BAC Information

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BAC

Clone NameB6Ng01-079L18
Chromosome16 (Build37)
Map Location 78,788,500 - 78,880,190
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik
Downstream geneChodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079L18.bB6Ng01-079L18.g
ACCDH895059DH895060
length1,1471,158
definitionDH895059|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L18, 5' end.DH895060|Mus musculus domesticus DNA, BAC clone: B6Ng01-079L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,788,500 - 78,789,679)(78,879,019 - 78,880,190)
sequence
gaattccttttactagctaaaagatatataaatatacttgacagtcatta
aaaagatgcccgatttgcatttgaaatataaccatgtaacaaaattgaaa
atattacaatactaaaaaaggaaagacaagaaatgaagccagtagatata
ttttcaatagcatagtatatttccagttaccacatttttttgctgatgtt
tgtacttaaatgtatattaaaaagtttcttatcccaagtaaagagcatta
ctaaaattactgtgtgccactctgaaagatgagagaaacccatattcagt
ttccataatgaaatccatatttgcttggttgtgatccaaattgtttttga
aaagtatatatttaattgaggcagatgaagtggtccaaaatttaataagt
attaaaaaaaaggaaaatttaaagagaaaatttccaattaaagatgagta
cctgatgattgctcaggcccaattattaatattgattaatgttttgtact
ttagcaggtctttccaggacagagatgcaagagtgtaaactcagcatcat
acaaagcagttatgcttgcatctttctctgatgggatcaaagcccgtgga
agcaattaataagttgagaattcagtggagcaatgttaccactttaggta
aataagttcttaaaacatctggattatcattgtcagtttcccaggaaatt
ccataaagatccttctactatcttatgaatctgctgtaggtccctttacc
tgaatattttctaggcctgctattcatagtgaccgtgggacactgtatat
tgaatgctggcagatttaagatggattttaactgtacaaagaaacatttg
ttattggcaaatatcattttcttcatcagtgttatgttgctgtgaagaga
aaacatgatgacagcactcctataaaataaatatttaatcaggcatgatt
atagtttcagagattagtcccattatcatcaggcagaaagcatgtagtag
cagcagatgtgtgctgaagagtagctgaaagctctacactgatccacagc
agaagagaaagagatgattgcatgcatttgaacctcatgccaccctatga
cccacttctcaatgaacccaacctctattctctcaggtaatacatcc
gaattctcaccaggtatggctttccaaatacaaatgcttttagtcctctg
ttgacaacactgtgcaagcatatatatatatatatatatatatatatatt
tgatttagtttttattccacatcaaaccctgcagtcatagggtttttatt
tgcattatccttggtctgttgttgtatttacaaccttgcttggattcata
cgagaaatattaaagactcgatgtattttgtattatcagtgaccatatca
aaggcttaagacagtccagcatcttaaagcatatcttcttctagcaataa
cttattcaaaagagctatgaatattctcccataaaatacatgactgatac
tgaccaataataccaccaaatgacatgggaatgataaatatccgaaatat
aacctatctcttggtaatgatttcccccatattttaaatttttactatct
gaatgccataggatatacattttcccaatctgcgaagttgctattctttg
tatagaagttgatcatttcacactcaaagctcaacaacaagattaaatgt
tggaaaaaaatcaagaattacaatgcagaactagctaaaacagaatgtag
agggatatttctttaaagaatccaaacatatcaacacaataatatgcctg
agttctgaatctgaaaaagaatcggtgtcctgtgaatgcaaatgtaacat
tacaaatgtccttaaaaatctctttttcaaatgtgcctcctgtctcctta
caaataagtatatgaaagagtctctcaaaggaagatgaagtccatttttt
ttatattttgttataaaccacaggatgcctttcttttttaaaatgctcat
taagttgtacaaacttcctgtgaagaaatatttgccaatttaaaatttct
aaaagtgaaactctgaagttataggaaaaccttcatgatctagatctaca
aattatgtaaatgtttgcttaaaaagcagagatctcagttcttaggtgga
atattttatttggcatattgcttttcattacatttgactttctattagca
acagtaatactatagcatgttatcttcatattttctactatttctttctt
tttcaaagtttagtttccacttcactattggggaaattattctatacatg
gcctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78788500_78789679
seq2: B6Ng01-079L18.b_47_1193

