BAC Information

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BAC

Clone NameB6Ng01-075K06
Chromosome16 (Build37)
Map Location 35,983,035 - 36,128,547
singlet/doubletdoublet
Overlap geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneStfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075K06.bB6Ng01-075K06.g
ACCDH892145DH892146
length1,155779
definitionDH892145|Mus musculus domesticus DNA, BAC clone: B6Ng01-075K06, 5' end.DH892146|Mus musculus domesticus DNA, BAC clone: B6Ng01-075K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,127,399 - 36,128,547)(35,983,035 - 35,983,813)
sequence
gaattccaagtatgtttattggagggaaaggaatgttattttaaggatta
tttttagaagcacaggctgtgattacacatgcaaatgtatgtgcacactg
catttgctcatcctcacgcagaaacctggtcggtgagctccacccctggc
gaacacactaagcatgagcttcgttggccaggacaccacacaaatacctc
cgtgcagctgggcacaccctgagctttagcgagccatggctcccattgac
ctcatctacagatttatgttcctttctctccaacctaaactttctggtca
gtcaattctgttgtcccatccccagagaacctgccattcagccgcaccag
aatctcaaggcacctacccctccggtcttatcagaaaaagcctcgatcct
tctggtcacttgtccaagatggatgttttcctatactcctccactctaat
tcctatgatcctgtgatccatgacattccaatcttcagttagagatcatt
ccctctctgtcctccctcctcctccacttctgctccagggagtcacagaa
ccacagaaagttcaccattccaatgtgatacaagaatatccatgtctcag
caggaccctggggacacacagcatccctttacttctatttgctgttgttt
ttctagagatctataccctctgcccctgcctcccaccccaccctgccttc
cacggtcttcccagcaagtttctcagttcttaccctgcttagaaaattgc
tggcatctgcaagggaacaacaccctagcttatcatattgcttcaggtct
tactacttccttcagtcctacgctctctttccctccactcatagtctagt
aacttgatttttcttgtgtcctgtgtgtttttcttcatatttccttctaa
gcatattggttgacaaaacgtccattaagacatgccccaccagccttacc
atattttgcataagcctccgaactctcttttccttgttgggaaatttcct
taaataacatctatctaagcttgcttccagcatcttctatcattctgctc
tgaaatgactgcagcttgggaaatgcattgggtgtggatgcctccatggc
tcgattcttcatatcctagaaacctacaactcagagagatttcacactac
cttgg
gaattctttgaacgtgagacactgacgtattttgtaatactccctcagcc
tccaaccatgccatcattcatccaataagcatgctcggctgtgaggtacc
taccatgtgagagggaagctatattgatgtgagggggaatccgtccattc
tggaagagcttagtaaggacaagtttgtttccataacttctatatgtctg
cgcttttactgactgccaacctggtccgcagagacccacgccctggccgc
cgccttttccctggccgccgctagcctagggcgtccacgctcggagactc
cgcttcccggcagcccctgcggcaggcggcggagaagcgcacgcaggcgc
gccggccggcccccgcacgcaggcgcagtgcgcacgccggctgagctggg
tctcgcggctctgtgagcggcagcggagagcgaggcctggtgagcgccgc
cgtggtgcgcgccggctggtcaaggttgtgcgcagaagaggcgcagcggg
cgggccaagagcgagcgtctccctcttcgtagtggcaccgggaccggtcg
cctggagccggtgagtgggggcacctcgcggcccctccccctcggcgggc
ggctctgggtccccctccgcggacccgagggaggccccggggcgaaggcg
gacgcgggcggaagccggagctggctcgggcgcgccggggaccggaccct
cgcgtcgctccggtgcgtcacgggcccggcggtcctaacggccgcgcggc
ggcggagcggggtgggggtggggaacgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36127399_36128547
seq2: B6Ng01-075K06.b_45_1199 (reverse)

seq1  CCAA-GTAGTGTG-AATCTCTCTGAGTTGTTAGTTTTCTAGGATATGAAG  48
      |||| |||||||| ||||||||||||||| ||| ||||||||||||||||
seq2  CCAAGGTAGTGTGAAATCTCTCTGAGTTG-TAGGTTTCTAGGATATGAAG  49

seq1  AATCGAGCCATGGAGGCATCCACA-CCAATGCATTTCCCAAGCCTGCAGT  97
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AATCGAGCCATGGAGGCATCCACACCCAATGCATTTCCCAAG-CTGCAGT  98

