BAC Information

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BAC

Clone NameB6Ng01-081N01
Chromosome16 (Build37)
Map Location 67,118,765 - 67,251,628
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneLOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081N01.bB6Ng01-081N01.g
ACCDH896551DH896552
length1,0971,160
definitionDH896551|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N01, 5' end.DH896552|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,118,765 - 67,119,864)(67,250,447 - 67,251,628)
sequence
gaattctttaaaaaaaaatcacagcataaaagcacataaccttgtttaag
gcaaggactgtaagagcgagggattgtaagtaatgttttatataatgcaa
aagagctttggaacgttctagaaactccaagtgcttcaggtgttttaaaa
atatttaatggaaacagaataggaagttattttcattttagtatcatgat
aaactataccatctgacttggtagaattaggaggttctgaacctttgagg
catgtttggatatgtacctaataattcctcaggcatattcatctattgca
tttttatggaagatgaaacctagtaaatttatgacattgtgtctattgaa
gaattggaagaatctcatagattctttataaatctaatctggggtccctg
agatgacacagcaaatagggaagcttgttatcaagtctgatcatctgata
ttgaggctccacctcacatgattgcaagagaactgagtattgcatttgtc
ttctgactattatatgtatgttatatcacaggtaggctgacttacacaca
cacacacacacacacacacacacacacacacacagacacacacacaaaga
gtggaacacataaactaaaagtattaaaaatgcaatcctaataattttga
cttacactgttatgatcacataaattccttaaatatcaactacaccaaag
aatgtgtgttgtaaattcctcaggggaacactaaattccgacttctcagt
cagacagatttcttgaagtaggcaaagtaactcaaaatttgctgtcctat
ttaggaagattctcaacttctcgtcctaaaaagcatacatgtcaaatgct
tatatcacttctacacaatgttatatgtagttctacaatataatgtattc
agctcacgacattacagtccttaaaggtcagtgtaactgattaagcactt
gttcctgcatctcagccgtcgcccctctcttcccacatcagactcaaatg
acagtagcttagaacatccaatgagatgaaatctttcccagtaacagtga
tgtgcggtgatttccacactgcactttattatgaaatcactagagat
gaattctcgggatcaaaacactgtgacctgcaagattgttttcttttttc
atcaacaaaaaatgcattttattcaagttgttatgtttcgggggctccat
taaattcattttgtgttccactggcaacagttacactgcaaagacaaaaa
cattggcttttcttctgtaactggagttgaggccattttcagctttcatc
ctttactgccaccatcctattctctgacatcttttgaaaaatgcacgttc
tatgcaagaaggctttggcaaacatttctatttttcaatctgtttgcaga
agtcagcagcggctgaatgaatgcttctagaaaacatgttcaatgacaaa
caaggtgttcattccctttccagaggatagaattaaaacttcttcccatt
ttatataaagtgcctgttattactaagcaaattagtatagagtaataaat
atggctatactatcagaagtatttcactttaactggaataaagatttatt
atgtaagaataagaggaagaaacacactaggcaatatagtaagaatgatt
tacaataaatacagatttgcttggcctcactaaaatgtgaatggtaattg
tagctttttcatacatattatttcatatacttctctattttgctttatac
aaaatacatcttataaaaccttattttttgttaatttcatccaaatatac
atgttactgaaataacataatctatgtagctttgaattagaatacttacc
acagaaataagtataacattatctggcactttattataattttggatttt
atcctgtactacattcaaatataaagtttacttttgagttttcaacaaag
tattctaagtagtaggtttacttatgatgttttcatgatcactagatgtg
gttgatttgtggccctgtcccactctaaccctgtgcatccctggtctgta
tcgcaagatcatcttcatctcatattcccactcattgtaatcacctgttt
ttcattactctcttgctctgtcatctgaaatatacaaatgctgtaattaa
tttgcatttatcattaaaatttataacaccattactgaagtgaggaaaat
ccagaattggcccagtttatatgtgttcaagtgcatgtttctagatctat
ggaagaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_67118765_67119864
seq2: B6Ng01-081N01.b_48_1144

seq1  GAATTCTTTAAAAAAAAATCACAGCATAAAAGCACATAACCTTGTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAAAAAATCACAGCATAAAAGCACATAACCTTGTTTAAG  50

seq1  GCAAGGACTGTAAGAGCGAGGGATTGTAAGTAATGTTTTATATAATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACTGTAAGAGCGAGGGATTGTAAGTAATGTTTTATATAATGCAA  100

seq1  AAGAGCTTTGGAACGTTCTAGAAACTCCAAGTGCTTCAGGTGTTTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTTGGAACGTTCTAGAAACTCCAAGTGCTTCAGGTGTTTTAAAA  150

seq1  ATATTTAATGGAAACAGAATAGGAAGTTATTTTCATTTTAGTATCATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATGGAAACAGAATAGGAAGTTATTTTCATTTTAGTATCATGAT  200

