BAC Information

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BAC

Clone NameB6Ng01-078F10
Chromosome16 (Build37)
Map Location 84,164,797 - 84,273,788
singlet/doubletdoublet
Overlap geneEG621729, LOC640489
Upstream geneEG545172, LOC100039572
Downstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F10.bB6Ng01-078F10.g
ACCDH894062DH894063
length1,1531,108
definitionDH894062|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F10, 5' end.DH894063|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,164,797 - 84,165,986)(84,272,672 - 84,273,788)
sequence
gaattcagcatctggaagaggattagaccaacagtattggaaaggaaact
ccccagatttgttgagaggctgtgaagcatgctccaggttctgagcttat
gtcgacctcacccatactaaattggactttggtgatacagccgtctttga
gtcatttctgctacaacaatcaactgctatctcatattcctgaaaataat
cctaataaaactcattggacatcagcagaactcataatttggtctacttg
tgggccccctatctaggatgagtagatgtgtgtgttgcatagccccaggg
gaaaaaaaatcttttcccacaacacagtatagaccattgctaaggaagca
gttgcattcagccattccttgtctagactgcaacataaatacaagtttgt
aaaaagcaattgttcagccaggcggtggtggcgcatgcctttaatcccag
cacttgggaggcagaggcaggcagatttctgacttcgagaccagcctggt
ctacaaagtgaatgccaggacagccagagctacatagggaaaccctgtct
cgaaaaaaaaaaaaaaaagaaagcaattgttcttttccacaaatctctgt
gttgttgacaggacaggtgcccacaggggcctaagaaaggataagagttt
gtgaagccaaatcaatttgccctgatcatttcaagtaaagccatcccagt
cataatccctcaaataattactaaaaatgtgaatgacccaagtcaaggcc
aagagttatagcctgacctaatagtcaacagacaaaaattagctgactgt
actgtaatagaattttggtattatatataacaataaatgacctattctgc
tacaaagactagtacagggctcactcttattaacttctactattgcaaaa
taacctgtcatcaataatcttcagctaattcgcccttcccaacacacttt
tctaacgccatgctcctacccagctggagatcatctgcatttcaatagtt
aatgagttgtccctttcaaactttgagtaatgtacggcttctcaaatcat
caaatgctaactcaaactatggtttctgaaagcagtctcaagtgcatatg
tactttctcatcgagtctcttcccactctaacagatggatgtgcatctta
tgg
gaattcctggctatgctgtctctctcttgatggtacatcattcagaatgt
ttgcagaatatgaggctgcaccagggatatcgacaatcttagatgttcag
agtgatgggagcatctctgtaaagcaaaatgaaaaaaagaaaagaaaggg
gaaagcaagacagtctgaagatgtttggctctttagctgggttatagagg
attggctcacgtggtcatgctgagcaaccacaaagttgtagagtctttat
tctccgttgtcttaaaggacaatttggggttggtttctttactcagtaaa
gtaattgccccacaagtgtgagacccagagtttggatcttgagcaagcac
aaatgctggatgtggaggcagtttttatgcttgatttgaaatcatgtttt
ctattccatagtttattgaatgaatgtctcatttactgccatgaatttca
actatgtgtattatacatgacactgagataaattttttatgtgtcagcat
tttatattagtctatattcaccacaaaatacatagtatacattgtgaaaa
ctcatgttttctagttatcattgataaattttcagtatgattattatggt
attttctaaagttcatcattttcagtataaaattaaattcaattacattt
atttatcaaattaaaaatgaatgtaaatattatatgacttgtaatgactt
tacatcaatattttcatttaataagattgctctacatatctacaaccata
taaagcattcaatcattaggttatatgtttttagatactacatattagta
ttaatgaaaattgttttaaaagctagccacagtgtagttcgtctcagatt
aggtcccttttgaaaatcaattcctgcaaaaattgtgtgaacaggactat
gtagctcattagagtcaagtgtggattgtagaaatcacaccacaggaatg
gagggcaattagatcattgcgttagtaaatgatgaaagacacattctgca
tttttagtggaatatagagtccagtggtgtgtggcgagacttgcaacacc
agggaggagactattcagattgcagtgttacaaggagagaaacaggccag
ggtgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_84164797_84165986
seq2: B6Ng01-078F10.b_45_1197

seq1  GAATTCAGCATCTGGAAGAGGATTAGACCAACAGTATTGGAAAGGAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCTGGAAGAGGATTAGACCAACAGTATTGGAAAGGAAACT  50

seq1  CCCCAGATTTGTTGAGAGGCTGTGAAGCATGCTCCAGGTTCTGAGCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATTTGTTGAGAGGCTGTGAAGCATGCTCCAGGTTCTGAGCTTAT  100

seq1  GTCGACCTCACCCATACTAAATTGGACTTTGGTGATACAGCCGTCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGACCTCACCCATACTAAATTGGACTTTGGTGATACAGCCGTCTTTGA  150

