BAC Information

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BAC

Clone NameB6Ng01-079P04
Chromosome2 (Build37)16 (Build37)
Map Location 142,776,817 - 142,777,69854,398,740 - 54,399,943
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079P04.bB6Ng01-079P04.g
ACCDH895217DH895218
length9841,195
definitionDH895217|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P04, 5' end.DH895218|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,817 - 142,777,698)(54,398,740 - 54,399,943)
sequence
gaattctttgttcagttctgatccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatatgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttttcttattgacggtgtcttttaccttgcagaagctttgcagtttca
tgaggtctcatttgtcaattctggatcttacagtgcaagccattgctgtt
ctactcaggaaattttcccgtgtgcccatatcttcaagacttttccccac
tttcttctctataagtttcagtgtctctggttttatgtgtagttcattga
tccacttagatttgaccttagtacaaggagataggaatggatcgatttgc
attcttacaatgataacaaccttaggatctttttgcattttgcattttct
ttgattgttgtgctgatgttctctgtggaatcttctgcacctgtgattct
ctcttccatctcttgtattctgttgctgatgctggcatctatcgctccag
atttctttcctagggtttctatctccagcgttgcctcattttgggttttc
ttcattgtgtgtactttccttttttggtctagtatggttttgttcatttc
tatcacctctttggatgtgctttcctgtttttctttaaggacttctacct
gtttggttgttttttcctgtttttctttaaggacttgtaattctttagca
gtgtttagttgtatttctttaattgtgttattaaagtccttcttgatgtt
ctctaccatcatcatgaggtatgcttgtaaatccgtgtctagatttttgg
gtgtgttggggtgcccaggattgggtgaagttggagtgctgcattctgat
gatggtgagtggtcttggtttctgttagtgagattcttacgtttgcctgt
tgccatctggtaatctctggagttaattgttata
gaattcaggcacaaaaccctgtgagaatgagagtcacttccaaaaatgag
aactggtatattgtgcaataacttttcccttagaataaagtgaaaagaaa
ataagattgttatagtagctaaaagatcaatggatattttggcaatggaa
gtgacacctgaaaatggcagtagacttgggtgttctcattcagttaatta
gaactactttgtgtaaaattcctgccatgccaatgaaggaagtcttgatt
agtttcagggcttttaggttaagccacaatagattcaattatttcttctg
taacttcatctatgtaaatcagatagtcagaactgttctctttttggctc
tcagttatgaccttgcctctacaaatatgactgggatcctccctacaaaa
ggaaaaaaagtatattcttttaaattttgagtatagattgtctgctgacc
tttcaaggaagatacagggttaagggccatgaggtagaaagttactcaga
atctagaagacctttgaatgtgtactgatcaaaatttaaacaatgttgga
atatttcaaccatgagaataagatataggaaaaaatacctagctgtactc
ctggaaacatactctaagatttgcataccttaccacaaagatacttgcac
cctgatgtctatttctgttcaagtcacaacagctaagagatgggattatt
ttagataaccatttatagataatgaagtatgtgttacacttagagaattg
tgttttattcagctgtaaaaataaaattataaaatcagcaagaatgtata
tgaaactagaaaatgtattaagtgatgtagaaaatcaaatactgcatatt
ctctctcatatgcatttattttatgaatgtatatatgaaaatatttattc
atatatatgcatataaacatatatctatattttatgtttgtgtgtgtgag
tgtgggtagaggtcaagaaaatagaagtgattctatgaaagaaaaattcg
gttttaggaagataattaggagacaatataacatatatgataaatagaga
agcaatagagcatatgtgatatgaaagtggacaggaggtattggagtaga
aggattttagtttgtgagacagagcaatattattattaaggaatattttg
gaactgtttatcacaaacttgaggtttcctttttctctctgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776817_142777698
seq2: B6Ng01-079P04.b_52_472 (reverse)

seq1  GGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGG  400
                                                        
seq2  --------------------------------------------------  0

seq1  CTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGC  450
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTT  500
                |||||||||||| |  |||||||| ||||||||||| | |
seq2  ----------GGTTGTTATCAT-TGTAAGAATGCAAATCGATCCATTCCT  39

seq1  ATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAA  550
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  ATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAATGAACTACACATAA  89

seq1  AACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAA  600
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  AACCAGAGACACTGAAACTTATAGAGAAGAAAGTGGGGAAAAGTCTTGAA  139

seq1  GATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGC  650
      |||||||||||| ||||||| |||||||  |||| ||||||||||||  |
seq2  GATATGGGCACACGGGAAAATTTCCTGAGTAGAACAGCAATGGCTTGCAC  189

seq1  TGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCT  700
      ||||||||| |||||||||||||| ||||| |||||||| ||||| ||||
seq2  TGTAAGATCCAGAATTGACAAATGAGACCTCATGAAACTGCAAAGCTTCT  239

seq1  GCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGG  750
      |||||| ||||||||| ||| |||||| |||||| ||||||||||| |||
seq2  GCAAGGTAAAAGACACCGTCAATAAGAAAAAAAGGCCACCAACAGATTGG  289

seq1  GAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACAT  800
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GAAAGGATCTTTACCTATCCTAAATCATATAGGGGACTAATATCCAATAT  339

seq1  ATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCATTA  850
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  ATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTA  389

seq1  AAAAATGGGGCTCAGAACTGAACAAAGAATTC  882
      |||||||||| |||||||||||||||||||||
seq2  AAAAATGGGGATCAGAACTGAACAAAGAATTC  421

