BAC Information

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BAC

Clone NameB6Ng01-083M05
Chromosome2 (Build37)16 (Build37)
Map Location 66,497,562 - 66,498,77079,993,583 - 79,993,660
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneScn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a
Downstream geneScn7a, LOC383707, LOC100039540, Gm1322, Cmya3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083M05.bB6Ng01-083M05.g
ACCDH897933DH897934
length1,167825
definitionDH897933|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M05, 5' end.DH897934|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,497,562 - 66,498,770)(79,993,583 - 79,993,660)
sequence
gaattctctctcacctgctctgtaacccaatagtactgggaatgaattca
gttgccattggtttgtgtgaaaactgctcatctttattttgacaatgtca
tcagattgtcccgtattggtcaagagatcataaaggtattgcttatttct
aaacttattttcttattctgttaaatgtgtgtatgtttcttataatccca
atcattgctctattttgtagggtctaatctttgaaggccatggagtttat
ttttttctattttgaataatagttttttcatctctaggactttccagtgt
ttaaaaaatattttctgcaaggcagtggtggctcacacctttaatcccag
cacttgggaggcagagacaggcagatttctgagtttgaggccagcctggt
ctacaaagtgagttccaggacagccagggctatacagagaaactctgtct
cgaaaaaccaaatatctatctatctatctatctatctatctatctatcta
tctatctatctatctatctatcctattctactttacttcttatatcccag
ggtcctctagttcatgcctataattatataatgtattatgtctaatttta
tgttataattggcttattctgttatttatactttgactgaaatttttata
gagaagggacaaacatttccatttcttttctacatttaatgccagtttta
atggaatgccaggcatagacagaggagatagctctgttggtacgttgctt
gccttgccacctgagtttcgtctctatctcccaagccaaactgagcctgc
atagctcatgctttgtcatcttagcttcagggaggatgagaaagggaatc
cccagtgctcactgggtagccagccagtatatcaaaactggtgaccttca
gcttcagaaagaaaaagtagaggaaagtctcatgagatggttcaatgaat
aaaaggtacttgctgccagacttgacatcctgagttcaatgctctggttg
gacatagtgaagaaagaactgactcctgcatgatctttggacacccacac
atgtgccggattgttcatgtcccctgcatgtacacctgtggacgtgtata
gtagattaaatgtaaacgatgaagcggtaaaaaaactggatgacgcctcc
atcatgctcaatgttca
gaattcatatctttaggacataaatccattaactaaagtccagcatggaa
atgaacagtttattgtaggtgcaaagatagaagataaaatattgactggg
tttatctatacaaaacttcagtgttaacttagacctaagaattatagttt
aaaccctcaatgaacctgtggcactattgacagaaaataaatgtctagtt
agaataccagtcttaatggaaacacatgtaatcatctctattgtaacttc
ttgttcaatttatgatttgaattgatgtttgaacttattggaacttttgg
aatacaataggatctattctcctgaaaaagcacaaagtattaggaaagat
gactgtaaagaggcagaaagagaataggctagaagcattacagagatgaa
gaactgagcagatgaagacagactaagaagaggagctccagagaaaggaa
aaagcagcaggcaggcttttgttccaatgggacagatttataaaattcat
ttagcaatgaatcagaagcattttctttctctagacctaaagtcgaagct
tatttctcacccagaatgagtgggttctttctgtgctgccactatggagc
ttgctcgtgagggcatttgcttcatcaaccaaaagtacatacatgtacat
gtaagtataaatgtgtgtctaagtatgtatgttggtaagacaagtggttg
gacccaacatgaatgtataaaggtatatgacgggaatgtatgaaggtgta
tgagtgtgtatgaacatatgtgtgcatgtgtgcgtgtgtgtgtgcgtgtg
cgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_66497562_66498770
seq2: B6Ng01-083M05.b_45_1211

seq1  GAATTCTCTCTCACCTGCTCTGTAACCCAATAGTACTGGGAATGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCACCTGCTCTGTAACCCAATAGTACTGGGAATGAATTCA  50

seq1  GTTGCCATTGGTTTGTGTGAAAACTGCTCATCTTTATTTTGACAATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATTGGTTTGTGTGAAAACTGCTCATCTTTATTTTGACAATGTCA  100

seq1  TCAGATTGTCCCGTATTGGTCAAGAGATCATAAAGGTATTGCTTATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGTCCCGTATTGGTCAAGAGATCATAAAGGTATTGCTTATTTCT  150

seq1  AAACTTATTTTCTTATTCTGTTAAATGTGTGTATGTTTCTTATAATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTTTCTTATTCTGTTAAATGTGTGTATGTTTCTTATAATCCCA  200

seq1  ATCATTGCTCTATTTTGTAGGGTCTAATCTTTGAAGGCCATGGAGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGCTCTATTTTGTAGGGTCTAATCTTTGAAGGCCATGGAGTTTAT  250

