BAC Information

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BAC

Clone NameB6Ng01-080A13
Chromosome16 (Build37)
Map Location 97,409,777 - 97,601,065
singlet/doubletdoublet
Overlap geneBace2
Upstream gene4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4, Dscam
Downstream geneMx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080A13.bB6Ng01-080A13.g
ACCDH895282DH895283
length960780
definitionDH895282|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A13, 5' end.DH895283|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,409,777 - 97,410,634)(97,600,287 - 97,601,065)
sequence
gaattctaagttttctctggacaactgagcatgaaacacagtcaagggta
ttgtgatcagtagggaagtagtaaaattcccatccttgagcaatctactc
tgaaacaccctgagcaagggtgcagggtattaaatcaacacatagaattg
aactgtttttctctgtagtttcagcatacctggaaatgaagatggtaata
tcacagcagcatcggaggaaacagaaaacaaaactggaaatgtgcttttc
aaaagaaatacaagacacacatcatgaaaactataaaatggcaaataaga
cccagttaaatgtaaaatgtctgggtttcaaaaaccagaatagtaagatg
tcacctgatgcttctgggtgtgtctgagagaaggttccagacaagactat
tgtgtgacttggagtactgagtagggcagacatgccctggatgtgggcag
tcaccatccaattggtgggaagttcagacataaaaggtcagaaaaagaag
ggaaattgtctttgttatcccaattacagagaggtgtgatttactgttgc
tgccacctcaatggctgactttggacatcatactccaggttggttgaact
ctagaccctgctgcttgcaacagcagccctcactaaccctaaccctttga
ccacagtctgatggttacaatgctggcttcctgggtactgagacttctgg
acatgatccaagttgcacgtgtagtttttcctgatcctcaaaacctcttt
tttgggttctgatagtctctcatgaagcttgtcctcatctgtgattgcct
gacttcttctaatcaaaacatacatacaacagcacacatgcacataaatg
tgtggatcctccattggttctgtttctggagacccttggctagcacacta
tactagtctttgactgatctatatattcaatgctaccactctcacaatac
caactgcttt
gaattcagagtaagtgtgtggagcaaacctgttctcgtggagtggagtgt
aggctatgaagccagaaaagaaggcaattggaatctatcacacaccagct
tctctccctgctaagcccaatcagaggccataaagaaaggatatcctact
gggtctagcatggctgcataaggataggtgtgacacagttcctgcccctg
gagtattgctaggccattgatccccatgatcccccatgtgtgctgatgag
tgctcttgccctggaactgatctgttgtcttttctattttacttttaatc
tctctttttggggaatacacttcccctattactcagagctaatcattccg
taataaatgaaacagatatagttctcaggaatgaggaatggaggtggtta
tgaggctgtggaggacaaggaacaagtcttctgcttggcctttaaggcca
tgggaaaggatctagataacaaccgcagaggtcataaaaacctacatggt
cctttgtagaaatagttcattgccagacttggtctcgaatttgaaatcat
gaggagatacatgtaaccttccagtgcaatgactgctgcattaattaacc
agggtgaacttggggacattaaagatagttaaagtttgcctcaagaagaa
aaggtataggtaagaaaagaaggaatatagaaaacaagcaaatgatagat
gggtttattttataggataaaggcttgtatacgacttagaaataaatagt
atcagaagaagagtgtatgagggcatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97409777_97410634
seq2: B6Ng01-080A13.b_42_901

seq1  GAATTCTAAGTTTTCTCTGGACAACTGAGCAGGAAACACAGTCAAGGGTA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCTAAGTTTTCTCTGGACAACTGAGCATGAAACACAGTCAAGGGTA  50

seq1  TTGTGATCAGTAGGGAAGTAGTAAAATTCCCATCCTTGAGCAATCTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCAGTAGGGAAGTAGTAAAATTCCCATCCTTGAGCAATCTACTC  100

seq1  TGAAACACCCTGAGCAAGGGTGCAGGGTATTAAATCAACACATAGAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACCCTGAGCAAGGGTGCAGGGTATTAAATCAACACATAGAATTG  150

seq1  AACTGTTTTTCTCTGTAGTTTCAGCATACCTGGAAATGAAGATGGTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTTTCTCTGTAGTTTCAGCATACCTGGAAATGAAGATGGTAATA  200

seq1  TCACAGCAGCATCGGAGGAAACAGAAAACAAAACTGGAAATGTGCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAGCATCGGAGGAAACAGAAAACAAAACTGGAAATGTGCTTTTC  250

seq1  AAAAGAAATACAAGACACACATCATGAAAACTATAAAATGGCAAATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATACAAGACACACATCATGAAAACTATAAAATGGCAAATAAGA  300

seq1  CCCAGTTAAATGTAAAATGTCTGGGTTTCAAAAACCAGAATAGTAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTAAATGTAAAATGTCTGGGTTTCAAAAACCAGAATAGTAAGATG  350

seq1  TCACCTGATGCTTCTGGGTGTGTCTGAGAGAAGGTTCCAGACAAGACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGATGCTTCTGGGTGTGTCTGAGAGAAGGTTCCAGACAAGACTAT  400

seq1  TGTGTGACTTGGAGTACTGAGTAGGGCAGACATGCCCTGGATGTGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTTGGAGTACTGAGTAGGGCAGACATGCCCTGGATGTGGGCAG  450

