BAC Information

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BAC

Clone NameB6Ng01-080K01
Chromosome16 (Build37)
Map Location 10,414,296 - 10,549,264
singlet/doubletdoublet
Overlap geneNubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5
Downstream geneSocs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080K01.bB6Ng01-080K01.g
ACCDH895711DH895712
length1,1641,197
definitionDH895711|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K01, 5' end.DH895712|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,414,296 - 10,415,473)(10,548,065 - 10,549,264)
sequence
gaattccctcaccaggccatgtgacacaagcttgtaatctcagcatttca
gagcaggaagcttttacattcaaggctagccatggctacaaagtgagacc
ctgcctcataacagacagacttactcagattcccagttctgtgctctggg
ttccagctttaggaaaggtgtggtagccaggagcagtgcaggttctgtct
agtgctgtccacatcactgctgatgccctggctggttaccaggccctctc
tctgcctccattttctcatctataaaatgggtctcagaggcctgggtgag
aggctgccattacggtgcaagcacagtgcctaccacacagtccgagtcct
ggcaatgccctggcagccatcttcattaccagtgcacgttgctgcctgga
gttcagagggtgattgcttttagagttgtgttgcagcctgcccagcccac
agcacagggcaggttaagtgtgttcatctgttcattgttctgttggggga
cagtctcttgccaccagagggttaaatttgcattgcccagtacagtggaa
cctttttttattgcagtctgcattttttataaggcgcgggggctggagct
gtgggctggagtagtggagctttgtctaacaagtgcaaggcccctgcttc
atccccagaagcagctccccctccccccactaacatcaagaacaacaaac
cctaaaaacaacaaaaacggatggtgtttggtccagaataagcgtgtgct
ctagaactgttaggaatagtcttagctgtgtaacaccagcatgaggagct
gctcgcatgccttcttccagacaagagagtctcgccaattgcttgtaagg
gcctttcagtatgcagtccagtggagacaggacctgcaaaaagatgaaga
gctggccgagctggcttcacctgcagtcttggcgctcaagaggactgcca
gagtcccagccagtctggggcgacagagtgagtctgtctcaataacgaaa
gcatcctgtgggcaagccccaatccccgggtgtctgcagtgcagtgtaga
tgcagtgaccattgattcggctattggaggttcgaagcacatatctctcg
gccttcagctgcttctgttgtccatgaatgctgaacctagctggcttagt
tgatgcgtgcatct
gaattctgggctttagttcatttcagatggcctgtgccccaagttgaaag
ggaccttctggaactctggcaagcaaaggcaatctgtaacagggactgga
gtaggatgacacagcatgggtgagagtaacacaagctttaaagagaaaag
gagcttcgttcccatttgcatggctaagctgacacagtggtgcccagaac
ctgctgagaatgagaccagaagaaaggaggcagcttcgtctaactaagca
cccgctctctgctatggtgtagctagaacacaccgttcagttacaagagc
tatccaatagactccaccagctcagaaggcaatttagcaggatcatcact
tggaccaagaatcttgacatcatcaagtgactagaattgagacaacaaca
taacaaccaaggttctatcagtttgtgggcaaatggccccctttccaaat
gacatttcagtaacaatcaaaggactctataagtagagattctgctgagg
gtagacatttgtcagttaatgtcacagccttgttactagtctggcagtga
accatcaatgatgtgtcatgaataacaacctgactgttccatctgtcccc
aactaagtgactgaccaaacttggtatgtaaataattcaagtacagcttt
tcactatttagcaaaaagtgtgtaacagaaaagtttctttccagtttgta
agatggaagtgctgtgaaggaaagaatgccttataagcagtggtagggta
tagtgacacagtatgtgatacagacacattatgtctgtaattccagcact
caggagcagagaaagacttgttcccccttacacctctgtgaccctgaaga
aagaatataaaatcaacaactaaagaaccctactctcaatttttcttaaa
tcttaacctcttattcaccaagactgctacatcaggacaatgatgtcctg
agacaagcagggtgatgcatcctggggtctccctgatctagagactgcgg
caggagatgcatgaatgcacgcttcccttggccttgggttctggttaaag
gatctggggcccgttcagtcaacttagttaccggtaaggcaatctgctct
gctacactggcctttcttttcagtacgaaattccatgtttctagctccca
ccccacccgatcgtgacaacgttagggtgttcatgtggccccaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10414296_10415473
seq2: B6Ng01-080K01.b_41_1204

