BAC Information

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BAC

Clone NameB6Ng01-080E20
Chromosome6 (Build37)16 (Build37)
Map Location 67,324,576 - 67,324,73478,295,603 - 78,295,851
singlet/doubletsingletsinglet
Overlap geneIl12rb2
Upstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1
Downstream geneLOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080E20.bB6Ng01-080E20.g
ACCDH895478DH895479
length1,063249
definitionDH895478|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E20, 5' end.DH895479|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,324,576 - 67,324,734)(78,295,603 - 78,295,851)
sequence
gaattctcactagaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcagatcaaaacaaccctgagat
tccacctcacaccagtcacaatggctaagatcaaaaattaaggtgacagc
agatgctggcgaggatgtggagaaagagaaacactcctccattgttggta
ggattgcaagcttatacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaaaatgttccaaccggtaagatggacacatgctctactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaatgcatgaaactcaa
aaagaaggaagaccaatgtgtagatactttgccccttctttagaattggg
aacaaaacacccatggaaggagttacagagacaaaatttggagctgtgac
gaaaggatggaccatctagagactgccatatccccacatccatcccataa
tcagcttccaaatgctgacaccattgcatacactagcaagatattgctga
aaggacccagatatggctgtctcttgtgaggtatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggaacacagggccccc
aatggaggagatagagaaagtaccccaggagcaaagggaactgcaacact
aataggtggaacacattataactaaccagtaccccgagctcttgactcta
gctgcaatgtatc
agtactaaattgctgcccaaaacaatcaaacaactctgtctctgtctctc
tcacacacatgtatgtacacacacacatgcacacacaaatcgatgtaact
tatagacttagtcagtaaattctgataaattctgacaaaatcaataaacg
tgtccatttgtgctccaggtatggtgtattcacagagagagagagagaga
gagagagagagagagagagagagagagagaaggaaggtggggaagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67324576_67324734
seq2: B6Ng01-080E20.b_711_1077 (reverse)

seq1  GGTACTGGTTAGTTCATAATGTTGTTCCACCTA-TAGGGTTGCAGATCCC  49
      |||||||||||||| |||||| ||||||||||| ||| ||||||| ||||
seq2  GGTACTGGTTAGTT-ATAATG-TGTTCCACCTATTAGTGTTGCAGTTCCC  48

seq1  TTTAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGAGCCCTGTGAT  99
      ||| |||||| |||| ||||||||| || |||||||||| |||||||| |
seq2  TTT-GCTCCTGGGGTACTTTCTCTATCTCCTCCATTGGGGGCCCTGTGTT  97

seq1  CCATCCAATAGCTGACTGTGAGCATTGCCCATTGC--AATTCTAAAGGGA  147
      |||||||||||||||||||||||||   ||| | |    ||    |||  
seq2  CCATCCAATAGCTGACTGTGAGCAT---CCACTTCTGTGTTTGCTAGGCC  144

seq1  CTAGTCTA---CACA-----------------------------------  159
      |  |  ||   ||||                                   
seq2  CCGGCATACCTCACAAGAGACAGCCATATCTGGGTCCTTTCAGCAATATC  194

seq1  --------------------------------------------------  159
                                                        
seq2  TTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATTATGGGATGG  244

seq1  --------------------------------------------------  159
                                                        
seq2  ATGTGGGGATATGGCAGTCTCTAGATGGTCCATCCTTTCGTCACAGCTCC  294

seq1  --------------------------------------------------  159
                                                        
seq2  AAATTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAA  344

seq1  -----------------------  159
                             
seq2  AGAAGGGGCAAAGTATCTACACA  367

seq1: chr16_78295603_78295851
seq2: B6Ng01-080E20.g_74_322 (reverse)

seq1  CTTTCTTCCCCACCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCCCACCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTCTGTGAATACACCATACCTGGAGCACAAATGGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTGTGAATACACCATACCTGGAGCACAAATGGACAC  100

seq1  GTTTATTGATTTTGTCAGAATTTATCAGAATTTACTGACTAAGTCTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGATTTTGTCAGAATTTATCAGAATTTACTGACTAAGTCTATAA  150

seq1  GTTACATCGATTTGTGTGTGCATGTGTGTGTGTACATACATGTGTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATCGATTTGTGTGTGCATGTGTGTGTGTACATACATGTGTGTGAG  200

seq1  AGAGACAGAGACAGAGTTGTTTGATTGTTTTGGGCAGCAATTTAGTACT  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGTTGTTTGATTGTTTTGGGCAGCAATTTAGTACT  249