seq1  CATTTTCAGAGCAGAATGGATAGAAGATGCTGGATGCAAGC-TAGATAGA  146
      || |||||||||||||| |||||||||||||||| |||||| ||||||||
seq2  CA-TTTCAGAGCAGAAT-GATAGAAGATGCTGGAAGCAAGCTTAGATAGA  146

seq1  TGTTATTTAAGGAAATTT-CCAACAA-GAAAAGAGAGTTCGGAGGCTTAT  194
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TGTTATTTAAGGAAATTTCCCAACAAGGAAAAGAGAGTTCGGAGGCTTAT  196

seq1  GC-AAATATGGTAAGGCTGGTGGGGCATGTCTT-ATGGACG-TTTGTCAA  241
      || |||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GCAAAATATGGTAAGGCTGGTGGGGCATGTCTTAATGGACGTTTTGTCAA  246

seq1  CCAATATGCTTAGAAGGAAATATGAAGAAAAACACACAGGACACAAG-AA  290
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAATATGCTTAGAAGGAAATATGAAGAAAAACACACAGGACACAAGAAA  296

seq1  AATCAAGTTACTAGACTATGAGTGGAGGGAAAGAGAGCGTAGGACTGAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTTACTAGACTATGAGTGGAGGGAAAGAGAGCGTAGGACTGAAG  346

seq1  GAAGTAGTAAGACCTGAAGCAATATGATAAGCTAGGGTGTTGTTCCCTTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTAAGACCTGAAGCAATATGATAAGCTAGGGTGTTGTTCCCTTG  396

seq1  CAGATGCCAGCAATTTTCTAAGCAGGGTAAGAACTGAGAAACTTGCTGGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCAGCAATTTTCTAAGCAGGGTAAGAACTGAGAAACTTGCTGGG  446

seq1  AAGACCGTGGAAGGCAGGGTGGGGTGGGAGGCAGGGGCAGAGGGTATAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGTGGAAGGCAGGGTGGGGTGGGAGGCAGGGGCAGAGGGTATAGA  496

seq1  TCTCTAGAAAAACAACAGCAAATAGAAGTAAAGGGATGCTGTGTGTCCCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAAAAACAACAGCAAATAGAAGTAAAGGGATGCTGTGTGTCCCC  546

seq1  AGGGTCCTGCTGAGACATGGATATTCTTGTATCACATTGGAATGGTGAAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTGCTGAGACATGGATATTCTTGTATCACATTGGAATGGTGAAC  596

seq1  TTTCTGTGGTTCTGTGACTCCCTGGAGCAGAAGTGGAGGAGGAGGGAGGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGTTCTGTGACTCCCTGGAGCAGAAGTGGAGGAGGAGGGAGGA  646

seq1  CAGAGAGGGAATGATCTCTAACTGAAGATTGGAATGTCATGGATCACAGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAATGATCTCTAACTGAAGATTGGAATGTCATGGATCACAGG  696

seq1  ATCATAGGAATTAGAGTGGAGGAGTATAGGAAAACATCCATCTTGGACAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGAATTAGAGTGGAGGAGTATAGGAAAACATCCATCTTGGACAA  746

seq1  GTGACCAGAAGGATCGAGGCTTTTTCTGATAAGACCGGAGGGGTAGGTGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGAAGGATCGAGGCTTTTTCTGATAAGACCGGAGGGGTAGGTGC  796

seq1  CTTGAGATTCTGGTGCGGCTGAATGGCAGGTTCTCTGGGGATGGGACAAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATTCTGGTGCGGCTGAATGGCAGGTTCTCTGGGGATGGGACAAC  846

seq1  AGAATTGACTGACCAGAAAGTTTAGGTTGGAGAGAAAGGAACATAAATCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGACTGACCAGAAAGTTTAGGTTGGAGAGAAAGGAACATAAATCT  896

seq1  GTAGATGAGGTCAATGGGAGCCATGGCTCGCTAAAGCTCAGGGTGTGCCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGAGGTCAATGGGAGCCATGGCTCGCTAAAGCTCAGGGTGTGCCC  946

seq1  AGCTGCACGGAGGTATTTGTGTGGTGTCCTGGCCAACGAAGCTCATGCTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACGGAGGTATTTGTGTGGTGTCCTGGCCAACGAAGCTCATGCTT  996

seq1  AGTGTGTTCGCCAGGGGTGGAGCTCACCGACCAGGTTTCTGCGTGAGGAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTCGCCAGGGGTGGAGCTCACCGACCAGGTTTCTGCGTGAGGAT  1046

