BAC Information

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BAC

Clone NameB6Ng01-081A02
Chromosome16 (Build37)
Map Location 58,422,858 - 58,548,915
singlet/doubletdoublet
Overlap geneDcbld2, St3gal6
Upstream gene2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342, LOC100043477
Downstream geneLOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081A02.bB6Ng01-081A02.g
ACCDH895981DH895982
length7561,055
definitionDH895981|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A02, 5' end.DH895982|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,548,160 - 58,548,915)(58,422,858 - 58,423,922)
sequence
gaattctagaatcatgggaaatcagcatccttaagtacatcttcttcata
tcagcactttgtctaactctttctctcttgaacacgaacatgccactgtt
ctcactttaccttttgatatagcctatagaaataagcgtccttccccaaa
tcactttaaaaactgcatttttctaaacaatgcgaaaatattataactgc
ttattctatctgatgaagtgaagataggcatattattgatgattttccat
atctgaaaccaaagcaagaaacctcaaaatgtgcatattgggaggctgaa
gtaaaagaatcaagaggttggggccagcctgggctatgtactataataat
aagctcattatatgttaaaataacacattttaaaatagctatcttttcta
aaacaaataaaagtgagaaaagtagcatttatttatggttgtaaatctct
ttgatatccaagttgacagatgaggtctcatatttgcttgttgagtcaat
tcattggttaaccatactgttctggttaaggcataagaggaagttctagc
ctcacacagattagtaatcaaaaagaaagtcgtttatcatttcctcttga
gataatggcatatttgtccatgatgctgcatcaaaactatgtaagagtat
ttgcagcgtagggctagaacatgctatcaaagacctgctgtaactcacat
ttcatatcatgtttttacagagtctctctctctctctctctctctctctc
tctctc
gaattccattacacttccaaggttctgcatatcaaaaatagcataatctg
aaatgtttaattatctatcaaagaattgtttcttaaatattggaacactt
ctaggaatcacaagctagtttcaaatgttagatactattttagggtagtt
gtttttgcctctggaagggaaaatgttaatgattgttgaaaagggacttg
tatttcagttgcttattttcacactggaggtttttatagccttatgattt
tactctaggttagatccaagagggacagagagaggcagcgagagggaatt
ttatggtagctttggaaggaaatggtatttttttattatgtaagagcctg
ttttactgtaaaatcagtgggtgtatttcacacccacatttacttcattc
tctccatattttttatattattaacccactatgcctagttctcgtgcatg
aatgaaatcaggggtcggaaataaagtatagtgttgactgaaagctaaac
tttatatgagaagtgtttgttcagaaagcagaatttatagtatccaactc
aaaagtagagcagcatgtagtactaacgtgggtcagagagtaaaacccca
gccgaagccactgctgcttcaggaccgtcaagggctgcgtggggactgtt
gctgcattgtggacatgaaaactgccttttggtaaattgaagttactcta
ttgctgtcagtgactgcatacttccttgccccacctcttaccagccctat
actactaaagctgttgtaacgtttaatttgttctagtgaatgaaatgcat
agtacattgttaggtaattacatgaggggaattctgttaccaccatccat
gcctgtaatgattaagttaaacccacaagtgtcattttaatgttttctat
aagttctatactatccaaaagatgataatgagtagttcttttaaggcgaa
ccccattattaaaacgggatgtatttatcatcctattaaaagaagactct
ctgatcctcgtgttactgatgttgactacctgggaagtacagctgaatcc
tctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_58548160_58548915
seq2: B6Ng01-081A02.b_45_800 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCTGTAAAAACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCTGTAAAAACATGA  50

seq1  TATGAAATGTGAGTTACAGCAGGTCTTTGATAGCATGTTCTAGCCCTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATGTGAGTTACAGCAGGTCTTTGATAGCATGTTCTAGCCCTACG  100

