgaggcttcctcctctccaatgact
ctagcttgtgtcaagttgaaataaaaactagtcagcacaatgttccatag
aaagagcattcatttggaaatgaaggacagtattgcaagcctcaacgtta
tttccagttgggcaatttgctcaagtgtccccaaacaaaggaagattgga
gctttactggcaagtgtttgaggagttggaggtctactggtaagctaagg
catagtgcaaaagttttaggccacctccactctatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97722627_97723814
seq2: B6Ng01-075B04.b_43_1225

seq1  GGAATTCCTAGAGATGACAAACTTCACTATGGGCACTCAGCGATGCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTAGAGATGACAAACTTCACTATGGGCACTCAGCGATGCTCTA  50

seq1  CAGCCTATCACACTACCCGTTTCTGGACCTCAGACTCCTGGGAAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATCACACTACCCGTTTCTGGACCTCAGACTCCTGGGAAGGCAGG  100

seq1  TTTTGGTAGATTCTGTCTGGAACAGCATGTTCTAGAAAATTCTTTGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAGATTCTGTCTGGAACAGCATGTTCTAGAAAATTCTTTGGGGC  150

seq1  AGATTATGTGCTAGGACAGCTGCAGAATACGAACAAAGCCAGGGACATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTGCTAGGACAGCTGCAGAATACGAACAAAGCCAGGGACATGC  200

seq1  TGGTCTGGACAATTTTATCCTAGGGCTTGTATAAAAAAAGAAAACTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGACAATTTTATCCTAGGGCTTGTATAAAAAAAGAAAACTGGCA  250

seq1  AATGAAATGAAATTCAGAGGGTCACCCAGACTCCTACATGTGAGAGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGAAATTCAGAGGGTCACCCAGACTCCTACATGTGAGAGACCC  300

seq1  TGAGCAGGAGCTGCTGCGCAACTTTTGGAATGGGTGAAGAACAGATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGAGCTGCTGCGCAACTTTTGGAATGGGTGAAGAACAGATTATC  350

seq1  AGAACCAGGGTGGGGATCTGACCAGGAAGAAAATGGAGAATGTACAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGGGTGGGGATCTGACCAGGAAGAAAATGGAGAATGTACAAAAA  400

seq1  GCCAGACACCCTCCCAGGGAAGACTCCACTTCGTGACAGGACTGCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACACCCTCCCAGGGAAGACTCCACTTCGTGACAGGACTGCCTGTG  450

seq1  GGCAAGCAATGAGCTCCATCGTGGACCCTTATCAGGACTCTGTTCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAATGAGCTCCATCGTGGACCCTTATCAGGACTCTGTTCTTGTG  500

seq1  TAGGAAGTACAGCCTCTGGCCTCCAGCATGAGGCAGTCTGGCTTTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTACAGCCTCTGGCCTCCAGCATGAGGCAGTCTGGCTTTTTGCA  550

seq1  GTGACATGAGGCTGGCTAGAAGAGGGCAGAATTAACGCCGGGAGCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATGAGGCTGGCTAGAAGAGGGCAGAATTAACGCCGGGAGCATTTG  600

seq1  TAGTGTAGGCAGGTAGAGCCAGGAGCATCCAGGGACCAGTCTACCACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGGCAGGTAGAGCCAGGAGCATCCAGGGACCAGTCTACCACCAA  650

seq1  AGGAGTAGGGACGGGGGCAGATACAAAAACCCACATTGGTGGCTTGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGGGACGGGGGCAGATACAAAAACCCACATTGGTGGCTTGTACT  700

seq1  CATATCTTGGGCTGCCATAACAAAGAACTGTAGACTAAGAGTGTCAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTGGGCTGCCATAACAAAGAACTGTAGACTAAGAGTGTCAATTG  750

seq1  AAACA-TTTTTTTTTCATGATAGTAGATGCTGGGGGCCAAGATCAAGGTG  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTTTTTTCATGATAGTAGATGCTGGGGGCCAAGATCAAGGTG  800

