BAC Information

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BAC

Clone NameB6Ng01-080I09
Chromosome16 (Build37)
Map Location 52,637,997 - 52,800,739
singlet/doubletdoublet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080I09.bB6Ng01-080I09.g
ACCDH895639DH895640
length1,160781
definitionDH895639|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I09, 5' end.DH895640|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,799,572 - 52,800,739)(52,637,997 - 52,638,773)
sequence
gaattcagaatgcataatagtgtaaaagagacagtgctgggatgcatgaa
tttttccttaattgacgactcttttcctgtacttcatgcggtatccaggc
cctgccgatacttggcatggaaaggcagaaatcaatgaggtttaatttat
gaaaagccacaatcagagtggctttagaatatgattttgggcactttaac
tatcttgcaaataccactagcatcggagaaagaaaaccacacagctcaca
ggcataatgtaaggactacataagagaactttgtgactgatgaatgtcag
gggccacctagtcctgccatgactatcaaaagaaactgtgtggttggcaa
gttcgtatggtttaatgaaaagaggaatgtgagtaggaagggtaagtgac
aaagtgtaagggaagactgagtgggcaacagatctctgtaggaagccaca
ggaaagctaggactgccacatacaagatcacatctataactccaactgaa
caatacagatggagtaaagaagctattcacaatctctgagaacgttagaa
aagagatcagtgccctagagctaaataatagggactttgaacttacattt
aggggcaaaacattttttctttctttcttttttcttttagttctttgaac
acctgcacagttggattaactcccacaggaagttcatgaatggatcttac
cgtgcacatcctaggagaggtcagagatggcagccgccaccccaggggac
tgagattcacagagggaagacacatctatacagtcttactgtaaataagc
actgtgacttctaaaacagaattgcaaacatttatttgttaaataaattg
catttctgatcttcagtgcctttggaaattacagcttagaatggttgctc
cttataagagggcatgcattatgattggacaaaagaagataaaagcaagc
atgattggaaaccatgcctattctctgtcactgtagtttttgaaggatac
agctattaccacctcggctcaatataatgactggatccctaatcaaatcc
atcctctggtgtaacatgttttttcattctctgaattcctctgtaaaata
aaacaagcaagctaacaaaacacattgagcaaatgtctgctgagataaat
tgcttgctaa
gaattcttttctctttgccccttgttgtagcatctttcctatggaatgta
tggcaaaacaaagtgatttgagtagactggtcttcaacgcagatgttgga
caatgttttgtatatatatagtttgtgtgtatatatagttttatatggtc
ttgtgagaatgaaagagagaacggtaagaagaaaattgtcatctttggaa
aatcagtgatgtcccctgtagttcttctgagatggagggctggaggactt
ggcataaggttattttatgcaccatcactgtggcatatcagcattaaaat
gatgtggaccatccattggggtaaacccacaagaagaagaggaaggtaaa
agacctaatgaagaagagctggctttgtgtcctagcagtttctaatctac
tttctttgttctcttctatcttgcagcatttctacatcacactctatgtg
gctacaatcatccatcattctttgcgtgtttgcttttcaagtctagtcag
aggtgaacgagatcgtgctcttttggcgagctgcggcactattactttta
gaaagcaggtgggaagctcagtgggaacaaaatgtcatgcagtttgaccc
caccacctcggagaagacctttagcttttagacagctgtcatatatagtt
catcggaaggtagaacagacgttaggtgatcctgctcttaaaatcagtat
ggaagcccagaatgacaactctggaaaagttacttttaacttagctttct
acttcacacttagcttctacactagtttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52799572_52800739
seq2: B6Ng01-080I09.b_48_1207 (reverse)

seq1  TTAGCAAGCAAATATTACTCAGCAGAACATTTTGCTCAATTGTGTTTTTG  50
      ||||||||| ||| |  |||||||| ||| ||||||||| |||| |||||
seq2  TTAGCAAGC-AATTTATCTCAGCAG-ACA-TTTGCTCAA-TGTG-TTTTG  45

seq1  TTTGCTTGCTTGTTTTATTTTTACAGAGGACATCAGAGAATG-AAAAACA  99
      || |||||||||||||| ||||||||||||  |||||||||| |||||||
seq2  TTAGCTTGCTTGTTTTA-TTTTACAGAGGAATTCAGAGAATGAAAAAACA  94