seq1  AAACTATACCATCTGACTTGGTAGAATTAGGAGGTTCTGAACCTTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATACCATCTGACTTGGTAGAATTAGGAGGTTCTGAACCTTTGAGG  250

seq1  CATGTTTGGATATGTACCTAATAATTCCTCAGGCATATTCATCTATTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGGATATGTACCTAATAATTCCTCAGGCATATTCATCTATTGCA  300

seq1  TTTTTATGGAAGATGAAACCTAGTAAATTTATGACATTGTGTCTATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGGAAGATGAAACCTAGTAAATTTATGACATTGTGTCTATTGAA  350

seq1  GAATTGGAAGAATCTCATAGATTCTTTATAAATCTAATCTGGGGTCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAAGAATCTCATAGATTCTTTATAAATCTAATCTGGGGTCCCTG  400

seq1  AGATGACACAGCAAATAGGGAAGCTTGTTATCAAGTCTGATCATCTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACACAGCAAATAGGGAAGCTTGTTATCAAGTCTGATCATCTGATA  450

seq1  TTGAGGCTCCACCTCACATGATTGCAAGAGAACTGAGTATTGCATTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTCCACCTCACATGATTGCAAGAGAACTGAGTATTGCATTTGTC  500

seq1  TTCTGACTATTATATGTATGTTATATCACAGGTAGGCTGACTTACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTATTATATGTATGTTATATCACAGGTAGGCTGACTTACACACA  550

seq1  CACACACACACACACACACACACACACACACACAGACACACACACAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGACACACACACAAAGA  600

seq1  GTGGAACACATAAACTAAAAGTATTAAAAATGCAATCCTAATAATTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACACATAAACTAAAAGTATTAAAAATGCAATCCTAATAATTTTGA  650

seq1  CTTACACTGTTATGATCACATAAATTCCTTAAATATCAACTACACCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTGTTATGATCACATAAATTCCTTAAATATCAACTACACCAAAG  700

seq1  AATGTGTGTTGTAAATTCCTCAGGGGAACACTAAATTCCGACTTCTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTTGTAAATTCCTCAGGGGAACACTAAATTCCGACTTCTCAGT  750

seq1  CAGACAGATTTCTTGAAGTAGGCAAAGTAACTCAAAATTTGCTGTCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATTTCTTGAAGTAGGCAAAGTAACTCAAAATTTGCTGTCCTAT  800

seq1  TTAGGAAGATTCTCAACTTCTCGTCCTAAAAAGCATACATGTCAAATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGATTCTCAACTTCTCGTCCTAAAAAGCATACATGTCAAATGCT  850

seq1  TATATCACTTCTACACAATGTTATATGTAGTTCTACAATATAATGTATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACTTCTACACAATGTTATATGTAGTTCTACAATATAATGTATTC  900

seq1  AGCTCACGACATTACAGTCCTTAAAGGTCAGTGTAACTGATTAAGCACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACGACATTACAGTCCTTAAAGGTCAGTGTAACTGATTAAGCACTT  950

seq1  GTTCCTGCATCTCAGCCGTCGCCCCTCTCTTCCCACATCAGACTCAAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCATCTCAGCCGTCGCCCCTCTCTTCCCACATCAGACTCAAATG  1000

seq1  ACAGTAGCCTTAGAACATCCAATGAGATGAAATCTTTCCCAGTAACAGTG  1050
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAG-CTTAGAACATCCAATGAGATGAAATCTTTCCCAGTAACAGTG  1049

seq1  AATGTGCGGTGATTTCCACACTGCACTTTTATTATGAAATCACTAGAGAT  1100
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -ATGTGCGGTGATTTCCACACTGCAC-TTTATTATGAAATCACTAGAGAT  1097

seq1: chr16_67250447_67251628
seq2: B6Ng01-081N01.g_67_1226 (reverse)

seq1  TATTTCTTTCCATAGAATCATAG-AACATGCACTTTGAACATTAATAAA-  48
      |||||| |||||||| ||| ||| ||||||||| |||||||   ||||| 
seq2  TATTTC-TTCCATAG-ATC-TAGAAACATGCAC-TTGAACACATATAAAC  46

seq1  TGGGCCATATCTGTGATTTTTCTCACCTATCAGTTAATGTGTGTATATAA  98
      |||||||  |||| |||||| |||||   |||| ||||| |||| |||||
seq2  TGGGCCAATTCTG-GATTTTCCTCAC--TTCAG-TAATG-GTGT-TATAA  90

seq1  ATATTTATATGATAAATGCATATTTAAATACAGCATATGTATATTTTCAG  148
      || |||| |||||||||||| | |||| |||||||| |||||| ||||||
seq2  AT-TTTA-ATGATAAATGCA-AATTAATTACAGCATTTGTATA-TTTCAG  136