seq1  TCGCAGGGCCAGTCCCCCAACACATATTGGCTTGTAGATAGTATCTTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGGCCAGTCCCCCAACACATATTGGCTTGTAGATAGTATCTTCCT  850

seq1  CCTGTGTCCTTGGTGGTCATCCCTCTGAATGTCTGTATCCTGATCACTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCCTTGGTGGTCATCCCTCTGAATGTCTGTATCCTGATCACTTT  900

seq1  TTCTTGAAAAGACAAAGTCCTGGCTCTAACCTATGAGC-TCATTTGAACT  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTTGAAAAGACAAAGTCCTGGCTCTAACCTATGAGCTTCATTTGAACT  950

seq1  CATCTGAACACTTTAAATGCAGTCCCATTCTGAGATCCTGACGGACAGAA  998
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATCTGAACACTTTAAATGCAGTCCCATTCTGAGATCCTGACGGACAG-A  999

seq1  CTTTAGCACAGGTATTTGGGCACAATTCAGTCCC-TATCATATCTCCAGG  1047
      |||||||||||||| |||||||| |||||||||| |||||||| | ||| 
seq2  CTTTAGCACAGGTA-TTGGGCAC-ATTCAGTCCCTTATCATATTTTCAG-  1046

seq1  AGGCTACAACACAGACT--CTCTACATCCCTGGGCAGACAGGACAC-AGA  1094
        |||||||||||||||   | |||||||||||||||| ||||||| |||
seq2  -AGCTACAACACAGACTTCTTTTACATCCCTGGGCAGAAAGGACACAAGA  1095

seq1  CAGTCTGTCAAAACTG-TCTACCAGCACTAATAGCAGCAAAGACTTGGCA  1143
      |||||||||  ||||| ||||||||||||||||||||| ||||||| |||
seq2  CAGTCTGTC--AACTGTTCTACCAGCACTAATAGCAGC-AAGACTTTGCA  1142

seq1  CCAGAACTGAACACAAGGAAGGTGCTTCTGGAAGGTGGGAGGCCG  1188
       | ||||||||| ||  | ||||||||   ||| |||||||||||
seq2  -CTGAACTGAAC-CA--GTAGGTGCTTTCTGAAAGTGGGAGGCCG  1183

seq1: chr16_97846213_97847309
seq2: B6Ng01-075B04.g_68_1155 (reverse)

seq1  TCCATAGAGTTGTGGGTGGCCTAAACACTCTGCACATATGCCTATGCTAA  50
      ||||||||| ||  |||||||||||   | ||||| |||||||  ||| |
seq2  TCCATAGAG-TGGAGGTGGCCTAAAACTTTTGCAC-TATGCCTTAGCTTA  48

seq1  CCAGTTAGAACCTCCAAACTCCTCAAACACTTGCCAGTAAAGCTCCCAAT  100
      |||| ||| |||||| |||||||||||||||||||||||||||| |||||
seq2  CCAG-TAG-ACCTCC-AACTCCTCAAACACTTGCCAGTAAAGCT-CCAAT  94

seq1  CTTTCCCTTTGTTTGGGGGACACTTGAGC-AATTGCCCAACTGGAAATAA  149
      |||  ||||||||| |||||||||||||| |||||||||||||||||| |
seq2  CTT--CCTTTGTTT-GGGGACACTTGAGCAAATTGCCCAACTGGAAAT-A  140

seq1  ACGTTGAGGCCTGCAATACTGTCCTTCATTTCCAAATGAATGCTCTTTCT  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGAGGCTTGCAATACTGTCCTTCATTTCCAAATGAATGCTCTTTCT  190

seq1  ATTGGACATTGTGCTGACTAG-TTTTATGTCAACTTGACACAAGCTAGAG  248
      || | |||||||||||||||| |||||| |||||||||||||||||||||
seq2  ATGGAACATTGTGCTGACTAGTTTTTATTTCAACTTGACACAAGCTAGAG  240

