BAC Information

Click to search

BAC

Clone NameB6Ng01-077B17
Chromosome16 (Build37)
Map Location 45,226,848 - 45,227,966
singlet/doubletsinglet
Overlap geneBtla
Upstream geneSidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267
Downstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B17.bB6Ng01-077B17.g
ACCDH893169DH893170
length1,1151,205
definitionDH893169|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B17, 5' end.DH893170|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttacaacactatattttcaacttatttaaggatggtttaacaa
tatttcccaccgttatagtaatatgaaattctaaggaggtgggtttttgt
gtttctcaagagtggggaaatacagagaaaaactcccctagtttcaagac
catcatttctctcctgattgaagtagagtagaaatcactgctcctcagga
cgcctgaaagatgaaaatcaagttgagctggtaggtctcgttaacatttt
ttgccttttccctaattgccatgttcatctaatgaacaacctggagttca
catccatcacaaatagtccacagttcccaagtcatcagtaggagaaaccg
aggtgttcagctctgagctggatgggagtggctcacttcattttcatttg
tgatactagaaaaggaaagtggacactggggaacaatgggtggattttta
accacagagacagagtcaactatatctggggcttgagatccagtgtcaag
tctgccatctctgtagcagactgtattggggatgtgagaaaatcagttga
agggaagtgaaagtggacttccctgcacctttctttctctttttcttttt
tctttcttttttttcccttattagatattttctttatttacatttcaaat
gttatccccttttctagtttcccctctgaaaataccctatcccctccctc
ctccccctgctcatcaacccacccactcctgatgctgcttcttagccctg
gcattcccctacactgaagcatagagcctacacaggaccaagggcctctc
ctcccattgatgaccgtctaggccatcctctgctacatatgcagctagag
ccaaaagtcccaccatgtgtactctttggttggtggtttagtcccaggga
gctctgggggtactggttagttcatattgttgttcctcctatgccctgca
cccttctgacttaacatactcttactgaacatcacaaggaaacactcttg
acacttaggaaaactcatgctggtttctgaaagaatgtgagagcagctca
ccagttctactgccaacagctgttaagctggctttcccttctgaagcttt
gtgatcgagtagaga
gaattcccatcaaaattccaacacaatttttttcagaccttggcagaaca
attttcaactttataaaaaaaacaaaagccacaggataactaaaacaatc
ctgtatgataaaagaacttctggatgtatcactattactgatttcaaact
atactagagagtaatagtcataaaacctgcatggttttggcataaaaaca
gtcaggttgatcaactgaatagaatcaaagacccagaaataaacccacac
acctatggacacatgattttttacaaagaagccaaaacccacacaatgga
aaaatgaaagcatcttcaacaaatggtgctggtctaaattgatgtctgca
tttagaagaatgcagatagactcatatccataactttgcacaaaactcaa
gtccaagtggattgaagacctcaatataatgccagacacacaaaatctag
tagaagagaaagtagggaactgccttgaatttttggcacaggagataaat
tcctgaacagaacaccaatagctcaggaactaagattaacagttaattaa
tggaacttcatgaaactaaaaaggtttttcgaggctaaggacaccatcaa
taggacaaaatcatagcctacatagtgggaaaagatcttcactaaccctg
catcacatggaggactaatatgcaaaatgtataaagaactcaaggaatta
gataccaacaaaccaaagaaccaaattttaaagtggggtaagatctaaac
agagaattctaaacagaacaatttctaatggacaagaatcacctaaaaaa
atctttaatatccttagtcatcagagagatgcaaataaaaatgactctaa
tattccatccccacagaatagcaaaagagcaaaaattcaagtggtggaac
acattggcaaggatttggagcaagggaacccatttctgctgggtgtgcaa
acttctacatcacttttgaaatcacttgacattatcagaaactgggaatc
attctacccagactcagctatactatctggcatataccctaagatgctac
tatacacaaagacatttgctcactatgttcatagcagcttattcataata
gcagaactggaaaccctctgattcatcaactgggatatggtaaagagtgt
taactttcacatgtactattcagctttaaaacaagaccattctggaagag
actcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45226848_45227966
seq2: B6Ng01-077B17.b_43_1157

seq1  GAATTCTTTACAACACTATATTTTCAACTTATTTAAGGATGGTTTAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAACACTATATTTTCAACTTATTTAAGGATGGTTTAACAA  50

seq1  TATTTCCCACCGTTATAGTAATATGAAATTCTAAGGAGGTGGGTTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCACCGTTATAGTAATATGAAATTCTAAGGAGGTGGGTTTTTGT  100