seq1  GAATTCCCTCACCAGGCCATGTGACACAAGCTTGTAATCTCAGCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCACCAGGCCATGTGACACAAGCTTGTAATCTCAGCATTTCA  50

seq1  GAGCAGGAAGCTTTTACATTCAAGGCTAGCCATGGCTACAAAGTGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAAGCTTTTACATTCAAGGCTAGCCATGGCTACAAAGTGAGACC  100

seq1  CTGCCTCATAACAGACAGACTTACTCAGATTCCCAGTTCTGTGCTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCATAACAGACAGACTTACTCAGATTCCCAGTTCTGTGCTCTGGG  150

seq1  TTCCAGCTTTAGGAAAGGTGTGGTAGCCAGGAGCAGTGCAGGTTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTTTAGGAAAGGTGTGGTAGCCAGGAGCAGTGCAGGTTCTGTCT  200

seq1  AGTGCTGTCCACATCACTGCTGATGCCCTGGCTGGTTACCAGGCCCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTCCACATCACTGCTGATGCCCTGGCTGGTTACCAGGCCCTCTC  250

seq1  TCTGCCTCCATTTTCTCATCTATAAAATGGGTCTCAGAGGCCTGGGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCATTTTCTCATCTATAAAATGGGTCTCAGAGGCCTGGGTGAG  300

seq1  AGGCTGCCATTACGGTGCAAGCACAGTGCCTACCACACAGTCCGAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCCATTACGGTGCAAGCACAGTGCCTACCACACAGTCCGAGTCCT  350

seq1  GGCAATGCCCTGGCAGCCATCTTCATTACCAGTGCACGTTGCTGCCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCCCTGGCAGCCATCTTCATTACCAGTGCACGTTGCTGCCTGGA  400

seq1  GTTCAGAGGGTGATTGCTTTTAGAGTTGTGTTGCAGCCTGCCCAGCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGGGTGATTGCTTTTAGAGTTGTGTTGCAGCCTGCCCAGCCCAC  450

seq1  AGCACAGGGCAGGTTAAGTGTGTTCATCTGTTCATTGTTCTGTTGGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGCAGGTTAAGTGTGTTCATCTGTTCATTGTTCTGTTGGGGGA  500

seq1  CAGTCTCTTGCCACCAGAGGGTTAAATTTGCATTGCCCAGTACAGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTTGCCACCAGAGGGTTAAATTTGCATTGCCCAGTACAGTGGAA  550

seq1  CCTTTTTTTATTGCAGTCTGCATTTTTTATAAGGCGCGGGGGCTGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTATTGCAGTCTGCATTTTTTATAAGGCGCGGGGGCTGGAGCT  600

seq1  GTGGGCTGGAGTAGTGGAGCTTTGTCTAACAAGTGCAAGGCCCCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGAGTAGTGGAGCTTTGTCTAACAAGTGCAAGGCCCCTGCTTC  650

seq1  ATCCCCAGAAGCAGCTCCCCCTCCCCCCACTAACATCAAGAACAACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGAAGCAGCTCCCCCTCCCCCCACTAACATCAAGAACAACAAAC  700

seq1  CCTAAAAACAACAAAAACGGATGGTGTTTGGTCCAGAATAAGCGTGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAACAACAAAAACGGATGGTGTTTGGTCCAGAATAAGCGTGTGCT  750

seq1  CTAGAACTGTTAGGAATAGTCTTAGCTGTGTAACACCAGCATGAGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTGTTAGGAATAGTCTTAGCTGTGTAACACCAGCATGAGGAGCT  800

seq1  GCTCGCATGCCTTCTTCCAGACAAGAGAGTCTCGCCAATTGCTTGTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCATGCCTTCTTCCAGACAAGAGAGTCTCGCCAATTGCTTGTAAGG  850

