BAC Information

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BAC

Clone NameB6Ng01-077P06
Chromosome16 (Build37)
Map Location 62,320,424 - 62,459,388
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077P06.bB6Ng01-077P06.g
ACCDH893789DH893790
length1,0901,143
definitionDH893789|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P06, 5' end.DH893790|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,320,424 - 62,321,528)(62,458,226 - 62,459,388)
sequence
gaattcattgacatattttgtgaccgagtgtagtttcctcctgccttggc
tggagctatctttggtttaacctgaaagtgcctcccttttctacccctcc
catgaaaagttggttttttttttttttttttttttttttttgaaaattat
ctaagcctgttatagaaacttaggatggaaataccccagctaactgccgt
tcttttgacttctgttaaaatgcttccttgccttacttcccctccaacaa
caaccaagatgtagtttttctgtgttctttgcctttacaagctctgtgta
tgggctggagagatagctcagctattgaaggctaggctcgcaactaaaaa
tataaaatctccatgaaaatgcattaaaggctgctctctgagaagtattt
ctcaccaggcagtctctgttaggcttaatacaaactctcagtccatactt
tgctcatgctggatgttctttgtgtatctatcctgcaacactttgaattc
atgcctttcccactcagttcccaagtagaaacttacagcactgctttaga
gttatgaaatcacctgcctttttccatccatgttgcagcagaatttttct
tactttatatatttctcccttcttcacactccacggagtatttacagtgt
gtctgcactttgctctctctagagctgtctcactcaattgccgaagcttc
tcccttacaccatgtaacaagtcctttgtgtcacacttggatcctttctt
tctgaattacaatttgcctctttatgatgcttgtatgcattctgacatga
cagactttcctttttattttattttattttttattcttggtttctgtatg
gatttctcctgcctttgtaccaaggcagcactttttagcccatttactgt
gaaaggtagatgactgcctgtctctctccaaaccccctctgcacttttct
tctaccttcctaacttgccttctcagtcattatttctcagaaaacatttc
tctcactgcctttttttcaaataatgaaggagctactactttcaataagg
cagaatgatttagagcagggatggcttgcagaacatcagc
gaattcaattgtcatgtacgcctccaggggaatcctgtcaactagggaag
attaacacatgggagcagaggccccatctacagacaggctgtgagagaac
attgcctgttctgatggcttcttttgggacaggttttattacctgagaga
ttatatctgcataagtagatgatctttccttattgcaaatttccacccat
cctccgcagaataaaaacagtgtgaattcctaactgataccaataaatgg
cttgtacttactagtgaaaaacaaacaaaacaaacacacaaataaaccaa
atacttcaatttatgggctaagaatatggctcaatggtaggacacttatg
tagtacacagaaacctctgggtttaatttcagcttggcaggcaaacccca
catggcaactaacactttggtaatttggctctggttccagtcatatttac
gcacacgtttatgataaagatgcactccttccatccttccatagcaacat
gtcaattggctgtctatttttagactcaattattggaccttcagaaataa
ttttcttttctctacattcccaaattggagtccaacatatgatagggatc
cagtgaacgtgtattaaattgaagacatcaagagatcaatgtatgtggaa
gaattatgaataaccacaaattaataagcaggaaagtaccattgaggaca
ctctctcactctctcttttttttcttcttaactgaagaccattgacgtat
aaaggtctatgcaatgtccacatgctagttaccacacatgattcagtttt
tttctgaaaattaggtaggtgagaacacctaaaaaatgaaaaggatattt
tattaggatttatcagttttgtgtcctagaatgcctttgaaacaaagaga
aatagaagtggatactgtagattctggtaggggttttttgtttgtttgtt
gttttgttttgttttgcacaaccaaatttgatgatgactcagatgaggat
gctgtggtgaggacttgactgttgtagagtttctgtgattaatggtttat
gttagcataacttgtagataattagtatcccagccgatagaaatacctta
atcaggcaatgctttccatccgaagggagaaggtgcatttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62320424_62321528
seq2: B6Ng01-077P06.b_47_1136

seq1  GAATTCATTGACATATTTTGTGACCGAGTGTAGTTTCCTCCTGCCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGACATATTTTGTGACCGAGTGTAGTTTCCTCCTGCCTTGGC  50

seq1  TGGAGCTATCTTTGGTTTAACCTGAAAGTGCCTCCCTTTTCTACCCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTATCTTTGGTTTAACCTGAAAGTGCCTCCCTTTTCTACCCCTCC  100

seq1  CATGAAAAGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTAT  150

seq1  CTAAGCCTGTTATAGAAACTTAGGATGGAAATACCCCAGCTAACTGCCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTGTTATAGAAACTTAGGATGGAAATACCCCAGCTAACTGCCGT  200

seq1  TCTTTTGACTTCTGTTAAAATGCTTCCTTGCCTTACTTCCCCTCCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGACTTCTGTTAAAATGCTTCCTTGCCTTACTTCCCCTCCAACAA  250