seq1  GAATTCCTTTTACTAGCTAAAAGATATATAAATATACTTGACAGTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTACTAGCTAAAAGATATATAAATATACTTGACAGTCATTA  50

seq1  AAAAGATGCCCGATTTGCATTTGAAATATAACCATGTAACAAAATTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGCCCGATTTGCATTTGAAATATAACCATGTAACAAAATTGAAA  100

seq1  ATATTACAATACTAAAAAAGGAAAGACAAGAAATGAAGCCAGTAGATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAATACTAAAAAAGGAAAGACAAGAAATGAAGCCAGTAGATATA  150

seq1  TTTTCAATAGCATAGTATATTTCCAGTTACCACATTTTTTTGCTGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATAGCATAGTATATTTCCAGTTACCACATTTTTTTGCTGATGTT  200

seq1  TGTACTTAAATGTATATTAAAAAGTTTCTTATCCCAAGTAAAGAGCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTAAATGTATATTAAAAAGTTTCTTATCCCAAGTAAAGAGCATTA  250

seq1  CTAAAATTACTGTGTGCCACTCTGAAAGATGAGAGAAACCCATATTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTACTGTGTGCCACTCTGAAAGATGAGAGAAACCCATATTCAGT  300

seq1  TTCCATAATGAAATCCATATTTGCTTGGTTGTGATCCAAATTGTTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAATGAAATCCATATTTGCTTGGTTGTGATCCAAATTGTTTTTGA  350

seq1  AAAGTATATATTTAATTGAGGCAGATGAAGTGGTCCAAAATTTAATAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATATATTTAATTGAGGCAGATGAAGTGGTCCAAAATTTAATAAGT  400

seq1  ATTAAAAAAAAGGAAAATTTAAAGAGAAAATTTCCAATTAAAGATGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAGGAAAATTTAAAGAGAAAATTTCCAATTAAAGATGAGTA  450

seq1  CCTGATGATTGCTCAGGCCCAATTATTAATATTGATTAATGTTTTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATTGCTCAGGCCCAATTATTAATATTGATTAATGTTTTGTACT  500

seq1  TTAGCAGGTCTTTCCAGGACAGAGATGCAAGAGTGTAAACTCAGCATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGTCTTTCCAGGACAGAGATGCAAGAGTGTAAACTCAGCATCAT  550

seq1  ACAAAGCAGTTATGCTTGCATCTTTCTCTGATGGGATCAAAGCCCGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAGTTATGCTTGCATCTTTCTCTGATGGGATCAAAGCCCGTGGA  600

seq1  AGCAATTAATAAGTTGAGAATTCAGTGGAGCAATGTTACCACTTTAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTAATAAGTTGAGAATTCAGTGGAGCAATGTTACCACTTTAGGTA  650

seq1  AATAAGTTCTTAAAACATCTGGATTATCATTGTCAGTTTCCCAGGAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTCTTAAAACATCTGGATTATCATTGTCAGTTTCCCAGGAAATT  700

seq1  CCATAAAGATCCTTCTACTATCTTATGAATCTGCTGTAGGTCCCTTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGATCCTTCTACTATCTTATGAATCTGCTGTAGGTCCCTTTACC  750

seq1  TGAATATTTTCTAGGCCTGCTATTCATAGTGACCGTGGGACACTGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTTCTAGGCCTGCTATTCATAGTGACCGTGGGACACTGTATAT  800

seq1  TGAATGCTGGCAGATTTAAGATGGATTTTAACTGTACAAAGAAACATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTGGCAGATTTAAGATGGATTTTAACTGTACAAAGAAACATTTG  850