seq1  GCCTTTCAGTATGCAGTCCAGTGGAGACAGGACCTGCAAAAAAGATGAAG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCTTTCAGTATGCAGTCCAGTGGAGACAGGACCTGC-AAAAAGATGAAG  899

seq1  AGCTGGCCGAGCTGGCTTACACCTGCAGTCTTGGCGCTCAAGAGGACTGC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTGGCCGAGCTGGCTT-CACCTGCAGTCTTGGCGCTCAAGAGGACTGC  948

seq1  CAAGAGTCCCAGGCCAGTCT-GGGCGACAGAGTGAGTCTGTCTCAATAAC  999
      | ||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  C-AGAGTCCCA-GCCAGTCTGGGGCGACAGAGTGAGTCTGTCTCAATAAC  996

seq1  GAAAGCATCCTGTGGGCAAGCCCCCATTCCCCGGGTGTCTGCAGTGCAGT  1049
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  GAAAGCATCCTGTGGGCAAG-CCCCAATCCCCGGGTGTCTGCAGTGCAGT  1045

seq1  GTAGATGCAGTGAACATTGAATTCGGCTTATTGAGGGTCAGAAGCACAAT  1099
      ||||||||||||| ||||| ||||||| |||||  |||  ||||||| ||
seq2  GTAGATGCAGTGACCATTG-ATTCGGC-TATTGGAGGTTCGAAGCAC-AT  1092

seq1  ATCTC-CAGCCCTCAGGCTGCCTTCTGTGGTCCACTAGATGCCTGGCACT  1148
      ||||| | ||| ||| |||| ||||||| ||||| |  ||||   | || 
seq2  ATCTCTCGGCCTTCA-GCTG-CTTCTGTTGTCCA-TGAATGC--TGAACC  1137

seq1  CAGTCTGCTTCTAGTTGATGCGTGTCATCT  1178
       ||   |||  ||||||||||||| |||||
seq2  TAGCTGGCT--TAGTTGATGCGTG-CATCT  1164

seq1: chr16_10548065_10549264
seq2: B6Ng01-080K01.g_67_1263 (reverse)

seq1  ACATGGGGGCCA-ATGAACA-CCTAACGTTTGTCCAGTCTGGGGTGGGGG  48
      |||| ||||||| ||||||| ||||||| |||| ||   | |||||||| 
seq2  ACATTGGGGCCACATGAACACCCTAACG-TTGT-CACGATCGGGTGGGG-  47

seq1  TTGGGGAGC-AG-AACATGGGATTTTCCGTACTGAAACAGGAAAGCCAAG  96
         |||||| || ||||||| ||||  |||||||||  | ||||| | ||
seq2  --TGGGAGCTAGAAACATGGAATTT--CGTACTGAA--AAGAAAGGCCAG  91

seq1  TAAAGCAGAGCAGATCGCCTTCCCGGTTACTAAG-TGACTGA--CGGCCC  143
      |  |||||||||||| ||||| ||||| |||||| |||||||   |||||
seq2  TGTAGCAGAGCAGATTGCCTTACCGGTAACTAAGTTGACTGAACGGGCCC  141

seq1  CAGATCCTTTAAAACAG-ACCCAA-GCCAGGGAAAGCGTGCATTCATGCA  191
      |||||||||| || ||| |||||| |||| || |||||||||||||||||
seq2  CAGATCCTTT-AACCAGAACCCAAGGCCAAGGGAAGCGTGCATTCATGCA  190

seq1  TCTCCTGCCGCAGTCTCTAGATCAGGGAGA-CCCAGGATGCATCACCCTG  240
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTCCTGCCGCAGTCTCTAGATCAGGGAGACCCCAGGATGCATCACCCTG  240

seq1  CTGGTCTCCAGGACATCATTGTCCTGATGTAGCAGTCTTGGTGGAATAAG  290
      || |||| |||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGTCT-CAGGACATCATTGTCCTGATGTAGCAGTCTTGGT-GAATAAG  288

