BAC Information

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BAC

Clone NameB6Ng01-076E06
Chromosome16 (Build37)
Map Location 72,218,156 - 72,219,351
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076E06.bB6Ng01-076E06.g
ACCDH892582DH892583
length1,0021,185
definitionDH892582|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E06, 5' end.DH892583|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcagctagaaaatgaagatttgatctctataatatctgagctt
ttaattaatagtcatcatccccaaattcctgattgggctagaacaaacct
taaaaaaaaagttgggtaacaaaatgtgatggaattgtctcctacttgcc
tgactattctttttatttctgaagagggaaagcatttgtgtcataccagt
tttattatcctggaaaaataaaacctccactttccacaacttgccacata
attattacacataaaatgttattatatatctgaaaagaataatactacag
tcaagcatattttaaatcatcattcctggacctttatgtactgaggacat
taggaaataggtgtctgtcactatctgcagaattgctctaaacataagat
tcacaaaagacagcataacagaataagggctgctgtgaatttgtatataa
ataaattagtcattcttaaagagtggagcagagaccgaaagaaaggccat
ccagagactgccccacctagggatccatcccatctggagacaccaaaccc
agacactattgctgatgccaagaagcgcttgctgacagcagctgcagtat
agctgatccctgagagcctcttctagagcctgacaaatacagaggtggaa
gctcacagccaaccattgaactgatcacagggtccccaatggaggagcta
gagaaaggactgaagaagctgaaggggtttgcaaccccataggaggaaca
acaatatcaaccaaccagtaccgccagagcttccagcaactaaaccataa
attaaagactacatacagagggacccatggctccaggtggatatgaagca
gaggatggccttattgggcaacaataggaggggagtcccttggtcctttg
gacattcactcgtgacccagggtaggggaatgctaggtgttgagcagaac
tgggtgggcgggtggggagcaccctcatagaaacagggaggggaatggga
ta

gaattccacccagtcacagaggccagagatatctctaactagcccttgtg
tgacttgaatggaaaaatgcaagttttccaatatttactaacttttccat
acggctcactcagtatccaaaacatttcccttcttcttctataacaccca
aagtagtgtgagaatagagtctcaggcgttgccacattacatttgaataa
ctctgacggtaatcattctaggcaagggagaacacaagtgttgttccaca
attttacttcaatacaagctccttatttcctcatacacttctactttctt
accaccagatggcgctctgagtctagctagccaataatcacacaaaccac
atttaattgcattttacttacaggagataatctcttcctaaaagttaaga
ttcagtcattccttagaatcccaaacattcactcatttgcacatttttcc
tattaatttctttggcaataaaaggtatgaatgggattcttcacagagct
atttcctagtatagtaataatacctactatgattgttactaacttctatc
atatagaaaacgccaaataatcattatgtattaatagtaattttgtatta
catatataactgaaatttttaccatatttaaagcttggtgctctctatat
catatttaagtcttcagatcagaatgtaaacaatgcaacagttggccgac
ctagaggtaaagatttaagaaccatgattgctaaccataggttcagatct
atttaaaggaggtcaaatctgacgaagaaaaaaataccaggacatgagaa
cattgtcggatcagtggaatggaaagaggctcttcggcaagggagattgc
catggtacaactgaaaagttggctgaaaataccaaagagatcatttgttt
tgttttgttttctagggtcataatcaagaagatgttgaatggatgagagt
gatggacactagaaatattctaggaacgtaaaatgaattgatggaagtgg
gtattagtaaatggcgcaaggacataggcattctttaatgatggcatcac
ttatgttgaaataagccctcttgtggatgaataaagggtaaaaagaaaag
acaacggactcagaatgggaagctgggtatataaaggctctgtagagcga
gaatactgggagcgtgtctttaactagaaagtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72218156_72219351
seq2: B6Ng01-076E06.g_70_1254

seq1  GAATTCCACCCAGTCACAGAGGCCAGAGATATCTCTAACTAGCCCTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCAGTCACAGAGGCCAGAGATATCTCTAACTAGCCCTTGTG  50

seq1  TGACTTGAATGGAAAAATGCAAGTTTTCCAATATTTACTAACTTTTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAATGGAAAAATGCAAGTTTTCCAATATTTACTAACTTTTCCAT  100

seq1  ACGGCTCACTCAGTATCCAAAACATTTCCCTTCTTCTTCTATAACACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTCACTCAGTATCCAAAACATTTCCCTTCTTCTTCTATAACACCCA  150

seq1  AAGTAGTGTGAGAATAGAGTCTCAGGCGTTGCCACATTACATTTGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGTGAGAATAGAGTCTCAGGCGTTGCCACATTACATTTGAATAA  200

