BAC Information

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BAC

Clone NameB6Ng01-081O04
Chromosome16 (Build37)
Map Location 63,629,610 - 63,630,752
singlet/doubletsinglet
Overlap geneEpha3
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081O04.bB6Ng01-081O04.g
ACCDH896604DH896605
length1,1121,132
definitionDH896604|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O04, 5' end.DH896605|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagttttatcatac
agatctttcacttccttcgttagagtcacggccgagatattttatataat
tgtggctattgagaaggtgtggtttccttatttcttttctcagcctgttt
attcttgtgtagaagaaaggccattgaacttgtttgagtaattttatatt
tcagctacttcaccaagctggtttatcaggtttaaggaattctctgtgtg
gaattttatagg
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgatgaacagagttctttaaagaaaaataatgaatatatgtaagtgagg
ggaagagataatgagctttttattttagtttctcacacagaaaaatattt
tttgtacgacttatacatataaatgcatataatattagtatgcatgatag
tataaattacatattataatatcatgcacaaacaaattccacagtttcta
agacaacatttttagttgaactttttgaaataaaagataaatacacacaa
ttttagactcatgcctacatgtcagcttagataacctggttatctatgaa
atatggaactattttctgttgctgggacttggcaatagagattgccaaaa
tctctctctcactttcaaattgaacttttcttggttgtgtctagtcatat
atatcctgacaatgcaagccattaaaactatatttacttcttaataaaca
ctattgctcacttataacaatttatgtctgtttgtaaaacagtgtcctta
gtaaagataactacttcatgaaggcacaaaaaattattctcctcattgct
ccttaccaaaaataagcttgcatagtctccatgaatttctcacatctgtt
ttacctggtgaaacaaactctggaagtagtaatcgtaaatggaccgatct
gttattccagagaagttggtctactacagctaagtgaggccagaggagtt
agaaacagaagatgtggggcagaccaattgggcttagtgcagtgtctcct
ttggtgaaaggggtagacaggtgaatgccaggataacatcccctctacct
gtgaacgagccttttccaaggggaacttgcccctcgtccttttgtcggat
cctctaggacagtatttcctcctcgtgtgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63629610_63630752
seq2: B6Ng01-081O04.g_70_1201 (reverse)

seq1  GATCACACGGTGAGTGAAAATTACTGTCTAGGAGGAATCAGACAAAAAGA  50
      |||||||||  ||| ||||  |||||||   |||| ||| ||||||| ||
seq2  GATCACACGAGGAG-GAAA--TACTGTCCTAGAGG-ATCCGACAAAAGGA  46

seq1  CAGAGGGGCAGGTTCCCC-TGGGAAAGGCTCGTTCACAGGTAGA-GTGAT  98
      | |||||||| ||||||| ||| ||||||||||||||||||||| | |||
seq2  C-GAGGGGCAAGTTCCCCTTGGAAAAGGCTCGTTCACAGGTAGAGGGGAT  95

seq1  GATATCCTGGCATTCACCTGTCTAACACCTTTCACCAAAGGAGACACCTG  148
      | ||||||||||||||||||||| || ||||||||||||||||||| |||
seq2  GTTATCCTGGCATTCACCTGTCT-ACCCCTTTCACCAAAGGAGACA-CTG  143

seq1  CCACTTAGGCCAATTGGTCTGCCCCACAATCTTCTGTTTCTAACTTCCTC  198
       |||| || |||||||||||||||||| |||||||||||||||| |||||
seq2  -CACTAAGCCCAATTGGTCTGCCCCAC-ATCTTCTGTTTCTAAC-TCCTC  190

seq1  TGGCCTCACTTAGCTGTAGTAAGACCAACTTCTCTGGAATAACAGATCGG  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGCCTCACTTAGCTGTAGT-AGACCAACTTCTCTGGAATAACAGATCGG  239

seq1  TCCATTTTACGATTACTACTTCCAGAGTTTTGTTTCACCAGGTAAAACAG  298
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCA-TTTACGATTACTACTTCCAGAG-TTTGTTTCACCAGGTAAAACAG  287

seq1  ATGTGAGAAATTCATGGAGACTATGCAAGCTTATTTTTGGTAAGGAGCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAAATTCATGGAGACTATGCAAGCTTATTTTTGGTAAGGAGCAA  337

seq1  TGAGGAGAATAATTTTTTGTGCCTTCATGAAGTAGTTATCTTTACTAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAATAATTTTTTGTGCCTTCATGAAGTAGTTATCTTTACTAAGG  387

seq1  ACACTGTTTTACAAACAGACATAAATTGTTATAAGTGAGCAATAGTGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTTTACAAACAGACATAAATTGTTATAAGTGAGCAATAGTGTTT  437

seq1  ATTAAGAAGTAAATATAGTTTTAATGGCTTGCATTGTCAGGATATATATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAGTAAATATAGTTTTAATGGCTTGCATTGTCAGGATATATATG  487

seq1  ACTAGACACAACCAAGAAAAGTTCAATTTGAAAGTGAGAGAGAGATTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACACAACCAAGAAAAGTTCAATTTGAAAGTGAGAGAGAGATTTTG  537

seq1  GCAATCTCTATTGCCAAGTCCCAGCAACAGAAAATAGTTCCATATTTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCTATTGCCAAGTCCCAGCAACAGAAAATAGTTCCATATTTCAT  587

seq1  AGATAACCAGGTTATCTAAGCTGACATGTAGGCATGAGTCTAAAATTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCAGGTTATCTAAGCTGACATGTAGGCATGAGTCTAAAATTGTG  637

seq1  TGTATTTATCTTTTATTTCAAAAAGTTCAACTAAAAATGTTGTCTTAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATCTTTTATTTCAAAAAGTTCAACTAAAAATGTTGTCTTAGAA  687

seq1  ACTGTGGAATTTGTTTGTGCATGATATTATAATATGTAATTTATACTATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAATTTGTTTGTGCATGATATTATAATATGTAATTTATACTATC  737

seq1  ATGCATACTAATATTATATGCATTTATATGTATAAGTCGTACAAAAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACTAATATTATATGCATTTATATGTATAAGTCGTACAAAAAATA  787

seq1  TTTTTCTGTGTGAGAAACTAAAATAAAAAGCTCATTATCTCTTCCCCTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTGTGAGAAACTAAAATAAAAAGCTCATTATCTCTTCCCCTCA  837

seq1  CTTACATATATTCATTATTTTTCTTTAAAGAACTCTGTTCATCAGAACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATATATTCATTATTTTTCTTTAAAGAACTCTGTTCATCAGAACAG  887

seq1  CAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAA  937

seq1  CTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACC  987

seq1  ACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  1037

seq1  TAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCA  1087

seq1  AATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1132