seq1  GTCATTTCTGCTACAACAATCAACTGCTATCTCATATTCCTGAAAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTGCTACAACAATCAACTGCTATCTCATATTCCTGAAAATAAT  200

seq1  CCTAATAAAACTCATTGGACATCAGCAGAACTCATAATTTGGTCTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAAACTCATTGGACATCAGCAGAACTCATAATTTGGTCTACTTG  250

seq1  TGGGCCCCCTATCTAGGATGAGTAGATGTGTGTGTTGCATAGCCCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCCTATCTAGGATGAGTAGATGTGTGTGTTGCATAGCCCCAGGG  300

seq1  GAAAAAAAATCTTTTCCCACAACACAGTATAGACCATTGCTAAGGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATCTTTTCCCACAACACAGTATAGACCATTGCTAAGGAAGCA  350

seq1  GTTGCATTCAGCCATTCCTTGTCTAGACTGCAACATAAATACAAGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTCAGCCATTCCTTGTCTAGACTGCAACATAAATACAAGTTTGT  400

seq1  AAAAAGCAATTGTTCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAATTGTTCAGCCAGGCGGTGGTGGCGCATGCCTTTAATCCCAG  450

seq1  CACTTGGGAGGCAGAGGCAGGCAGATTTCTGACTTCGAGACCAGCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCAGAGGCAGGCAGATTTCTGACTTCGAGACCAGCCTGGT  500

seq1  CTACAAAGTGAATGCCAGGACAGCCAGAGCTACATAGGGAAACCCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAATGCCAGGACAGCCAGAGCTACATAGGGAAACCCTGTCT  550

seq1  CGAAAAAAAAAAAAAAAAGAAAGCAATTGTTCTTTTCCACAAATCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAAAAAAAAAAAGAAAGCAATTGTTCTTTTCCACAAATCTCTGT  600

seq1  GTTGTTGACAGGACAGGTGCCCACAGGGGCCTAAGAAAGGATAAGAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGACAGGACAGGTGCCCACAGGGGCCTAAGAAAGGATAAGAGTTT  650

seq1  GTGAAGCCAAATCAATTTGCCCTGATCATTTCAAGTAAAGCCATCCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCCAAATCAATTTGCCCTGATCATTTCAAGTAAAGCCATCCCAGT  700

seq1  CATAATCCCTCAAATAATTACTAAAAATGTGAATGACCCAAGTCAAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCCCTCAAATAATTACTAAAAATGTGAATGACCCAAGTCAAGGCC  750

seq1  AAGAGTTATAGCCTGACCTAATAGTCAACAGACAAAAATTAGCTGACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTATAGCCTGACCTAATAGTCAACAGACAAAAATTAGCTGACTGT  800

seq1  ACTGTAATAGAATTTTGGTATTATATATAACAATAAATGACCTATTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATAGAATTTTGGTATTATATATAACAATAAATGACCTATTCTGC  850

seq1  TACAAAGACTAGTACAGGGCTCACTCTTATTAACTTCTACTATTGCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGACTAGTACAGGGCTCACTCTTATTAACTTCTACTATTGCAAAA  900

seq1  TAACCTGTCATCAAATAATCTTCAGCTAATTCGCCCTTCCCAACACCACT  950
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  TAACCTGTCATC-AATAATCTTCAGCTAATTCGCCCTTCCCAACA-CACT  948

seq1  TTTCTAACGCCATGCTCCTACCCCAGGCTGGAGATTCATCTTGCATTTCA  1000
      |||||||||||||||||||||||   |||||||| ||||| |||||||| 
seq2  TTTCTAACGCCATGCTCCTACCC--AGCTGGAGA-TCATC-TGCATTTC-  993

seq1  AATAGTTAATGAGTTGTCCCTTTCAAAACTTTGAGTAATGTACGGCTTCT  1050
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATAGTTAATGAGTTGTCCCTTTC-AAACTTTGAGTAATGTACGGCTTCT  1042

seq1  CAAATCAATCCAAATGCCTAACTCAAACACTAATGGTTTCCTGAGAGCAG  1100
      |||||||   |||||| |||||||||||    ||||||| |||| |||| 
seq2  CAAATCA--TCAAATG-CTAACTCAAAC---TATGGTTT-CTGAAAGCA-  1084

seq1  GTCTCAAGGTGCATATGTACCTTTTCTTCAAATCAGAAGGTTCTCTTCCA  1150
      ||||||| |||||||||||| || || ||         |  |||||||| 
seq2  GTCTCAA-GTGCATATGTACTTTCTCATC---------GAGTCTCTTCC-  1123

seq1  CACTCTAACAGGGTTTGGAAATAGTGTGCATCCTTTATGG  1190
      |||||||||||    ||||     ||||||||  ||||||
seq2  CACTCTAACAG---ATGGA-----TGTGCATC--TTATGG  1153

seq1: chr16_84272672_84273788
seq2: B6Ng01-078F10.g_69_1176 (reverse)