seq1  CTCTGACGGTAATCATTCTAGGCAAGGGAGAACACAAGTGTTGTTCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACGGTAATCATTCTAGGCAAGGGAGAACACAAGTGTTGTTCCACA  250

seq1  ATTTTACTTCAATACAAGCTCCTTATTTCCTCATACACTTCTACTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTCAATACAAGCTCCTTATTTCCTCATACACTTCTACTTTCTT  300

seq1  ACCACCAGATGGCGCTCTGAGTCTAGCTAGCCAATAATCACACAAACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGATGGCGCTCTGAGTCTAGCTAGCCAATAATCACACAAACCAC  350

seq1  ATTTAATTGCATTTTACTTACAGGAGATAATCTCTTCCTAAAAGTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTGCATTTTACTTACAGGAGATAATCTCTTCCTAAAAGTTAAGA  400

seq1  TTCAGTCATTCCTTAGAATCCCAAACATTCACTCATTTGCACATTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATTCCTTAGAATCCCAAACATTCACTCATTTGCACATTTTTCC  450

seq1  TATTAATTTCTTTGGCAATAAAAGGTATGAATGGGATTCTTCACAGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTCTTTGGCAATAAAAGGTATGAATGGGATTCTTCACAGAGCT  500

seq1  ATTTCCTAGTATAGTAATAATACCTACTATGATTGTTACTAACTTCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGTATAGTAATAATACCTACTATGATTGTTACTAACTTCTATC  550

seq1  ATATAGAAAACGCCAAATAATCATTATGTATTAATAGTAATTTTGTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAAACGCCAAATAATCATTATGTATTAATAGTAATTTTGTATTA  600

seq1  CATATATAACTGAAATTTTTACCATATTTAAAGCTTGGTGCTCTCTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAACTGAAATTTTTACCATATTTAAAGCTTGGTGCTCTCTATAT  650

seq1  CATATTTAAGTCTTCAGATCAGAATGTAAACAATGCAACAGTTGGCCGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAGTCTTCAGATCAGAATGTAAACAATGCAACAGTTGGCCGAC  700

seq1  CTAGAGGTAAAGATTTAAGAACCATGATTGCTAACCATAGGTTCAGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTAAAGATTTAAGAACCATGATTGCTAACCATAGGTTCAGATCT  750

seq1  ATTTAAAGGAGGTCAAATCTGACGAAGAAAAAAATACCAGGACATGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGAGGTCAAATCTGACGAAGAAAAAAATACCAGGACATGAGAA  800

seq1  CATTGTCGGATCAGTGGAATGGAAAGAGGCTCTTCGGCAAGGGAGATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCGGATCAGTGGAATGGAAAGAGGCTCTTCGGCAAGGGAGATTGC  850

seq1  CATGGTACAACTGAAAAGTTGGCTGAAAATACCAAAGAGATCATTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACAACTGAAAAGTTGGCTGAAAATACCAAAGAGATCATTTGTTT  900

seq1  TGTTTTGTTTTCTAGGGTCATAATCAAGAAGATGTTGAATGGATGAGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTCTAGGGTCATAATCAAGAAGATGTTGAATGGATGAGAGT  950

seq1  GATGGACACTAGGAAATATTCTAGGAACGTAAAATGAATTGATGGAAGTT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GATGGACACTA-GAAATATTCTAGGAACGTAAAATGAATTGATGGAAGT-  998

seq1  GGGTTATTAGTAAATGGCGCAAGGACATAGGCAATTCTGTAATGATGGCA  1050
       || |||||||||||||||||||||||||||| ||||| |||||||||||
seq2  -GGGTATTAGTAAATGGCGCAAGGACATAGGC-ATTCTTTAATGATGGCA  1046

seq1  TCACTTATGTTGAAATAAG-CCTCTGTGT-GATGAATAAAGGGAAACAAG  1098
      ||||||||||||||||||| ||||| ||| ||||||||||||| || |||
seq2  TCACTTATGTTGAAATAAGCCCTCT-TGTGGATGAATAAAGGGTAAAAAG  1095

seq1  -AAAGACAACGGACTCAAGAATGGG-AGCTGGGTTATATAAAAAGGCTCT  1146
       ||||||||||||||| |||||||| |||||||   |||| |||||||| 
seq2  AAAAGACAACGGACTC-AGAATGGGAAGCTGGG---TATATAAAGGCTC-  1140

seq1  TGTAGATAGCGAAGGAATACT--GAGCGTGTCTTTAGACTAAGAAAGGTC  1194
      |||||  |||||  |||||||  ||||||||||||| ||| ||||| |||
seq2  TGTAG--AGCGA--GAATACTGGGAGCGTGTCTTTA-ACT-AGAAA-GTC  1183

seq1  AT  1196
      ||
seq2  AT  1185


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