seq1  CTGCAAATACTCTTACATAGTTTTGATGCAGCATCATGGACAAATATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATACTCTTACATAGTTTTGATGCAGCATCATGGACAAATATGCC  150

seq1  ATTATCTCAAGAGGAAATGATAAACGACTTTCTTTTTGATTACTAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCAAGAGGAAATGATAAACGACTTTCTTTTTGATTACTAATCTG  200

seq1  TGTGAGGCTAGAACTTCCTCTTATGCCTTAACCAGAACAGTATGGTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCTAGAACTTCCTCTTATGCCTTAACCAGAACAGTATGGTTAAC  250

seq1  CAATGAATTGACTCAACAAGCAAATATGAGACCTCATCTGTCAACTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATTGACTCAACAAGCAAATATGAGACCTCATCTGTCAACTTGGA  300

seq1  TATCAAAGAGATTTACAACCATAAATAAATGCTACTTTTCTCACTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGAGATTTACAACCATAAATAAATGCTACTTTTCTCACTTTTAT  350

seq1  TTGTTTTAGAAAAGATAGCTATTTTAAAATGTGTTATTTTAACATATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAGAAAAGATAGCTATTTTAAAATGTGTTATTTTAACATATAAT  400

seq1  GAGCTTATTATTATAGTACATAGCCCAGGCTGGCCCCAACCTCTTGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATTATTATAGTACATAGCCCAGGCTGGCCCCAACCTCTTGATTC  450

seq1  TTTTACTTCAGCCTCCCAATATGCACATTTTGAGGTTTCTTGCTTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCAGCCTCCCAATATGCACATTTTGAGGTTTCTTGCTTTGGTT  500

seq1  TCAGATATGGAAAATCATCAATAATATGCCTATCTTCACTTCATCAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATGGAAAATCATCAATAATATGCCTATCTTCACTTCATCAGATA  550

seq1  GAATAAGCAGTTATAATATTTTCGCATTGTTTAGAAAAATGCAGTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCAGTTATAATATTTTCGCATTGTTTAGAAAAATGCAGTTTTTA  600

seq1  AAGTGATTTGGGGAAGGACGCTTATTTCTATAGGCTATATCAAAAGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTGGGGAAGGACGCTTATTTCTATAGGCTATATCAAAAGGTAA  650

seq1  AGTGAGAACAGTGGCATGTTCGTGTTCAAGAGAGAAAGAGTTAGACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAACAGTGGCATGTTCGTGTTCAAGAGAGAAAGAGTTAGACAAAG  700

seq1  TGCTGATATGAAGAAGATGTACTTAAGGATGCTGATTTCCCATGATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATATGAAGAAGATGTACTTAAGGATGCTGATTTCCCATGATTCTA  750

seq1  GAATTC  756
      ||||||
seq2  GAATTC  756

seq1: chr16_58422858_58423922
seq2: B6Ng01-081A02.g_68_1122

seq1  GAATTCCATTACACTTCCAAGGTTCTGCATATCAAAAATAGCATAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACACTTCCAAGGTTCTGCATATCAAAAATAGCATAATCTG  50

seq1  AAATGTTTAATTATCTATCAAAGAATTGTTTCTTAAATATTGGAACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTAATTATCTATCAAAGAATTGTTTCTTAAATATTGGAACACTT  100

seq1  CTAGGAATCACAAGCTAGTTTCAAATGTTAGATACTATTTTAGGGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATCACAAGCTAGTTTCAAATGTTAGATACTATTTTAGGGTAGTT  150

seq1  GTTTTTGCCTCTGGAAGGGAAAATGTTAATGATTGTTGAAAAGGGACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCCTCTGGAAGGGAAAATGTTAATGATTGTTGAAAAGGGACTTG  200

seq1  TATTTCAGTTGCTTATTTTCACACTGGAGGTTTTTATAGCCTTATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTTGCTTATTTTCACACTGGAGGTTTTTATAGCCTTATGATTT  250

