BAC Information

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BAC

Clone NameB6Ng01-078P21
Chromosome16 (Build37)15 (Build37)
Map Location 25,297,416 - 25,297,9173,969,677 - 3,970,367
singlet/doubletsingletsinglet
Overlap gene5430420C16Rik
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream geneTrp63, LOC100043571, Leprel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078P21.bB6Ng01-078P21.g
ACCDH894539DH894540
length906694
definitionDH894539|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P21, 5' end.DH894540|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,297,416 - 25,297,917)(3,969,677 - 3,970,367)
sequence
gaattcaaacaattcaagagcaaaagcatccctcaaataatccaagcaaa
agtaggcagcatggctgggtatggcatcacttctttaatcctagcactca
ggaagcagaggcaggtggattgatgagttcaaggccagactagtctacag
agcatgtttcaggacagccagggctacacagagaaaccctgtctcaaagc
aagcaagcaaacaaacaaacacacaaacaagtgggcagtatatctaaata
agacatgtaagggagacatacaaaagaccaaatgagaatttggtttatga
aaattcacaacatccttaatcattaaagaaatgaaaatcaaagccacaat
gaaattctggcccaatctagttaaattagctactgtcagagagacaaagc
taactgctcttgttctctctgctgagacctgtgtcaaagcacaaaggaag
aagtgttggcatgggtctaacaggggatacttgtaggaacagactgggga
agccactgtgaacctcggtgtaagtttccctcaaaacttaaaagtagaat
caccataggagccagcaacctcactacaaaggagatcagctcgtcacgcc
aacaatacaaccacattcccaactcataagaactaagaaatagaaagaac
ctgaatgcccaccacctaatgaatcctaatgaatggatacagaaaacagg
gttcatgcacaatggaatattatctactaactaaaaaataaaaaaggaat
tcttagattttgtggcaacacacacgaaagaggaagtcactgccttagat
gcaatatgtgagcaggctcattaaaatgagcgctgcatgatctcacttgc
acggagaggagaaagagtatgacatcatagaaagggtgagtgtatcctgg
ttcccc
gaattctttattttatgtgtatgaatgttttatctgcatgtgcccaagac
tagtttgtgccatgtgtggtgcctgtggaggccagaagagggtataagat
tccttggaaatggagttatagacaaatataagctgccatgtgggtgatgg
gaaccaaaacaaagatgctctgcacgagtagcaaattctctcaaccactg
acccatctctccagccattatggttaatattttccaagaaatatcctcat
ctaagataaaggtcagcagccggtccatccttggcttctttgagacatta
aatgaccatcttgttctcagactttatctgactctgatgtccatcctcgt
accttcaaagacttctcaaaatacttaggaaaggttctaaaaacactggg
tatacatccgaaatgaaaggtgaaagaatgcttaaatgtaatagaggagc
agtgtttatttgggggtggggggattcacaatcatctatatgaacaaaac
tgaaatggaaacccagaaataatgcaggttttgtcaaactggagaactag
tgtgaaattcaaagatatctcaggaaagaggggtctaagggtaagaaaga
tgaatataaagtacagagtttaaatcctgcctgatgttttcctggtgtgt
gagcaaagatgaaatactagccatgggtcttaatatgcactccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25297416_25297917
seq2: B6Ng01-078P21.b_60_328 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTGGTCTTTTGTATGTCTCCCTTACATGTCTTATTTAGATATACTGCCCA  50

seq1  ---------------------TTGGT--CT---TTTGAGACAGGACAGGG  24
                           ||| |  ||   |||||     |||||||
seq2  CTTGTTTGTGTGTTTGTTTGTTTGCTTGCTTGCTTTGA-----GACAGGG  95

seq1  TTTCTCTGTGTA-CCTTGGTTTTGAGGTCCAGGATACTGGCTGGCCTG--  71
      |||||||||||| || ||| |     ||||  || ||  |||   |||  
seq2  TTTCTCTGTGTAGCCCTGGCT-----GTCC-TGAAACATGCT---CTGTA  136

seq1  GACCAGGCCGGCCTCAAACTACAGAGATCTGCCTGCCTCTGCCTCCTGAG  121
      ||| || | |||||  |||| ||   |||  ||||||||||| |||||||
seq2  GACTAGTCTGGCCTTGAACT-CATCAATCCACCTGCCTCTGCTTCCTGAG  185

seq1  TGCTGAGACTTTAAAACCTCTTTAATCTAGTATTGCTACTTATTCTCCCA  171
      ||||  ||             ||||   |||  |||  | ||    ||||
seq2  TGCTAGGA-------------TTAAAGAAGTGATGC--CATA----CCCA  216

