BAC Information

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BAC

Clone NameB6Ng01-076N14
Chromosome16 (Build37)2 (Build37)
Map Location 50,080,157 - 50,080,399105,605,473 - 105,606,603
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMyh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180
Downstream geneEG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076N14.bB6Ng01-076N14.g
ACCDH892994DH892995
length1,0331,119
definitionDH892994|Mus musculus domesticus DNA, BAC clone: B6Ng01-076N14, 5' end.DH892995|Mus musculus domesticus DNA, BAC clone: B6Ng01-076N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,080,157 - 50,080,399)(105,605,473 - 105,606,603)
sequence
gaattcattgcttttctgttcctgtgatcaaatatgaagcaacctatgga
aggaagcacctgttttgactgtggttccaggaggtttagagtccatcatg
gcaggagaagtggtagcaattgacaagttaagagctcatatcttcaactg
gaagcacagagcagagagggaactggaagtggacagagcttttaatccac
agacctgccccccagtgacacaaatcctccagcaagactgtacccctcaa
ttccccaaacagtaccaccaactgggacccaagtgttgaaatgccagcaa
tatggggacagtttttatttcaaatcacttcactgctgaatcttagcatc
ctacccaaacttgcatgtataggccctgtcttagtcagggtttctattcc
tttacaaacatcatgaccaagaagcaagttggggatgaaagggtttattc
cgcttacacttccatactactgttcatcaccaaaggaagttaggactgga
attcaagcaagtctggaagcaggagctgatgcagaggccatggaaggatg
ttctttactggcttgcttcccctgctctcttacagaactcaagactacca
gcccagagatggtcccacccacaaggcgcctttcccccttgatcactaat
tgagaaaatgccttacagttggatctcatggaggcttttcctcaactgaa
ggtcctttctctgtgataactccagctgtgtcaagttgacacaaaactag
ccagtacaggcccacctctagagatgggggtctttgttgtggtttgaatc
tagaataacctttgttcaattgaaccccagcttatggcactattctgaag
gctatggagcctttatgaagcaaggtctggctggtggaggtaagttatta
ggagcaagcctcagaggtagagccctgattctagccccatggtatacttt
ttgccacccattcctgtcactgtgaacttcaccataccttcccaccacag
tcactgaagttgcccaaaactgaaagatttgta
gaattcaaatgcacccccaccccatccccccatccccagaaaaacttctg
ttttattcacctactcctgttcttgatcccccccctttcttccccctaga
cagggtttctctgtaaagccctggctatcctagaactcactctgaagacc
aggctggcctcaaactcaagagatctgcctgcctttgcctcccaagtact
gagattaaaggcaggcaccaccactgcccagctttgatcctaattcttaa
gcaaagccacagtagagaactggcagccatcactccttactctttcaaaa
taagcaatggggtcaagatgtaaaagataaatggactacttaagacttca
ttgtgcccttgaaataggaacattaagtcttctgagggcttggaggatgg
ctcagtcgattaaagctctttctgagaatcaagagaatcagatttcagat
tcccagatctatataaatgttgagtgaacacatagcttagttgtaattca
gtaagctgcctcctaacaaggctggatcataaaagtgagctctgtgtttg
acagggagactctgcctccaaaagcataaggtagaagagcaactgaggaa
gactcctcacatcaccatggagcattctctctctcacatgtacacgcatg
cagagagagagagagagagagagagagaaagagagagagagaaagagaga
gagggagggagagagagagagagattcagaaatagttctttcaataaaaa
ttatttcaggagccacataacaaggactagaggaaatcactcactactat
tttttctcccagattcaatcatagcattcactgaccacactaatatacct
gattataatttatctttggatttttctttttcctacaatttatgtaaaga
ggttgaaagaaacagtctatatttttctctcaatttaatatgtggagttc
aattaaaaaaaaaagcatccacaaccaacaacaacaaaccagaactgaaa
gtgctagaagaaacaaacagtagtagctatagaggtacagcaggaaagaa
ctttctgaataggactccattgccaaggattaagttcaacaataaatgaa
aggttttttattctttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50080157_50080399
seq2: B6Ng01-076N14.b_559_788

seq1  GGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGCTCTTTACTGGCTT  50
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GGAAGCAGGAGCTGATGCAGAGGCCATGGAAGGATGTTCTTTACTGGCTT  50

seq1  GCTTCCCCTAGCTTGCTCAGCCTGCTCTCTTACAGAACCCAAGACTACCA  100
      ||||||              |||||||||||||||||| |||||||||||
seq2  GCTTCC--------------CCTGCTCTCTTACAGAACTCAAGACTACCA  86

seq1  GCCCACAGATGGTCCCACCCACAAGGGGCCTTT-CCCCTTGATCACTAAT  149
      ||||| |||||||||||||||||||| |||||| ||||||||||||||||
seq2  GCCCAGAGATGGTCCCACCCACAAGGCGCCTTTCCCCCTTGATCACTAAT  136

seq1  TGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAA  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCTTTTCCTCAACTGAA  186

seq1  GCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAA  243
      | ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAA  230