seq1  TTATTGGCAAAATATCATTTTCTTCATCAGTGTTATGTTGCTGTGAAGAG  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGC-AAATATCATTTTCTTCATCAGTGTTATGTTGCTGTGAAGAG  899

seq1  AAAACATGATGACAGCAACTCCTATAAAATAAATATTTAATCAGGGCATG  950
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AAAACATGATGACAGC-ACTCCTATAAAATAAATATTTAATCA-GGCATG  947

seq1  ATTATAGTTTCAGAGATTTAGTCCCATTATCATCAGGGCAGAAAGCATGG  1000
      |||||||||||||||| |||||||||||||||||| |||||||||||| |
seq2  ATTATAGTTTCAGAGA-TTAGTCCCATTATCATCA-GGCAGAAAGCAT-G  994

seq1  TAGTAGGCAGGCAGATGTGGTGCTGAAGAGGTAAGCTGAGAGCTCTACAA  1050
      ||||| ||| |||||||| |||||||||||   |||||| |||||||| |
seq2  TAGTA-GCA-GCAGATGT-GTGCTGAAGAG--TAGCTGAAAGCTCTAC-A  1038

seq1  CTGGATCCACAAGCAGAAGGAAGAAAGAGATTGGATTTGGCATGGCATTT  1100
      || ||||||| ||||||||  ||||||||||  ||||  |||| ||||||
seq2  CT-GATCCAC-AGCAGAAG--AGAAAGAGAT--GATT--GCAT-GCATTT  1079

seq1  TGAAACCTCAGTGCCCACCCCTAATGACACACTTCCTCCAATAGAGCCAC  1150
         ||||||| || ||||||   ||||| ||||||   |||| || ||  
seq2  --GAACCTCA-TG-CCACCC--TATGACCCACTTC--TCAAT-GAACCCA  1120

seq1  ACCTCTATTCCTTCTCAAGTAATACCATCC  1180
      ||||||||||  ||||| |||||| |||||
seq2  ACCTCTATTC--TCTCAGGTAATA-CATCC  1147

seq1: chr16_78879019_78880190
seq2: B6Ng01-079L18.g_68_1225 (reverse)

seq1  ACTGAGCCATTGTATAGAATAAATTTTCTCCAATAAGTGAAGTTGGAACT  50
      |||||| |  ||||||||||||  |||| ||||| |||||||| | ||||
seq2  ACTGAGGCCATGTATAGAATAA--TTTCCCCAAT-AGTGAAGTGGAAACT  47

seq1  AAACCTTGGAAAAAAGAAGAAATATGTAAGAAATATGAAGATAACATTGC  100
      ||| ||| ||||||  |||||||| |||  |||||||||||||||| |||
seq2  AAA-CTTTGAAAAAGAAAGAAATA-GTAGAAAATATGAAGATAACA-TGC  94

seq1  TATTAGTATTACTGTTGCTAATAGAAAGTCAAATTGTAATGAAAAGCAAT  150
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TA-TAGTATTACTGTTGCTAATAGAAAGTCAAA-TGTAATGAAAAGCAAT  142

seq1  AATGCCAAATAAAATATCCAACCTAAGAACTGAGATTCTCTGCTTTTTAA  200
       |||||||||||||||| | ||||||||||||||| ||||||||||||||
seq2  -ATGCCAAATAAAATATTCCACCTAAGAACTGAGA-TCTCTGCTTTTTAA  190

seq1  GCAAACATTTTACATAATTTTGTAGATCTAGATCATGAAGGTTTTCCTAT  250
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAAACA-TTTACATAA-TTTGTAGATCTAGATCATGAAGGTTTTCCTAT  238

seq1  AACTTCAAGAGTTTTCACTTTTTAGAAATTTTAAATTGGCAAATATTTCT  300
      |||||| |||| |||||| |||||||||||||||||||||||||||||||
seq2  AACTTC-AGAG-TTTCAC-TTTTAGAAATTTTAAATTGGCAAATATTTCT  285