seq1  TCATTGGAGAGGAGGAAGCCTCAAATGACAATACCTCATAAGATCAGGCT  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCATTGGAGAGGAGGAAGCCTCAAATGACAATACCTCAT-AGATCAGGCT  289

seq1  ATAAACAAACCTATTGGCATTTTATTAATTAGTGATTGATAGGGGAGGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAACCTATTGGCATTTTATTAATTAGTGATTGATAGGGGAGGGT  339

seq1  CCAGCCCACTGTGGGTGTGACCAACCCTGGGCAGGTGGTCGTAAGTTCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCACTGTGGGTGTGACCAACCCTGGGCAGGTGGTCGTAAGTTCTA  389

seq1  TAAGAAAGCAGGCTGAATGAGCCATGATGAGAAAGTCAGTACGCTGTACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGCAGGCTGAATGAGCCATGATGAGAAAGTCAGTACGCTGTACT  439

seq1  CCTTTATGGTCTCTGCATCAGATCCTGGCTCTAGGTTCCTGACCTGTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGGTCTCTGCATCAGATCCTGGCTCTAGGTTCCTGACCTGTTTG  489

seq1  AGTTCTTGTCCTGACTTCCTTCGATGATGAACAATGATATAGAAGTGTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGTCCTGACTTCCTTCGATGATGAACAATGATATAGAAGTGTAA  539

seq1  ACCAAATAAACCCTTTCCTCCCCAACTTGCTTTTTGGTCATGATGTTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAAACCCTTTCCTCCCCAACTTGCTTTTTGGTCATGATGTTTCA  589

seq1  TCACAGCAATAAAAAAAAAACTAACTGAGATAGAGATCCATCTTGTCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAATAAAAAAAAAACTAACTGAGATAGAGATCCATCTTGTCTCT  639

seq1  GCATCTTTGTTTGACTTTGGCAAAACAAACAGGAACACAGATGAAGAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTGTTTGACTTTGGCAAAACAAACAGGAACACAGATGAAGAAAG  689

seq1  AGATCAGACCTTTTTCTTGGACATGTTAAATTTACCATTCCATGGGGATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGACCTTTTTCTTGGACATGTTAAATTTACCATTCCATGGGGATT  739

seq1  TCTGGGCTTCTGTGGAGTTTAAGAATGGAAAAGGGGGCTGAGAGTCATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTTCTGTGGAGTTTAAGAATGGAAAAGGGGGCTGAGAGTCATCA  789

seq1  GCAAGTCATGTTACATAAAGCTGGGCCTTGAATAAGCCACTAGGGAAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCATGTTACATAAAGCTGGGCCTTGAATAAGCCACTAGGGAAGGC  839

seq1  TGCAGCCACAGATAGAGCTCAGGGATACCTGTGAGGGAAGATTGGTAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCACAGATAGAGCTCAGGGATACCTGTGAGGGAAGATTGGTAGAA  889

seq1  ATCTCAGGACAGAAGGCTAGCAAAAAGGGCTCATTGAGGCAGGAAAAGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGACAGAAGGCTAGCAAAAAGGGCTCATTGAGGCAGGAAAAGCC  939

seq1  CTGGATGGCAGCACTCTAGAAAGGTGGATGAGGAGAGAGAAGAAAAGGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGCAGCACTCTAGAAAGGTGGATGAGGAGAGAGAAGAAAAGGTT  989

seq1  TCATTCATCCAATGAACCCAGAAGGACCAGTGAGGACCTGGAACCCCTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATCCAATGAACCCAGAAGGACCAGTGAGGACCTGGAACCCCTAG  1039

seq1  GATGAAGAAGAGATGATGATCCCAGCAGTGACAGTGATCTTCAGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAGAGATGATGATCCCAGCAGTGACAGTGATCTTCAGAATTC  1088