seq1  CGAGGTTCCATATTGCATGCAATGGAATCCGTTTTTGATT-CATTATTCA  220
             ||||  ||| | |            ||||| ||  ||||||  
seq2  ------GCCATGCTGCCTAC------------TTTTGCTTGGATTATT--  246

seq1  ACTTAAGTA-GCTTATGC-AAGGAACAATGATCACATTCTTGGGCTGTGG  268
        | | | | |||| |||    |||                         
seq2  --TGAGGGATGCTTTTGCTCTTGAA-------------------------  269

seq1  GAGAGAAACCCTAAATGGCAGCTTTCTTTGAGTAAAGGAGTCCCAGAAAC  318
                                                        
seq2  --------------------------------------------------  269

seq1  CATGGTTGGCCTATTACAGAGGCTACAGAATCAGCAGTGACCCACCATGT  368
                                                        
seq2  --------------------------------------------------  269

seq1  TGAGGCTGGTGGAACAGGAAAGGTGTTTTATCTGGAACAGTACCCCACAG  418
                                                        
seq2  --------------------------------------------------  269

seq1  AGACTGTTTCCAAAGTGTTGCTTTCATTGGCTATATAATGAACGAGATAG  468
                                                        
seq2  --------------------------------------------------  269

seq1  GAAGTTTCCATCATGCAATGCTTTTGCTCTTGAA  502
                                        
seq2  ----------------------------------  269

seq1: chr15_3969677_3970367
seq2: B6Ng01-078P21.g_68_761

seq1  GAATTCTTTATTTTATGTGTATGAATGTTTTATCTGCATGTGCCCAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTTATGTGTATGAATGTTTTATCTGCATGTGCCCAAGAC  50

seq1  TAGTTTGTGCCATGTGTGGTGCCTGTGGAGGCCAGAAGAGGGTATAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTGCCATGTGTGGTGCCTGTGGAGGCCAGAAGAGGGTATAAGAT  100

seq1  TCCTTGGAAATGGAGTTATAGACAAATATAAGCTGCCATGTGGGTGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGAAATGGAGTTATAGACAAATATAAGCTGCCATGTGGGTGATGG  150

seq1  GAACCAAAACAAAGATGCTCTGCACGAGTAGCAAATTCTCTCAACCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAAACAAAGATGCTCTGCACGAGTAGCAAATTCTCTCAACCACTG  200

seq1  ACCCATCTCTCCAGCCATTATGGTTAATATTTTCCAAGAAATATCCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTCTCCAGCCATTATGGTTAATATTTTCCAAGAAATATCCTCAT  250

seq1  CTAAGATAAAGGTCAGCAGCCGGTCCATCCTTGGCTTCTTTGAGACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAAAGGTCAGCAGCCGGTCCATCCTTGGCTTCTTTGAGACATTA  300

seq1  AATGACCATCTTGTTCTCAGACTTTATCTGACTCTGATGTCCATCCTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCATCTTGTTCTCAGACTTTATCTGACTCTGATGTCCATCCTCGT  350

seq1  ACCTTCAAAGACTTCTCAAAATACTTAGGAAAGGTTCTAAAAACACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAAGACTTCTCAAAATACTTAGGAAAGGTTCTAAAAACACTGGG  400

seq1  TATACATCCGAAATGAAAGGTGAAAGAATGCTTAAATGTAATAGAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCCGAAATGAAAGGTGAAAGAATGCTTAAATGTAATAGAGGAGC  450

seq1  AGTGTTTATTTGGGGGTGGGGGGATTCACAATCATCTATATGAACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTATTTGGGGGTGGGGGGATTCACAATCATCTATATGAACAAAAC  500

seq1  TGAAATGGAAACCCAGAAATAATGCAGGTTTTGTCAAACTGGAGAACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGAAACCCAGAAATAATGCAGGTTTTGTCAAACTGGAGAACTAG  550

seq1  TGTGAAATTCAAAGATATCTCAGG-AAGAGGGGTCTAAGGGTAAGAAAGA  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGAAATTCAAAGATATCTCAGGAAAGAGGGGTCTAAGGGTAAGAAAGA  600

seq1  TGAATATAAAGTACAGAGTTTAAATCCTGCCTGATG-TTTCCTGGTGTGT  648
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAATATAAAGTACAGAGTTTAAATCCTGCCTGATGTTTTCCTGGTGTGT  650

seq1  GAGCAAAGATGAAATACTAGCCAT-GGTCTAAATATGCACTCCC  691
      |||||||||||||||||||||||| ||||| |||||||||||||
seq2  GAGCAAAGATGAAATACTAGCCATGGGTCTTAATATGCACTCCC  694