seq1  TCACAGGAAGTTTGTACAACTTAATGAGCATTTTAAAAAAGAAAGGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGAAGTTTGTACAACTTAATGAGCATTTTAAAAAAGAAAGGCATC  335

seq1  CTGTGGTTTATAACAAAATAT-AAAAAAATGGACTTCATCTTCCTTTGAG  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGTGGTTTATAACAAAATATAAAAAAAATGGACTTCATCTTCCTTTGAG  385

seq1  AGACTCTTTCATATACTTATTTGTAAGGAGACAGGAGGCACATTTGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTCATATACTTATTTGTAAGGAGACAGGAGGCACATTTGAAAA  435

seq1  AGAGATTTTTAAGGACATTTGTAATGTTACATTTGCATTCACAGGACACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTTTAAGGACATTTGTAATGTTACATTTGCATTCACAGGACACC  485

seq1  GATTCTTTTTCAGATTCAGAACTCAGGCATATTATTGTGTTGATATGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTTTCAGATTCAGAACTCAGGCATATTATTGTGTTGATATGTTT  535

seq1  GGATTCTTTAAAGAAATATCCCTCTACATTCTGTTTTAGCTAGTTCTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTAAAGAAATATCCCTCTACATTCTGTTTTAGCTAGTTCTGCA  585

seq1  TTGTAATTCTTGATTTTTTTCCAACATTTAATCTTGTTGTTGAGCTTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTCTTGATTTTTTTCCAACATTTAATCTTGTTGTTGAGCTTTGA  635

seq1  GTGTGAAATGATCAACTTCTATACAAAGAATAGCAACTTCGCAGATTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAATGATCAACTTCTATACAAAGAATAGCAACTTCGCAGATTGGG  685

seq1  AAAATGTATATCCTATGGCATTCAGATAGTAAAAATTTAAAATATGGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATATCCTATGGCATTCAGATAGTAAAAATTTAAAATATGGGGG  735

seq1  AAATCATTACCAAGAGATAGGTTATATTTCGGATATTTATCATTCCCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTACCAAGAGATAGGTTATATTTCGGATATTTATCATTCCCATG  785

seq1  TCATTTGGTGGTATTATTGGTCAGTATCAGTCATGTATTTTATGGGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGTGGTATTATTGGTCAGTATCAGTCATGTATTTTATGGGAGAA  835

seq1  TATTCATAGCTCTTTTGAATAAGTTATTGCTAGAAGAAGATATGCTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAGCTCTTTTGAATAAGTTATTGCTAGAAGAAGATATGCTTTAA  885

seq1  GATGCTGGACTGTCTTAAGCCTTTGATATGGTCACTGATAATACAAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGACTGTCTTAAGCCTTTGATATGGTCACTGATAATACAAAATA  935

seq1  CATCGAGTCTTTAATATTTCTCGTATGAATCCAAGCAAGGTTGTAAATAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGTCTTTAATATTTCTCGTATGAATCCAAGCAAGGTTGTAAATAC  985

seq1  AACAACAGACCAAGGATAATGCAAATAAAAACCCTATGACTGCAGGGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGACCAAGGATAATGCAAATAAAAACCCTATGACTGCAGGGTTT  1035

seq1  GATGTGGAATAAAAACTAAATCAAATATATATATATATATATATATATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAATAAAAACTAAATCAAATATATATATATATATATATATATAT  1085

seq1  ATATGCTTGCACAGTGTTGTCAACAGAGGACTAAAAGCATTTGTATTTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTGCACAGTGTTGTCAACAGAGGACTAAAAGCATTTGTATTTGG  1135

seq1  AAAGCCATACCTGGTGAGAATTC  1172
      |||||||||||||||||||||||
seq2  AAAGCCATACCTGGTGAGAATTC  1158