seq1  AGGTTAAGATTTTAAGAAAATTGAGAGTAGGGTTCTTTAGTTGTTGATTT  340
      |||||||||||| |  ||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGATTTAAGAAAAATTGAGAGTAGGGTTCTTTAGTTGTTGATTT  338

seq1  TATATTTCTTTCTTCAGGGTCACAGAGGTGTAAGGGGGAACAAGTCTTTC  390
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATA-TTCTTTCTTCAGGGTCACAGAGGTGTAAGGGGGAACAAGTCTTTC  387

seq1  TCTGCTCCTGAGTGCTGGAATTACAGACATAATGTGTCTGTATCACATAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCTGAGTGCTGGAATTACAGACATAATGTGTCTGTATCACATAC  437

seq1  TGTGTCACTATACCCTACCACTGCTTATAAGGCATTCTTTCCTTCACAGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACTATACCCTACCACTGCTTATAAGGCATTCTTTCCTTCACAGC  487

seq1  ACTTCCATCTTACAAACTGGAAAGAAACTTTTCTGTTACACACTTTTTGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATCTTACAAACTGGAAAGAAACTTTTCTGTTACACACTTTTTGC  537

seq1  TAAATAGTGAAAAGCTGTACTTGAATTATTTACATACCAAGTTTGGTCAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTGAAAAGCTGTACTTGAATTATTTACATACCAAGTTTGGTCAG  587

seq1  TCACTTAGTTGGGGACAGATGGAACAGTCAGGTTGTTATTCATGACACAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGTTGGGGACAGATGGAACAGTCAGGTTGTTATTCATGACACAT  637

seq1  CATTGATGGTTCACTGCCAGACTAGTAACAAGGCTGTGACATTAACTGAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGGTTCACTGCCAGACTAGTAACAAGGCTGTGACATTAACTGAC  687

seq1  AAATGTCTACCCTCAGCAGAATCTCTACTTATAGAGTCCTTTGATTGTTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTACCCTCAGCAGAATCTCTACTTATAGAGTCCTTTGATTGTTA  737

seq1  CTGAAATGTCATTTGGAAAGGGGGCCATTTGCCCACAAACTGATAGAACC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTCATTTGGAAAGGGGGCCATTTGCCCACAAACTGATAGAACC  787

seq1  TTGGTTGTTATGTTGTTGTCTCAATTCTAGTCACTTGATGATGTCAAGAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTATGTTGTTGTCTCAATTCTAGTCACTTGATGATGTCAAGAT  837

seq1  TCTTGGTCCAAGTGATGATCCTGCTAAATTGCCTTCTGAGCTGGTGGAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCCAAGTGATGATCCTGCTAAATTGCCTTCTGAGCTGGTGGAGT  887

seq1  CTATTGGATAGCTCTTGTAACTGAACGGTGTGTTCTAGCTACACCATAGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGATAGCTCTTGTAACTGAACGGTGTGTTCTAGCTACACCATAGC  937

seq1  AGAGAGCGGGTGCTTAGTTAGACGAAGCTGCCTCCTTTCTTCTGGTCTCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCGGGTGCTTAGTTAGACGAAGCTGCCTCCTTTCTTCTGGTCTCA  987

seq1  TTCTCAGCAGGTTCTGGGCACCACTGTGTCAGCTTAGCCATGCAAATGGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCAGGTTCTGGGCACCACTGTGTCAGCTTAGCCATGCAAATGGG  1037

seq1  AACGAAGCTCCTTTTCTCTTTAAAGCTTGTGTTACTCTCACCCATGCTGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAGCTCCTTTTCTCTTTAAAGCTTGTGTTACTCTCACCCATGCTGT  1087

seq1  GTCATCCTACTCCAGTCCCTGTTACAGATTGCCTTTGCTTGCCAGAGTTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTACTCCAGTCCCTGTTACAGATTGCCTTTGCTTGCCAGAGTTC  1137

seq1  CAGAAGGTCCCTTTCAACTTGGGGCACAGGCCATCTGAAATGAACTAAAG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTCCCTTTCAACTTGGGGCACAGGCCATCTGAAATGAACTAAAG  1187

seq1  CCCAGAATTC  1200
      ||||||||||
seq2  CCCAGAATTC  1197