seq1  GAGCAAATGCAGTGTGCACATACATTTGCATGTGTAATCACAGCCTGTGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATGCAGTGTGCACATACATTTGCATGTGTAATCACAGCCTGTGC  1096

seq1  TTCTAAAAATAATCCTTAAAATAACATTCCTTTCCCTCCAATAAACATAC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAATAATCCTTAAAATAACATTCCTTTCCCTCCAATAAACATAC  1146

seq1  TTGGAATTC  1149
      |||||||||
seq2  TTGGAATTC  1155

seq1: chr16_35983035_35983813
seq2: B6Ng01-075K06.g_67_845

seq1  GAATTCTTTGAACGTGAGACACTGACGTATTTTGTAATACTCCCTCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAACGTGAGACACTGACGTATTTTGTAATACTCCCTCAGCC  50

seq1  TCCAACCATGCCATCATTCATCCAATAAGCATGCTCGGCTGTGAGGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCATGCCATCATTCATCCAATAAGCATGCTCGGCTGTGAGGTACC  100

seq1  TACCATGTGAGAGGGAAGCTATATTGATGTGAGGGGGAATCCGTCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTGAGAGGGAAGCTATATTGATGTGAGGGGGAATCCGTCCATTC  150

seq1  TGGAAGAGCTTAGTAAGGACAAGTTTGTTTCCATAACTTCTATATGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGCTTAGTAAGGACAAGTTTGTTTCCATAACTTCTATATGTCTG  200

seq1  CGCTTTTACTGACTGCCAACCTGGTCCGCAGAGACCCACGCCCTGGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTTACTGACTGCCAACCTGGTCCGCAGAGACCCACGCCCTGGCCGC  250

seq1  CGCCTTTTCCCTGGCCGCCGCTAGCCTAGGGCGTCCACGCTCGGAGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTTCCCTGGCCGCCGCTAGCCTAGGGCGTCCACGCTCGGAGACTC  300

seq1  CGCTTCCCGGCAGCCCCTGCGGCAGGCGGCGGAGAAGCGCACGCAGGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCCGGCAGCCCCTGCGGCAGGCGGCGGAGAAGCGCACGCAGGCGC  350

seq1  GCCGGCCGGCCCCCGCACGCAGGCGCAGTGCGCACGCCGGCTGAGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCCGGCCCCCGCACGCAGGCGCAGTGCGCACGCCGGCTGAGCTGGG  400

seq1  TCTCGCGGCTCTGTGAGCGGCAGCGGAGAGCGAGGCCTGGTGAGCGCCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCGGCTCTGTGAGCGGCAGCGGAGAGCGAGGCCTGGTGAGCGCCGC  450

seq1  CGTGGTGCGCGCCGGCTGGTCAAGGTTGTGCGCAGAAGAGGCGCAGCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGCGCGCCGGCTGGTCAAGGTTGTGCGCAGAAGAGGCGCAGCGGG  500

seq1  CGGGCCAAGAGCGAGCGTCTCCCTCTTCGTAGTGGCACCGGGACCGGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCAAGAGCGAGCGTCTCCCTCTTCGTAGTGGCACCGGGACCGGTCG  550

seq1  CCTGGAGCCGGTGAGTGGGGGCACCTCGCGGCCCCTCCCCCTCGGCGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCCGGTGAGTGGGGGCACCTCGCGGCCCCTCCCCCTCGGCGGGC  600

seq1  GGCTCTGGGTCCCCCTCCGCGGACCCGAGGGAGGCCCCGGGGCGAAGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGGTCCCCCTCCGCGGACCCGAGGGAGGCCCCGGGGCGAAGGCG  650

seq1  GACGCGGGCGGAAGCCGGAGCTGGCTCGGGCGCGCCGGGGACCGGACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCGGGCGGAAGCCGGAGCTGGCTCGGGCGCGCCGGGGACCGGACCCT  700

seq1  CGCGTCGCTCCGGTGCGTCACGGGCCCGGCGGTCCTAACGGCCGCGCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCGCTCCGGTGCGTCACGGGCCCGGCGGTCCTAACGGCCGCGCGGC  750

seq1  GGCGGAGCGGGGTGGGGGTGGGGAACGCT  779
      ||||||||||||||||||||||||||| |
seq2  GGCGGAGCGGGGTGGGGGTGGGGAACGTT  779