seq1  GTTTCTCAAGAGTGGGGAAATACAGAGAAAAACTCCCCTAGTTTCAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAAGAGTGGGGAAATACAGAGAAAAACTCCCCTAGTTTCAAGAC  150

seq1  CATCATTTCTCTCCTGATTGAAGTAGAGTAGAAATCACTGCTCCTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTCTCTCCTGATTGAAGTAGAGTAGAAATCACTGCTCCTCAGGA  200

seq1  CGCCTGAAAGATGAAAATCAAGTTGAGCTGGTAGGTCTCGTTAACATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGAAAGATGAAAATCAAGTTGAGCTGGTAGGTCTCGTTAACATTTT  250

seq1  TTGCCTTTTCCCTAATTGCCATGTTCATCTAATGAACAACCTGGAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTTCCCTAATTGCCATGTTCATCTAATGAACAACCTGGAGTTCA  300

seq1  CATCCATCACAAATAGTCCACAGTTCCCAAGTCATCAGTAGGAGAAACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCACAAATAGTCCACAGTTCCCAAGTCATCAGTAGGAGAAACCG  350

seq1  AGGTGTTCAGCTCTGAGCTGGATGGGAGTGGCTCACTTCATTTTCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCAGCTCTGAGCTGGATGGGAGTGGCTCACTTCATTTTCATTTG  400

seq1  TGATACTAGAAAAGGAAAGTGGACACTGGGGAACAATGGGTGGATTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTAGAAAAGGAAAGTGGACACTGGGGAACAATGGGTGGATTTTTA  450

seq1  ACCACAGAGACAGAGTCAACTATATCTGGGGCTTGAGATCCAGTGTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGACAGAGTCAACTATATCTGGGGCTTGAGATCCAGTGTCAAG  500

seq1  TCTGCCATCTCTGTAGCAGACTGTATTGGGGATGTGAGAAAATCAGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATCTCTGTAGCAGACTGTATTGGGGATGTGAGAAAATCAGTTGA  550

seq1  AGGGAAGTGAAAGTGGACTTCCCTGCACCTTTCTTTCTCTTTTTCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGAAAGTGGACTTCCCTGCACCTTTCTTTCTCTTTTTCTTTTT  600

seq1  TCTTTCTTTTTTTTCCCTTATTAGATATTTTCTTTATTTACATTTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTTTTCCCTTATTAGATATTTTCTTTATTTACATTTCAAAT  650

seq1  GTTATCCCCTTTTCTAGTTTCCCCTCTGAAAATACCCTATCCCCTCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCCTTTTCTAGTTTCCCCTCTGAAAATACCCTATCCCCTCCCTC  700

seq1  CTCCCCCTGCTCATCAACCCACCCACTCCTGATGCTGCTTCTTAGCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTGCTCATCAACCCACCCACTCCTGATGCTGCTTCTTAGCCCTG  750

seq1  GCATTCCCCTACACTGAAGCATAGAGCCTACACAGGACCAAGGGCCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCCTACACTGAAGCATAGAGCCTACACAGGACCAAGGGCCTCTC  800

seq1  CTCCCATTGATGACCGTCTAGGCCATCCTCTGCTACATATGCAGCTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGATGACCGTCTAGGCCATCCTCTGCTACATATGCAGCTAGAG  850

seq1  CCAAAAGTCCCACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTCCCACCATGTGTACTCTTTGGTTGGTGGTTTAGTCCCAGGGA  900

seq1  GCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATGCCCTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATGCCCTGCA  950

seq1  CCCTTCTGACTTAACATACTCTTACTGAACATCACAAGGAAACACCTCTT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCTTCTGACTTAACATACTCTTACTGAACATCACAAGGAAACA-CTCTT  999

seq1  GACACTTAGGAAAACTCATGCTGGTTTCTGATAGAATGTGAGAGCAGCTC  1050
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACACTTAGGAAAACTCATGCTGGTTTCTGAAAGAATGTGAGAGCAGCTC  1049

seq1  ACCAGTTCTACTGCCAACAGCTGTTAAGGCTGGCTTCCCTTCCTGAAAGC  1100
      ||||||||||||||||||||||||||| |||||||| || | ||| ||||
seq2  ACCAGTTCTACTGCCAACAGCTGTTAA-GCTGGCTTTCCCTTCTG-AAGC  1097

seq1  TTTGTGATCGAGGTAGAGA  1119
      ||||||||||| |||||||
seq2  TTTGTGATCGA-GTAGAGA  1115