seq1  TCACCATCCAATTGGTGGGAAGTTCAGACATAAAAGGTCAGAAAAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCCAATTGGTGGGAAGTTCAGACATAAAAGGTCAGAAAAAGAAG  500

seq1  GGAAATTGTCTTTGTTATCCCAATTACAGAGAGGTGTGATTTACTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGTCTTTGTTATCCCAATTACAGAGAGGTGTGATTTACTGTTGC  550

seq1  TGCCACCTCAATGGCTGACTTTGGACATCATACTCCAGGTTGGTTGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTCAATGGCTGACTTTGGACATCATACTCCAGGTTGGTTGAACT  600

seq1  CTAGACCCTGCTGCTTGCAACAGCAGCCCTCACTAACCCTAACCCTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCCTGCTGCTTGCAACAGCAGCCCTCACTAACCCTAACCCTTTGA  650

seq1  CCACAGTCTGATGGTTACAATGCTGGCTTCCTGGGTACTGAGACTTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCTGATGGTTACAATGCTGGCTTCCTGGGTACTGAGACTTCTGG  700

seq1  ACATGATCCAAGTTGCACGTGTAG-TTTTCCTGATCCTCAAAACCTCTTT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACATGATCCAAGTTGCACGTGTAGTTTTTCCTGATCCTCAAAACCTCTTT  750

seq1  TTT-GGTTCTGATAGTCTCTCATGAAGCTTGTCCTCATCTGTGATTGCCT  798
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTCTGATAGTCTCTCATGAAGCTTGTCCTCATCTGTGATTGCCT  800

seq1  GACTTCTTCTAATCAAAACATACATACAACAGCACACATGCACATAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTCTAATCAAAACATACATACAACAGCACACATGCACATAAATG  850

seq1  TGTGGATCCT  858
      ||||||||||
seq2  TGTGGATCCT  860

seq1: chr16_97600287_97601065
seq2: B6Ng01-080A13.g_69_848 (reverse)

seq1  TTCCATGCCCTCATACACTCTTCTTCTAATACTATTTATTTCTAAGTTGT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TTCCATGCCCTCATACACTCTTCTTCTGATACTATTTATTTCTAAGTCGT  50

seq1  ATACAAGCCTTTATCCTATAAAATAAACCCATCTATCATTTGCTTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCCTTTATCCTATAAAATAAACCCATCTATCATTTGCTTGTTTT  100

seq1  CTATATTCCTTCTTTTCTTACCTATACCTTTTCTTCTTGA-GCAAACTTT  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTATATTCCTTCTTTTCTTACCTATACCTTTTCTTCTTGAGGCAAACTTT  150

seq1  AACTATCTTTAATGTCCCCAAGTTCACCCTGGTTAATTAATGCAGCAGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTTTAATGTCCCCAAGTTCACCCTGGTTAATTAATGCAGCAGTC  200

seq1  ATTGCACTGGAAGGTTACATGTATCTCCTCATGATTTCAAATTCGAGACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACTGGAAGGTTACATGTATCTCCTCATGATTTCAAATTCGAGACC  250

seq1  AAGTCTGGCAATGAACTATTTCTACAAAGGACCATGTAGGTTTTTATGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGCAATGAACTATTTCTACAAAGGACCATGTAGGTTTTTATGAC  300

seq1  CTCTGCGGTTGTTATCTAGATCCTTTCCCATGGCCTTAAAGGCCAAGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCGGTTGTTATCTAGATCCTTTCCCATGGCCTTAAAGGCCAAGCAG  350

seq1  AAGACTTGTTCCTTGTCCTCCACAGCCTCATAACCACCTCCATTCCTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGTTCCTTGTCCTCCACAGCCTCATAACCACCTCCATTCCTCAT  400

seq1  TCCTGAGAACTATATCTGTTTCATTTATTACGGAATGATTAGCTCTGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAACTATATCTGTTTCATTTATTACGGAATGATTAGCTCTGAGT  450

seq1  AATAGGGGAAGTGTATTCCCCAAAAAGAGAGATTAAAAGTAAAATAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGAAGTGTATTCCCCAAAAAGAGAGATTAAAAGTAAAATAGAAA  500

seq1  AGACAACAGATCAGTTCCAGGGCAAGAGCACTCATCAGCACACATGGGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGATCAGTTCCAGGGCAAGAGCACTCATCAGCACACATGGGGG  550

seq1  ATCATGGGGATCAATGGCCTAGCAATACTCCAGGGGCAGGAACTGTGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGGATCAATGGCCTAGCAATACTCCAGGGGCAGGAACTGTGTCA  600

seq1  CACCTATCCTTATGCAGCCATGCTAGACCCAGTAGGATATCCTTTCTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATCCTTATGCAGCCATGCTAGACCCAGTAGGATATCCTTTCTTTA  650

seq1  TGGCCTCTGATTGGGCTTAGCAGGGAGAGAAGCTGGTGTGTGATAGATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTGATTGGGCTTAGCAGGGAGAGAAGCTGGTGTGTGATAGATTC  700

seq1  CAATTGCCTTCTTTTCTGGCTTCATAGCCTACACTCCACTCCACGAGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCCTTCTTTTCTGGCTTCATAGCCTACACTCCACTCCACGAGAAC  750

seq1  AGGTTTGCTCCACACTCTAGCTCTGAATTC  779
      ||||||||||||||| ||  ||||||||||
seq2  AGGTTTGCTCCACACACTTACTCTGAATTC  780