seq1: chr16_54398740_54399943
seq2: B6Ng01-079P04.g_67_1261

seq1  GAATTCAGGCACAAAACCCTGTGAGAATGAGAGTCACTTCCAAAAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCACAAAACCCTGTGAGAATGAGAGTCACTTCCAAAAATGAG  50

seq1  AACTGGTATATTGTGCAATAACTTTTCCCTTAGAATAAAGTGAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTATATTGTGCAATAACTTTTCCCTTAGAATAAAGTGAAAAGAAA  100

seq1  ATAAGATTGTTATAGTAGCTAAAAGATCAATGGATATTTTGGCAATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTGTTATAGTAGCTAAAAGATCAATGGATATTTTGGCAATGGAA  150

seq1  GTGACACCTGAAAATGGCAGTAGACTTGGGTGTTCTCATTCAGTTAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCTGAAAATGGCAGTAGACTTGGGTGTTCTCATTCAGTTAATTA  200

seq1  GAACTACTTTGTGTAAAATTCCTGCCATGCCAATGAAGGAAGTCTTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTTTGTGTAAAATTCCTGCCATGCCAATGAAGGAAGTCTTGATT  250

seq1  AGTTTCAGGGCTTTTAGGTTAAGCCACAATAGATTCAATTATTTCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGGGCTTTTAGGTTAAGCCACAATAGATTCAATTATTTCTTCTG  300

seq1  TAACTTCATCTATGTAAATCAGATAGTCAGAACTGTTCTCTTTTTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCATCTATGTAAATCAGATAGTCAGAACTGTTCTCTTTTTGGCTC  350

seq1  TCAGTTATGACCTTGCCTCTACAAATATGACTGGGATCCTCCCTACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATGACCTTGCCTCTACAAATATGACTGGGATCCTCCCTACAAAA  400

seq1  GGAAAAAAAGTATATTCTTTTAAATTTTGAGTATAGATTGTCTGCTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAGTATATTCTTTTAAATTTTGAGTATAGATTGTCTGCTGACC  450

seq1  TTTCAAGGAAGATACAGGGTTAAGGGCCATGAGGTAGAAAGTTACTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGAAGATACAGGGTTAAGGGCCATGAGGTAGAAAGTTACTCAGA  500

seq1  ATCTAGAAGACCTTTGAATGTGTACTGATCAAAATTTAAACAATGTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAGACCTTTGAATGTGTACTGATCAAAATTTAAACAATGTTGGA  550

seq1  ATATTTCAACCATGAGAATAAGATATAGGAAAAAATACCTAGCTGTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAACCATGAGAATAAGATATAGGAAAAAATACCTAGCTGTACTC  600

seq1  CTGGAAACATACTCTAAGATTTGCATACCTTACCACAAAGATACTTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACATACTCTAAGATTTGCATACCTTACCACAAAGATACTTGCAC  650

seq1  CCTGATGTCTATTTCTGTTCAAGTCACAACAGCTAAGAGATGGGATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTCTATTTCTGTTCAAGTCACAACAGCTAAGAGATGGGATTATT  700

seq1  TTAGATAACCATTTATAGATAATGAAGTATGTGTTACACTTAGAGAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAACCATTTATAGATAATGAAGTATGTGTTACACTTAGAGAATTG  750

seq1  TGTTTTATTCAGCTGTAAAAATAAAATTATAAAATCAGCAAGAATGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTCAGCTGTAAAAATAAAATTATAAAATCAGCAAGAATGTATA  800

seq1  TGAAACTAGAAAATGTATTAAGTGATGTAGAAAATCAAATACTGCATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAGAAAATGTATTAAGTGATGTAGAAAATCAAATACTGCATATT  850

seq1  CTCTCTCATATGCATTTATTTTATGAATGTATATATGAAAATATTTAATT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTCTCATATGCATTTATTTTATGAATGTATATATGAAAATATTT-ATT  899

seq1  CATATATATGCATATAAACATATATCTATATTTTATGTTTGTGTGTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATGCATATAAACATATATCTATATTTTATGTTTGTGTGTGTGA  949

seq1  GTGTGGGTAGAGGTCAAGAAAATAGAAGTGATTCTATGACAGAAAAATTC  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGTGGGTAGAGGTCAAGAAAATAGAAGTGATTCTATGAAAGAAAAATTC  999

seq1  GGTTTTAAGGAAAGATAATAAGGAAGACAATATAACATATATGATAAATA  1050
      |||||||  | |||||||| ||| ||||||||||||||||||||||||||
seq2  GGTTTTA--GGAAGATAATTAGG-AGACAATATAACATATATGATAAATA  1046

seq1  GAGAAGGCAATAGAGCATATGTGATATGAAAGTGGACAGGGAGGTATT-G  1099
      ||||| |||||||||||||||||||||||||||||||| ||||||||| |
seq2  GAGAA-GCAATAGAGCATATGTGATATGAAAGTGGACA-GGAGGTATTGG  1094

seq1  AGTAGAAGGATTTTAAGTAGTGAG-CAGAGCAAATATATATATAGGGAAT  1148
      |||||||||||||||  | ||||| ||||||||   |||   || |||||
seq2  AGTAGAAGGATTTTAGTTTGTGAGACAGAGCAATATTATTATTAAGGAAT  1144

seq1  -TATTGAGACTGTTATATCAACCAAACATGAGTGTTCTACTTTCATCTCT  1197
       | |||  |||||| |||||  ||||| ||||  |||  ||||  |||||
seq2  ATTTTGGAACTGTT-TATCA--CAAACTTGAGGTTTC--CTTT-TTCTCT  1188

seq1  CTGACAA  1204
      |||||||
seq2  CTGACAA  1195