BAC Information

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BAC

Clone NameB6Ng01-080F16
Chromosome16 (Build37)Y (Build37)
Map Location 37,096,476 - 37,097,3301,870,481 - 1,870,574
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCsta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F16.bB6Ng01-080F16.g
ACCDH895517DH895518
length1,167197
definitionDH895517|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F16, 5' end.DH895518|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,096,476 - 37,097,330)(1,870,481 - 1,870,574)
sequence
gaattcaagacatttaaagaaaaaacaactcggcaacctcagagagaatg
agcaaaagagaaaaatgcctgacagatctttaagaaaacacaaagataag
tttgattaaaatgacaaggataatccaggagttgaaagctgaattatact
cggcaacccgcagaagcttctctaacatagacctcatattgagacgcaaa
aactcagtagactgaaataagacattacactctatctggccacaatacaa
taataattaagatcgacagcaaacaaacctctggtaagcacacaaactca
aagagttaactttgctaaatgatgagtggggcaaagaacaatgtcaattt
ttaaaatcccagaactaaatgaaaacacaacaaaacctctggacacatta
acatcattcttacaagagaaatttatagctctaagtgcctacattaaaaa
tacagaaagagcacaaatgaatgacttataaataatgtaactctaaattt
ggaaatgcaggaacaagcaaagccaaaactcagtagacagcatgaaataa
aaaaaaaaaaaaggcagaaattaatgaactggaaataaagaagacaatat
aaagaattaacaaatctaatatcagactctttgagaagaaaaacaagact
ggggctggagagatggctcagtggttaagagcactgactgctcttccgta
gactctgagttcaaatcccaacaaccacatggtggcttacagccatccgt
aatgagatctgacaaccctcttctggggtgtctgaagacagctacagtct
acttagatataataataaataaatcttcaggccagagcgagtggggcaga
ctggagtgagcagaggtcctgaattcaaattcccagcaaccacatgatgg
ctcacaaccatgagtacaactacaatgtactcatatacataaagaaataa
atctttttaaaaaaagaaataaacagactgatagacactttcctcactac
tgaaaggaagagaacacttacctaatgaagagaatcacaatgacaggatc
tctagtcccttcttctactgtgggggcatctcatctggggagtcaggact
gggagtctgggagtcttctcacctccaagtctctggtgcactctggggaa
tcccccacctcaatttc
agtttgtaggtattttcattgaaagaaaatttatctatgtttattaggga
gtttgatccatgtttgtgcctttatttggttttcatatcaatggcttcat
ataaaagagaggcccattggacacgcaaactttatatgccccagtacagg
ggaacgccagggccaaaaagggggagtgggtgggtaagggagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37096476_37097330
seq2: B6Ng01-080F16.b_377_1214

seq1  GGCAAAGAACAATGTCAATTTTTAAAATCCCAGAACTAAATGAAAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGAACAATGTCAATTTTTAAAATCCCAGAACTAAATGAAAACACA  50

seq1  ACAAAACCTCTGGACACATTAACATCATTCTTACAAGAGAAATTTATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCTCTGGACACATTAACATCATTCTTACAAGAGAAATTTATAGC  100

seq1  TCTAAGTGCCTACATTAAAAATACAGAAAGAGCACAAATGAATGACTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGCCTACATTAAAAATACAGAAAGAGCACAAATGAATGACTTAT  150

seq1  AAATAATGTAACTCTAAATTTGGAAATGCAGGAACAAGCAAAGCCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTAACTCTAAATTTGGAAATGCAGGAACAAGCAAAGCCAAAAC  200

seq1  TCAGTAGACAGCATGAAATAAAAAAAAAAAAAAGGCAGAAATTAATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGACAGCATGAAATAAAAAAAAAAAAAAGGCAGAAATTAATGAAC  250

seq1  TGGAAATAAAGAAGACAATATAAAGAATTAACAAATCTAATATCAGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAAGAAGACAATATAAAGAATTAACAAATCTAATATCAGACTC  300

seq1  TTTGAGAAGAAAAACAAGACTGGGGCTGGAGAGATGGCTCAGTGGTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAGAAAAACAAGACTGGGGCTGGAGAGATGGCTCAGTGGTTAAG  350

seq1  AGCACTGACTGCTCTTCCGTAGACTCTGAGTTCAAATCCCAACAACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTGCTCTTCCGTAGACTCTGAGTTCAAATCCCAACAACCACA  400

seq1  TGGTGGCTTACAGCCATCCGTAATGAGATCTGACAACCCTCTTCTGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTTACAGCCATCCGTAATGAGATCTGACAACCCTCTTCTGGGGT  450

seq1  GTCTGAAGACAGCTACAGTCTACTTAGATATAATAATAAATAAATCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACAGCTACAGTCTACTTAGATATAATAATAAATAAATCTTCA  500

seq1  GGCCAGAGCGAGTGGGGCAGACTGGAGTGAGCAGAGGTCCTGAATTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGCGAGTGGGGCAGACTGGAGTGAGCAGAGGTCCTGAATTCAAA  550

seq1  TTCCCAGCAACCACATGATGGCTCACAACCATGAGTACAACTACAATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCAACCACATGATGGCTCACAACCATGAGTACAACTACAATGTA  600

seq1  CTCATATACATAAAGAAATAAATCTTTTTTAAAAAAAGAAATAAAACAAG  650
      |||||||||||||||||||||||| ||||||||||||||||||||   ||
seq2  CTCATATACATAAAGAAATAAATC-TTTTTAAAAAAAGAAATAAA--CAG  647

seq1  ACTGATAGACACTTTCCTCAACTAACTGAAAGGAAGAGAACACCTAACCT  700
      ||||||||||||||||||| ||| |||||||||||||||||| || ||||
seq2  ACTGATAGACACTTTCCTC-ACT-ACTGAAAGGAAGAGAACA-CTTACCT  694

seq1  AAATGAAGAGAATCACAAATGAACAGGGATCTCTAAGTCCCTTCTTCCTA  750
       ||||||||||||||| |||| ||| |||||||| ||||||||||| |||
seq2  -AATGAAGAGAATCAC-AATG-ACA-GGATCTCT-AGTCCCTTCTT-CTA  738

seq1  CTGT-GGGGCATCTCATCCTGGGAGTCCAGGACCTGGGAGTCCTGGGAGT  799
      |||| |||||||||||||  |||||| ||||| |||||||| ||||||||
seq2  CTGTGGGGGCATCTCATCTGGGGAGT-CAGGA-CTGGGAGT-CTGGGAGT  785

seq1  C-TCTCACCTCCCAGGTCTCTGGTGCACTCTGGGGGATCCCCCCAACCTC  848
      | |||||||| ||| |||||||||||||||||||| |||||||  |||| 
seq2  CTTCTCACCT-CCAAGTCTCTGGTGCACTCTGGGGAATCCCCC--ACCT-  831

seq1  CTATTTC  855
      | |||||
seq2  CAATTTC  838

seq1: chrY_1870481_1870574
seq2: B6Ng01-080F16.g_177_270

seq1  AAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGA  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGA  50

seq1  ACGCCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGAGTGGGG  94
      |||||||||||||||||||| |||||||||||| ||||||||||
seq2  ACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAAGGGAGTGGGG  94