seq1  TTTTTTCTATTTTGAATAATAGTTTTTTCATCTCTAGGACTTTCCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTATTTTGAATAATAGTTTTTTCATCTCTAGGACTTTCCAGTGT  300

seq1  TTAAAAAATATTTTCTGCAAGGCAGTGGTGGCTCACACCTTTAATCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATATTTTCTGCAAGGCAGTGGTGGCTCACACCTTTAATCCCAG  350

seq1  CACTTGGGAGGCAGAGACAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCAGAGACAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGT  400

seq1  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACTCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACTCTGTCT  450

seq1  CGAAAAACCAAATATCTATCTATCTATCTATCTATCTATCTATCTATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAACCAAATATCTATCTATCTATCTATCTATCTATCTATCTATCTA  500

seq1  TCTATCTATCTATCTATCTATCCTATTCTACTTTACTTCTTATATCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCCTATTCTACTTTACTTCTTATATCCCAG  550

seq1  GGTCCTCTAGTTCATGCCTATAATTATATAATGTATTATGTCTAATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTAGTTCATGCCTATAATTATATAATGTATTATGTCTAATTTTA  600

seq1  TGTTATAATTGGCTTATTCTGTTATTTATACTTTGACTGAAATTTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAATTGGCTTATTCTGTTATTTATACTTTGACTGAAATTTTTATA  650

seq1  GAGAAGGGACAAACATTTCCATTTCTTTTCTACATTTAATGCCAGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGACAAACATTTCCATTTCTTTTCTACATTTAATGCCAGTTTTA  700

seq1  ATGGAATGCCAGGCATAGACAGAGGAGATAGCTCTGTTGGTACGTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGCCAGGCATAGACAGAGGAGATAGCTCTGTTGGTACGTTGCTT  750

seq1  GCCTTGCCACCTGAGTTTCGTCTCTATCTCCCAAGCCAAACTGAGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCACCTGAGTTTCGTCTCTATCTCCCAAGCCAAACTGAGCCTGC  800

seq1  ATAGCTCATGCTTTGTCATCTTAGCTTCAGGGAGGATGAGAAAGGGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCATGCTTTGTCATCTTAGCTTCAGGGAGGATGAGAAAGGGAATC  850

seq1  CCCAGTGCTCACTGGGTAGCCAGCCAGTATATCAAAACTGGTGACCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCTCACTGGGTAGCCAGCCAGTATATCAAAACTGGTGACCTTCA  900

seq1  GCTTCAGAAAGAAAAAGTAAGAGGAAAGTCCCATGAGATGGTTCAATGAA  950
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GCTTCAGAAAGAAAAAGT-AGAGGAAAGTCTCATGAGATGGTTCAATGAA  949

seq1  TAAAAGGTACTTGCTGCCAGACTTGACATCCTGAGTTCAATGCTCTGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTACTTGCTGCCAGACTTGACATCCTGAGTTCAATGCTCTGGTT  999

seq1  GGACATAGTGAAAGAATAGAACTGACTCCTGCAATGTATCTTTGGACACC  1050
      |||||||||| ||||| ||||||||||||||| ||| |||||||||||||
seq2  GGACATAGTG-AAGAA-AGAACTGACTCCTGC-ATG-ATCTTTGGACACC  1045

seq1  CACACATGTGCTGTAGTATGTTCATGTCCCCACATGCATGTACACACATG  1100
      ||||||||||| |  |  |||||||||||||   |||||||  |||| ||
seq2  CACACATGTGCCG--GATTGTTCATGTCCCC---TGCATGT--ACACCTG  1088

seq1  TGAACGTGTAAATAGTTATGTAATTATAATTTAAATTAAAAACAGATGAA  1150
      || ||||||  ||||           ||  ||||||  |||   ||||  
seq2  TGGACGTGT--ATAG-----------TAGATTAAATGTAAA--CGATG--  1121

seq1  AAGCAGTTAAAAAAAAACATTTGATTTGACAGCCTCTCATCCATGCTCAA  1200
      |||| ||   ||||||||  | ||  |||| ||||| ||| |||||||| 
seq2  AAGCGGT---AAAAAAAC--TGGA--TGAC-GCCTC-CAT-CATGCTCA-  1160

seq1  ATATGTTCA  1209
        |||||||
seq2  --ATGTTCA  1167

seq1: chr16_79993583_79993660
seq2: B6Ng01-083M05.g_822_893 (reverse)

seq1  ACACACACACACACACACACACACGCACACACATGCACACACACACATGC  50
      ||||||||||||||||||||||||||||||    |||||||||      |
seq2  ACACACACACACACACACACACACGCACAC----GCACACACA------C  40

seq1  ACACACACATGCACACACA----CATACACAC  78
      || |||||||||||||| |    |||||||||
seq2  ACGCACACATGCACACATATGTTCATACACAC  72