seq1  CAACCAAGATGTAGTTTTTCTGTGTTCTTTGCCTTTACAAGCTCTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGATGTAGTTTTTCTGTGTTCTTTGCCTTTACAAGCTCTGTGTA  300

seq1  TGGGCTGGAGAGATAGCTCAGCTATTGAAGGCTAGGCTCGCAACTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGAGAGATAGCTCAGCTATTGAAGGCTAGGCTCGCAACTAAAAA  350

seq1  TATAAAATCTCCATGAAAATGCATTAAAGGCTGCTCTCTGAGAAGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCTCCATGAAAATGCATTAAAGGCTGCTCTCTGAGAAGTATTT  400

seq1  CTCACCAGGCAGTCTCTGTTAGGCTTAATACAAACTCTCAGTCCATACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGGCAGTCTCTGTTAGGCTTAATACAAACTCTCAGTCCATACTT  450

seq1  TGCTCATGCTGGATGTTCTTTGTGTATCTATCCTGCAACACTTTGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGCTGGATGTTCTTTGTGTATCTATCCTGCAACACTTTGAATTC  500

seq1  ATGCCTTTCCCACTCAGTTCCCAAGTAGAAACTTACAGCACTGCTTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTCCCACTCAGTTCCCAAGTAGAAACTTACAGCACTGCTTTAGA  550

seq1  GTTATGAAATCACCTGCCTTTTTCCATCCATGTTGCAGCAGAATTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAATCACCTGCCTTTTTCCATCCATGTTGCAGCAGAATTTTTCT  600

seq1  TACTTTATATATTTCTCCCTTCTTCACACTCCACGGAGTATTTACAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATATATTTCTCCCTTCTTCACACTCCACGGAGTATTTACAGTGT  650

seq1  GTCTGCACTTTGCTCTCTCTAGAGCTGTCTCACTCAATTGCCGAAGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACTTTGCTCTCTCTAGAGCTGTCTCACTCAATTGCCGAAGCTTC  700

seq1  TCCCTTACACCATGTAACAAGTCCTTTGTGTCACACTTGGATCCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTACACCATGTAACAAGTCCTTTGTGTCACACTTGGATCCTTTCTT  750

seq1  TCTGAATTACAATTTGCCTCTTTATGATGCTTGTATGCATTCTGACATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTACAATTTGCCTCTTTATGATGCTTGTATGCATTCTGACATGA  800

seq1  CAGACTTTCCTTTTTATTTTATTTTATTTTTTATTCTTGGTTTCTGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTCCTTTTTATTTTATTTTATTTTTTATTCTTGGTTTCTGTATG  850

seq1  GATTTCTCCTGCCTTTGTACCAAGGCAGCACTTTTTAGCCCATTTACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCCTGCCTTTGTACCAAGGCAGCACTTTTTAGCCCATTTACTGT  900

seq1  GAAAGGTAGATGACTGCCTGTCTCCTCTCCCAAAACCCCCTCTGCACTTT  950
      ||||||||||||||||||||||| ||||||  ||||||||||||||||||
seq2  GAAAGGTAGATGACTGCCTGTCT-CTCTCC--AAACCCCCTCTGCACTTT  947

seq1  TCCTTCTACCTTCCTAACTTGCCCTCTCAGGTCATTAATTTCTCAGAAAA  1000
      | ||||||||||||||||||||| ||||| |||||| |||||||||||||
seq2  T-CTTCTACCTTCCTAACTTGCCTTCTCA-GTCATT-ATTTCTCAGAAAA  994

seq1  CATTTCTCTCACTTGCTTTTTTTCACATAATGAAAGAAGCTACTTACTTT  1050
      |||||||||||||  |||||||||| |||||| ||| |||||| ||||||
seq2  CATTTCTCTCACTGCCTTTTTTTCAAATAATG-AAGGAGCTAC-TACTTT  1042

seq1  CAAATAAAGCAGAATGATTTTAGAGCAAGGGAATGGCTTTGCAGGCACCA  1100
      | ||||| ||||||||| |||||||||  || ||||| ||||||  | ||
seq2  C-AATAAGGCAGAATGA-TTTAGAGCA--GGGATGGC-TTGCAG--AACA  1085

seq1  TCAGC  1105
      |||||
seq2  TCAGC  1090

seq1: chr16_62458226_62459388
seq2: B6Ng01-077P06.g_70_1212 (reverse)

seq1  ATGAAATGCACTTTCTTCCCTCTGAATGAAAGCATTGCCCTGGATTACAG  50
      ||||||||||| |||| || || ||  ||||||||||||   |||||  |
seq2  ATGAAATGCACCTTCTCCCTTCGGATGGAAAGCATTGCC--TGATTAAGG  48

seq1  TTATTCTATTCTGCTGTGGATACTAATTAATCTACAAGTTAATGGCTTAA  100
      |  ||||| || |||| ||||||||||| ||||||||||| |||   |||
seq2  TATTTCTA-TCGGCTG-GGATACTAATT-ATCTACAAGTT-ATG--CTAA  92