seq1: chr2_105605473_105606603
seq2: B6Ng01-076N14.g_68_1186

seq1  GAATTCAAATGCACCCCCACCCCATCCCCCCATCCCCAGAAAAACTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCACCCCCACCCCATCCCCCCATCCCCAGAAAAACTTCTG  50

seq1  TTTTATTCACCTACTCCTGTTCTTGATCCCCCCCCTTTCTTCCCCCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCACCTACTCCTGTTCTTGATCCCCCCCCTTTCTTCCCCCTAGA  100

seq1  CAGGGTTTCTCTGTAAAGCCCTGGCTATCCTAGAACTCACTCTGAAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTAAAGCCCTGGCTATCCTAGAACTCACTCTGAAGACC  150

seq1  AGGCTGGCCTCAAACTCAAGAGATCTGCCTGCCTTTGCCTCCCAAGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCAAACTCAAGAGATCTGCCTGCCTTTGCCTCCCAAGTACT  200

seq1  GAGATTAAAGGCAGGCACCACCACTGCCCAGCTTTGATCCTAATTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAAGGCAGGCACCACCACTGCCCAGCTTTGATCCTAATTCTTAA  250

seq1  GCAAAGCCACAGTAGAGAACTGGCAGCCATCACTCCTTACTCTTTCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCACAGTAGAGAACTGGCAGCCATCACTCCTTACTCTTTCAAAA  300

seq1  TAAGCAATGGGGTCAAGATGTAAAAGATAAATGGACTACTTAAGACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATGGGGTCAAGATGTAAAAGATAAATGGACTACTTAAGACTTCA  350

seq1  TTGTGCCCTTGAAATAGGAACATTAAGTCTTCTGAGGGCTTGGAGGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCTTGAAATAGGAACATTAAGTCTTCTGAGGGCTTGGAGGATGG  400

seq1  CTCAGTCGATTAAAGCTCTTTCTGAGAATCAAGAGAATCAGATTTCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCGATTAAAGCTCTTTCTGAGAATCAAGAGAATCAGATTTCAGAT  450

seq1  TCCCAGATCTATATAAATGTTGAGTGAACACATAGCTTAGTTGTAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATCTATATAAATGTTGAGTGAACACATAGCTTAGTTGTAATTCA  500

seq1  GTAAGCTGCCTCCTAACAAGGCTGGATCATAAAAGTGAGCTCTGTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGCCTCCTAACAAGGCTGGATCATAAAAGTGAGCTCTGTGTTTG  550

seq1  ACAGGGAGACTCTGCCTCCAAAAGCATAAGGTAGAAGAGCAACTGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGACTCTGCCTCCAAAAGCATAAGGTAGAAGAGCAACTGAGGAA  600

seq1  GACTCCTCACATCACCATGGAGCATTCTCTCTCTCACATGTACACGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCACATCACCATGGAGCATTCTCTCTCTCACATGTACACGCATG  650

seq1  CAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGA  700

seq1  GAGGGAGGGAGAGAGAGAGAGAGATTCAGAAATAGTTCTTTCAATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGAGAGAGAGAGAGAGATTCAGAAATAGTTCTTTCAATAAAAA  750

seq1  TTATTTCAGGAGCCACATAACAAGGACTAGAGGAAATCACTCACTACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGGAGCCACATAACAAGGACTAGAGGAAATCACTCACTACTAT  800

seq1  TTTTTCTCCCAGATTCAATCATAGCATTCACTGACCACACTAATATACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCCAGATTCAATCATAGCATTCACTGACCACACTAATATACCT  850

seq1  GATTATAATTTATCTTTGGATTTTTCTTTTTCCTACAATTTATGTAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAATTTATCTTTGGATTTTTCTTTTTCCTACAATTTATGTAAAGA  900

seq1  GGTTGAAAGAAACAGTCTATATTTTTCTCTCCAATTTAAATAATGTGGAG  950
      |||||||||||||||||||||||||||||| ||||||||   ||||||||
seq2  GGTTGAAAGAAACAGTCTATATTTTTCTCT-CAATTTAA--TATGTGGAG  947

seq1  TTCAATTAAAAAAAAAAGCAATCCACAAACCAAACAACAAACAAACCAGG  1000
      ||||||||||||||||||| ||||||||  | |||||| ||||||||| |
seq2  TTCAATTAAAAAAAAAAGC-ATCCACAA--CCAACAAC-AACAAACCA-G  992

seq1  AACTGAAAGTGCTAGAAGAAAACAAACAGTAGGTAGCCTATAAGATGTAA  1050
      |||||||||||||||||| |||||||||||| |||| |||| ||| || |
seq2  AACTGAAAGTGCTAGAAG-AAACAAACAGTA-GTAG-CTAT-AGAGGT-A  1037

seq1  CAGCAGGAAAGAACTTTCTGAATAGGACTCCATTTGCCAAGGAATTAAGG  1100
      |||||||||||||||||||||||||||||||| ||||||||| |||||| 
seq2  CAGCAGGAAAGAACTTTCTGAATAGGACTCCA-TTGCCAAGG-ATTAAGT  1085

seq1  TCAACAATAAAATGAAAAGTTTTTT----TTTTTT  1131
      |||||||| |||||||| |||||||    ||||||
seq2  TCAACAAT-AAATGAAAGGTTTTTTATTCTTTTTT  1119