seq1  TGTTACACAGGAGAATGGATTTTGATTAGGGATCCAGTCATAGTATTGAA  149
      ||||||||  ||| ||||| |||||||||||||||||||||  |||||| 
seq2  TGTTACACCAGAGGATGGA-TTTGATTAGGGATCCAGTCATTATATTGAG  143

seq1  GCGAGGTGGTATTAGGCTGTAT-CTTCAAAAACTACAGTGTACAGAGCAA  198
       |||||||||| || ||||||| ||||||||||||||||| |||||| ||
seq2  CCGAGGTGGTAATA-GCTGTATCCTTCAAAAACTACAGTG-ACAGAG-AA  190

seq1  TAGGCATGGTTTCCAATCATGCTTGCTTTTATCTTCTTTTGTCCAATCCT  248
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGGCATGGTTTCCAATCATGCTTGCTTTTATCTTCTTTTGTCCAATCAT  240

seq1  AATGCATGCCCTCTTATAAGGAGCAACCATTCTAAGCTGTAATTTCCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGCCCTCTTATAAGGAGCAACCATTCTAAGCTGTAATTTCCAAA  290

seq1  GGCACTGAAGATCAGAAATGCAATTTATTTAACAAATAAATGTTTGCAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGAAGATCAGAAATGCAATTTATTTAACAAATAAATGTTTGCAAT  340

seq1  TCTGTTTTAGAAGTCACAGTGCTTATTTACAGTAAGACTGTATAGATGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTAGAAGTCACAGTGCTTATTTACAGTAAGACTGTATAGATGTG  390

seq1  TCTTCCCTCTGTGAATCTCAGTCCCCTGGGGTGGCGGCTGCCATCTCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCTGTGAATCTCAGTCCCCTGGGGTGGCGGCTGCCATCTCTGA  440

seq1  CCTCTCCTAGGATGTGCACGGTAAGATCCATTCATGAACTTCCTGTGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTAGGATGTGCACGGTAAGATCCATTCATGAACTTCCTGTGGGA  490

seq1  GTTAATCCAACTGTGCAGGTGTTCAAAGAACTAAAAGAAAAAAGAAAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCCAACTGTGCAGGTGTTCAAAGAACTAAAAGAAAAAAGAAAGAA  540

seq1  AGAAAAAATGTTTTGCCCCTAAATGTAAGTTCAAAGTCCCTATTATTTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATGTTTTGCCCCTAAATGTAAGTTCAAAGTCCCTATTATTTAG  590

seq1  CTCTAGGGCACTGATCTCTTTTCTAACGTTCTCAGAGATTGTGAATAGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGCACTGATCTCTTTTCTAACGTTCTCAGAGATTGTGAATAGCT  640

seq1  TCTTTACTCCATCTGTATTGTTCAGTTGGAGTTATAGATGTGATCTTGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTCCATCTGTATTGTTCAGTTGGAGTTATAGATGTGATCTTGTA  690

seq1  TGTGGCAGTCCTAGCTTTCCTGTGGCTTCCTACAGAGATCTGTTGCCCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGTCCTAGCTTTCCTGTGGCTTCCTACAGAGATCTGTTGCCCAC  740

seq1  TCAGTCTTCCCTTACACTTTGTCACTTACCCTTCCTACTCACATTCCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCCCTTACACTTTGTCACTTACCCTTCCTACTCACATTCCTCT  790

seq1  TTTCATTAAACCATACGAACTTGCCAACCACACAGTTTCTTTTGATAGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAACCATACGAACTTGCCAACCACACAGTTTCTTTTGATAGTC  840

seq1  ATGGCAGGACTAGGTGGCCCCTGACATTCATCAGTCACAAAGTTCTCTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGACTAGGTGGCCCCTGACATTCATCAGTCACAAAGTTCTCTTA  890

seq1  TGTAGTCCTTACATTATGCCTGTGAGCTGTGTGGTTTTCTTTCTCCGATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCTTACATTATGCCTGTGAGCTGTGTGGTTTTCTTTCTCCGATG  940

seq1  CTAGTGGTATTTGCAAGATAGTTAAAGTGCCCAAAATCATATTCTAAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGTATTTGCAAGATAGTTAAAGTGCCCAAAATCATATTCTAAAGC  990

seq1  CACTCTGATTGTGGCTTTTCATAAATTAAACCTCATTGATTTCTGCCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGATTGTGGCTTTTCATAAATTAAACCTCATTGATTTCTGCCTTT  1040