seq1  ATGACAGAAGCAAAGGAGAGTAATGAAAAACAGGTGATTTACAATGGAGT  198
      ||||||| |||||  |||||||||||||||||||||| ||||||| ||||
seq2  ATGACAG-AGCAA--GAGAGTAATGAAAAACAGGTGA-TTACAAT-GAGT  181

seq1  GGGAATATTGAGATGGAAGATGATCTTGGCGATACAGACCAGGGATGCAC  248
      ||||||| |||||| |||||||||||| ||||||||||||||||||||||
seq2  GGGAATA-TGAGAT-GAAGATGATCTT-GCGATACAGACCAGGGATGCAC  228

seq1  AGGGTTAGAGTGGGACAGGGGCCACAAATCAACCACATCTTAGTGATCAT  298
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  AGGGTTAGAGTGGGACA-GGGCCACAAATCAACCACATC-TAGTGATCAT  276

seq1  GAAAACATCATAAGTAAACCTACTACTTAGAATACTTTGTTGAAAACTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATCATAAGTAAACCTACTACTTAGAATACTTTGTTGAAAACTCA  326

seq1  AAAGTAAACTTTATATTTGAATGTAGTACAGGATAAAATCCAAAATTATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACTTTATATTTGAATGTAGTACAGGATAAAATCCAAAATTATA  376

seq1  ATAAAGTGCCAGATAATGTTATACTTATTTCTGTGGTAAGTATTCTAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGCCAGATAATGTTATACTTATTTCTGTGGTAAGTATTCTAATT  426

seq1  CAAAGCTACATAGATTATGTTATTTCAGTAACATGTATATTTGGATGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTACATAGATTATGTTATTTCAGTAACATGTATATTTGGATGAAA  476

seq1  TTAACAAAAAATAAGGTTTTATAAGATGTATTTTGTATAAAGCAAAATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAAATAAGGTTTTATAAGATGTATTTTGTATAAAGCAAAATAG  526

seq1  AGAAGTATATGAAATAATATGTATGAAAAAGCTACAATTACCATTCACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATATGAAATAATATGTATGAAAAAGCTACAATTACCATTCACAT  576

seq1  TTTAGTGAGGCCAAGCAAATCTGTATTTATTGTAAATCATTCTTACTATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAGGCCAAGCAAATCTGTATTTATTGTAAATCATTCTTACTATA  626

seq1  TTGCCTAGTGTGTTTCTTCCTCTTATTCTTACATAATAAATCTTTATTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAGTGTGTTTCTTCCTCTTATTCTTACATAATAAATCTTTATTCC  676

seq1  AGTTAAAGTGAAATACTTCTGATAGTATAGCCATATTTATTACTCTATAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGTGAAATACTTCTGATAGTATAGCCATATTTATTACTCTATAC  726

seq1  TAATTTGCTTAGTAATAACAGGCACTTTATATAAAATGGGAAGAAGTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTTAGTAATAACAGGCACTTTATATAAAATGGGAAGAAGTTTT  776

seq1  AATTCTATCCTCTGGAAAGGGAATGAACACCTTGTTTGTCATTGAACATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATCCTCTGGAAAGGGAATGAACACCTTGTTTGTCATTGAACATG  826

seq1  TTTTCTAGAAGCATTCATTCAGCCGCTGCTGACTTCTGCAAACAGATTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAAGCATTCATTCAGCCGCTGCTGACTTCTGCAAACAGATTGA  876

seq1  AAAATAGAAATGTTTGCCAAAGCCTTCTTGCATAGAACGTGCATTTTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAATGTTTGCCAAAGCCTTCTTGCATAGAACGTGCATTTTTCA  926

seq1  AAAGATGTCAGAGAATAGGATGGTGGCAGTAAAGGATGAAAGCTGAAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCAGAGAATAGGATGGTGGCAGTAAAGGATGAAAGCTGAAAAT  976

seq1  GGCCTCAACTCCAGTTACAGAAGAAAAGCCAATGTTTTTGTCTTTGCAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAACTCCAGTTACAGAAGAAAAGCCAATGTTTTTGTCTTTGCAGT  1026

seq1  GTAACTGTTGCCAGTGGAACACAAAATGAATTTAATGGAGCCCCCGAAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTTGCCAGTGGAACACAAAATGAATTTAATGGAGCCCCCGAAAC  1076

seq1  ATAACAACTTGAATAAAATGCATTTTTTGTTGATGAAAAAAGAAAACAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACTTGAATAAAATGCATTTTTTGTTGATGAAAAAAGAAAACAAT  1126

seq1  CTTGCAGGTCACAGTGTTTTGATCCCGAGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGTCACAGTGTTTTGATCCCGAGAATTC  1160