seq1  TACTCTAGGTTAGATCCAAGAGGGACAGAGAGAGGCAGCGAGAGGGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGGTTAGATCCAAGAGGGACAGAGAGAGGCAGCGAGAGGGAATT  300

seq1  TTATGGTAGCTTTGGAAGGAAATGGTATTTTTTTATTATGTAAGAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAGCTTTGGAAGGAAATGGTATTTTTTTATTATGTAAGAGCCTG  350

seq1  TTTTACTGTAAAATCAGTGGGTGTATTTCACACCCACATTTACTTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGTAAAATCAGTGGGTGTATTTCACACCCACATTTACTTCATTC  400

seq1  TCTCCATATTTTTTATATTATTAACCCACTATGCCTAGTTCTCGTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATTTTTTATATTATTAACCCACTATGCCTAGTTCTCGTGCATG  450

seq1  AATGAAATCAGGGGTCGGAAATAAAGTATAGTGTTGACTGAAAGCTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATCAGGGGTCGGAAATAAAGTATAGTGTTGACTGAAAGCTAAAC  500

seq1  TTTATATGAGAAGTGTTTGTTCAGAAAGCAGAATTTATAGTATCCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGAGAAGTGTTTGTTCAGAAAGCAGAATTTATAGTATCCAACTC  550

seq1  AAAAGTAGAGCAGCATGTAGTACTAACGTGGGTCAGAGAGTAAAACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGAGCAGCATGTAGTACTAACGTGGGTCAGAGAGTAAAACCCCA  600

seq1  GCCGAAGCCACTGCTGCTTCAGGACCGTCAAGGGCTGCGTGGGGACTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGCCACTGCTGCTTCAGGACCGTCAAGGGCTGCGTGGGGACTGTT  650

seq1  GCTGCATTGTGGACATG-AAACTGCCTTTTGGTAAATTGAAGTTACTCTA  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGCATTGTGGACATGAAAACTGCCTTTTGGTAAATTGAAGTTACTCTA  700

seq1  TTGCTGTCAGTGACTGCATACTTCCTTGCCCCACCTCTTACCAGCCCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCAGTGACTGCATACTTCCTTGCCCCACCTCTTACCAGCCCTAT  750

seq1  ACTACT-AAGCTGTTGTAACGTTTAATTTGTTCTAGTGAATGAAATGCAT  798
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAAAGCTGTTGTAACGTTTAATTTGTTCTAGTGAATGAAATGCAT  800

seq1  AGTACATTGTTAGGTAATAACATGAGGGGAATTCTGTTACCACCATCCAT  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTACATTGTTAGGTAATTACATGAGGGGAATTCTGTTACCACCATCCAT  850

seq1  GCCTGTAATGATTAAGTTAAACCCACAAGTGTCAATTTTAATGTTTTCTA  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCTGTAATGATTAAGTTAAACCCACAAGTGTC-ATTTTAATGTTTTCTA  899

seq1  TAAGTTCTATACTATTCCAAAAGATGATAATGAGTAGTTCTTTTAAAGGC  948
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  TAAGTTCTATACTA-TCCAAAAGATGATAATGAGTAGTTCTTTT-AAGGC  947

seq1  GGAAACCCCATTATTTAAAACGGGATGTATTTATCATCCTATTAAAAAGA  998
      |  |||||||||| |||||||||||||||||||||||||||||||||  |
seq2  G--AACCCCATTA-TTAAAACGGGATGTATTTATCATCCTATTAAAAGAA  994

seq1  GACTCACTGAATCTCGTTGTTACTGAATGTTGAACATTACCTTGGGAGCA  1048
      ||||| ||||  |||| |||||||| ||||||   | |||| |||||   
seq2  GACTCTCTGATCCTCG-TGTTACTG-ATGTTG---ACTACC-TGGGAAGT  1038

seq1  ACAGCTGAATCTTCTAA  1065
      ||||||||||| |||||
seq2  ACAGCTGAATCCTCTAA  1055