seq1  TACTCACCCTGCCCTG-TTCTCTCCTTTGTACAACTGCCATTCCTG-ATA  48
      ||||||||||| |||| |||||||| |||||  ||||| ||  ||| |||
seq2  TACTCACCCTGGCCTGTTTCTCTCC-TTGTAACACTGCAAT--CTGAATA  47

seq1  GTCTCCTTCCCTGTGTTTGCAAGTTCTCGCCACACACACTTGGACTCTAT  98
      |||||| ||||||   ||||||| |||||||||||||   ||||||||||
seq2  GTCTCC-TCCCTGGTGTTGCAAG-TCTCGCCACACACCACTGGACTCTAT  95

seq1  ATTCCACTAAAAATGCAGAATGTGTCTTTCATCATTTTACTTAACGCAAT  148
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  ATTCCACTAAAAATGCAGAATGTGTCTTTCATCA-TTTAC-TAACGCAAT  143

seq1  GATCTTAATTGCCCTCCATTTCCTGTGGTGTTGATTTCTACAATCCACAC  198
      |||| ||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GATC-TAATTGCCCTCCA-TTCCTGTGGTG-TGATTTCTACAATCCACAC  190

seq1  TTGACTCTAATGAGCTACATAGTCCCTGTTCACACAATTTTTGCAGGAAT  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGACTCTAATGAGCTACATAGT-CCTGTTCACACAATTTTTGCAGGAAT  239

seq1  TGATTTTCAAAAGGAACCTAATCTGAGACGAACTACACTGTGGCTAGCTT  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATTTTCAAAAGGGACCTAATCTGAGACGAACTACACTGTGGCTAGCTT  289

seq1  TTAAAACAATTTTCATTAATACTAATATGTAGTATCTAAAAACATATAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAATTTTCATTAATACTAATATGTAGTATCTAAAAACATATAAC  339

seq1  CTAATGATTGAATGCTTTATATGGTTGTAGATATGTAGAGCAATCTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATTGAATGCTTTATATGGTTGTAGATATGTAGAGCAATCTTATT  389

seq1  AAATGAAAATATTGATGTAAAGTCATTACAAGTCATATAATATTTACATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATATTGATGTAAAGTCATTACAAGTCATATAATATTTACATT  439

seq1  CATTTTTAATTTGATAAATAAATGTAATTGAATTTAATTTTATACTGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAATTTGATAAATAAATGTAATTGAATTTAATTTTATACTGAAA  489

seq1  ATGATGAACTTTAGAAAATACCATAATAATCATACTGAAAATTTATCAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAACTTTAGAAAATACCATAATAATCATACTGAAAATTTATCAAT  539

seq1  GATAACTAGAAAACATGAGTTTTCACAATGTATACTATGTATTTTGTGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAGAAAACATGAGTTTTCACAATGTATACTATGTATTTTGTGGT  589

seq1  GAATATAGACTAATATAAAATGCTGACACATAAAAAATTTATCTCAGTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGACTAATATAAAATGCTGACACATAAAAAATTTATCTCAGTGT  639

seq1  CATGTATAATACACATAGTTGAAATTCATGGCAGTAAATGAGACATTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATAATACACATAGTTGAAATTCATGGCAGTAAATGAGACATTCAT  689

seq1  TCAATAAACTATGGAATAGAAAACATGATTTCAAATCAAGCATAAAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAACTATGGAATAGAAAACATGATTTCAAATCAAGCATAAAAACT  739

seq1  GCCTCCACATCCAGCATTTGTGCTTGCTCAAGATCCAAACTCTGGGTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACATCCAGCATTTGTGCTTGCTCAAGATCCAAACTCTGGGTCTC  789

seq1  ACACTTGTGGGGCAATTACTTTACTGAGTAAAGAAACCAACCCCAAATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTGGGGCAATTACTTTACTGAGTAAAGAAACCAACCCCAAATTG  839

seq1  TCCTTTAAGACAACGGAGAATAAAGACTCTACAACTTTGTGGTTGCTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAGACAACGGAGAATAAAGACTCTACAACTTTGTGGTTGCTCAG  889

seq1  CATGACCACGTGAGCCAATCCTCTATAACCCAGCTAAAGAGCCAAACATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCACGTGAGCCAATCCTCTATAACCCAGCTAAAGAGCCAAACATC  939

seq1  TTCAGACTGTCTTGCTTTCCCCTTTCTTTTCTTTTTTTCATTTTGCTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTGTCTTGCTTTCCCCTTTCTTTTCTTTTTTTCATTTTGCTTTA  989

seq1  CAGAGATGCTCCCATCACTCTGAACATCTAAGATTGTCGATATCCCTGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGCTCCCATCACTCTGAACATCTAAGATTGTCGATATCCCTGGT  1039

seq1  GCAGCCTCATATTCTGCAAACATTCTGAATGATGTACCATCAAGAGAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCATATTCTGCAAACATTCTGAATGATGTACCATCAAGAGAGAG  1089

seq1  ACAGCATAGCCAGGAATTC  1117
      |||||||||||||||||||
seq2  ACAGCATAGCCAGGAATTC  1108