seq1  CATTAACCATTTAATCAACAGAAGACTTCTTAACAACAGTCAAGTCCTCA  150
      ||| ||||| |||||| |||||| || |||  ||||||||||||||||||
seq2  CATAAACCA-TTAATC-ACAGAA-AC-TCT--ACAACAGTCAAGTCCTCA  136

seq1  CCACAGCATCCTCATCTGAGTCATCAATCAAATTTGGTTGTTGCAAAAAC  200
      ||||||||||||||||||||||||| |||||||||||||| ||| |||||
seq2  CCACAGCATCCTCATCTGAGTCATC-ATCAAATTTGGTTG-TGC-AAAAC  183

seq1  AAAACAAAACAAACAAACAAACAAAAAACCCCTACCAGAATCTACAGTAT  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAC-AACAAACAAACAAAAAACCCCTACCAGAATCTACAGTAT  232

seq1  CCACTTCTATTTTCTCTTTGTTTCAAAGGCATTTCTAGGACACAAAACTG  300
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CCACTTCTA-TTTCTCTTTGTTTCAAAGGCA-TTCTAGGACACAAAACTG  280

seq1  ATAAATCCTAATAAAATATCCTTTTCATTTTTTAGGTGTTCTCACCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTAATAAAATATCCTTTTCATTTTTTAGGTGTTCTCACCTACC  330

seq1  TAATTTTCAGAAAAAAACTGAATCATGTGTGGTAACTAGCATGTGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAGAAAAAAACTGAATCATGTGTGGTAACTAGCATGTGGACAT  380

seq1  TGCATAGACCTTTATACGTCAATGGTCTTCAGTTAAGAAGAAAAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGACCTTTATACGTCAATGGTCTTCAGTTAAGAAGAAAAAAAAGA  430

seq1  GAGAGTGAGAGAGTGTCCTCAATGGTACTTTCCTGCTTATTAATTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGAGAGTGTCCTCAATGGTACTTTCCTGCTTATTAATTTGTGG  480

seq1  TTATTCATAATTCTTCCACATACATTGATCTCTTGATGTCTTCAATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATAATTCTTCCACATACATTGATCTCTTGATGTCTTCAATTTAA  530

seq1  TACACGTTCACTGGATCCCTATCATATGTTGGACTCCAATTTGGGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTTCACTGGATCCCTATCATATGTTGGACTCCAATTTGGGAATGT  580

seq1  AGAGAAAAGAAAATTATTTCTGAAGGTCCAATAATTGAGTCTAAAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGAAAATTATTTCTGAAGGTCCAATAATTGAGTCTAAAAATAG  630

seq1  ACAGCCAATTGACATGTTGCTATGGAAGGATGGAAGGAGTGCATCTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAATTGACATGTTGCTATGGAAGGATGGAAGGAGTGCATCTTTAT  680

seq1  CATAAACGTGTGCGTAAATATGACTGGAACCAGAGCCAAATTACCAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACGTGTGCGTAAATATGACTGGAACCAGAGCCAAATTACCAAAGT  730

seq1  GTTAGTTGCCATGTGGGGTTTGCCTGCCAAGCTGAAATTAAACCCAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGCCATGTGGGGTTTGCCTGCCAAGCTGAAATTAAACCCAGAGG  780

seq1  TTTCTGTGTACTACATAAGTGTCCTACCATTGAGCCATATTCTTAGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTACTACATAAGTGTCCTACCATTGAGCCATATTCTTAGCCCA  830

seq1  TAAATTGAAGTATTTGGTTTATTTGTGTGTTTGTTTTGTTTGTTTTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAGTATTTGGTTTATTTGTGTGTTTGTTTTGTTTGTTTTTCAC  880

seq1  TAGTAAGTACAAGCCATTTATTGGTATCAGTTAGGAATTCACACTGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTACAAGCCATTTATTGGTATCAGTTAGGAATTCACACTGTTTT  930

seq1  TATTCTGCGGAGGATGGGTGGAAATTTGCAATAAGGAAAGATCATCTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCGGAGGATGGGTGGAAATTTGCAATAAGGAAAGATCATCTACT  980

seq1  TATGCAGATATAATCTCTCAGGTAATAAAACCTGTCCCAAAAGAAGCCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGATATAATCTCTCAGGTAATAAAACCTGTCCCAAAAGAAGCCAT  1030

seq1  CAGAACAGGCAATGTTCTCTCACAGCCTGTCTGTAGATGGGGCCTCTGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGGCAATGTTCTCTCACAGCCTGTCTGTAGATGGGGCCTCTGCT  1080

seq1  CCCATGTGTTAATCTTCCCTAGTTGACAGGATTCCCCTGGAGGCGTACAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTTAATCTTCCCTAGTTGACAGGATTCCCCTGGAGGCGTACAT  1130

seq1  GACAATTGAATTC  1163
      |||||||||||||
seq2  GACAATTGAATTC  1143