seq1  CCATGCCAAGTATCGGCAGGGCCTGGATACCGCATGAAGTACAGGAAAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAAGTATCGGCAGGGCCTGGATACCGCATGAAGTACAGGAAAAG  1090

seq1  AGTCGTCAATTAAGGAAAAATTCATGCATCCCAGCACTGTCTCTTTTACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCAATTAAGGAAAAATTCATGCATCCCAGCACTGTCTCTTTTACA  1140

seq1  CTATTATGCATTCTGAATTC  1168
      ||||||||||||||||||||
seq2  CTATTATGCATTCTGAATTC  1160

seq1: chr16_52637997_52638773
seq2: B6Ng01-080I09.g_69_849

seq1  GAATTCTTTTCTCTTTGCCCCTTGTTGTAGCATCTTTCCTATGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCTTTGCCCCTTGTTGTAGCATCTTTCCTATGGAATGTA  50

seq1  TGGCAAAACAAAGTGATTTGAGTAGACTGGTCTTCAACGCAGATGTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACAAAGTGATTTGAGTAGACTGGTCTTCAACGCAGATGTTGGA  100

seq1  CAATGTTTTGTATATATATAGTTTGTGTGTATATATAGTTTTATATGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTTGTATATATATAGTTTGTGTGTATATATAGTTTTATATGGTC  150

seq1  TTGTGAGAATGAAAGAGAGAACGGTAAGAAGAAAATTGTCATCTTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAATGAAAGAGAGAACGGTAAGAAGAAAATTGTCATCTTTGGAA  200

seq1  AATCAGTGATGTCCCCTGTAGTTCTTCTGAGATGGAGGGCTGGAGGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGATGTCCCCTGTAGTTCTTCTGAGATGGAGGGCTGGAGGACTT  250

seq1  GGCATAAGGTTATTTTATGCACCATCACTGTGGCATATCAGCATTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGGTTATTTTATGCACCATCACTGTGGCATATCAGCATTAAAAT  300

seq1  GATGTGGACCATCCATTGGGGTAAACCCACAAGAAGAAGAGGAAGGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGACCATCCATTGGGGTAAACCCACAAGAAGAAGAGGAAGGTAAA  350

seq1  AGACCTAATGAAGAAGAGCTGGCTTTGTGTCCTAGCAGTTTCTAATCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAATGAAGAAGAGCTGGCTTTGTGTCCTAGCAGTTTCTAATCTAC  400

seq1  TTTCTTTGTTCTCTTCTATCTTGCAGCATTTCTACATCACACTCTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTCTCTTCTATCTTGCAGCATTTCTACATCACACTCTATGTG  450

seq1  GCTACAATCATCCATCATTCTTTGCGTGTTTGCTTTTCAAGTCTAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATCATCCATCATTCTTTGCGTGTTTGCTTTTCAAGTCTAGTCAG  500

seq1  AGGTGAACGAGATCGTGCTCTTTTGGCGAGCTGCGGCACTATTACTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACGAGATCGTGCTCTTTTGGCGAGCTGCGGCACTATTACTTTTA  550

seq1  GAAAGCAGGTGGGAAGCTCAGTGGGAACAAAATGTCATGCAGTTTGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGGTGGGAAGCTCAGTGGGAACAAAATGTCATGCAGTTTGACCC  600

seq1  CACCACCTCGGAGAAGACCTTTAGC-TTTAGACAGCTGTCATATATAGTT  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACCACCTCGGAGAAGACCTTTAGCTTTTAGACAGCTGTCATATATAGTT  650

seq1  CATCGGAAGGTAGAACAGACGTTAGGTGATCCTGCTCTTAAAATCAGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGAAGGTAGAACAGACGTTAGGTGATCCTGCTCTTAAAATCAGTAT  700

seq1  GGAAGCCCAGAATGACAACGCTGGAAAAGTTAC-TTTAACTTAGC-TTCT  747
      ||||||||||||||||||| ||||||||||||| ||||||||||| ||||
seq2  GGAAGCCCAGAATGACAACTCTGGAAAAGTTACTTTTAACTTAGCTTTCT  750

seq1  ACTTCACACTTAGC-TCTACACTAGTTTCCT  777
      |||||||||||||| ||||||||||||||||
seq2  ACTTCACACTTAGCTTCTACACTAGTTTCCT  781