BAC Information

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BAC

Clone NameB6Ng01-084B05
Chromosome16 (Build37)
Map Location 27,206,262 - 27,207,100
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneOstn, Uts2d, Ccdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084B05.bB6Ng01-084B05.g
ACCDH898148DH898149
length1,0411,091
definitionDH898148|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B05, 5' end.DH898149|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattacaaggtggtactgaaaatgaatgctaaaggcacaattatt
ctactgtgtgattgtacagatttatctctaatttactttgtatttgatcc
ctatttacaccaaggagattcttctttctatgtataagttacttctctta
gcatgatgatctctactatatttttatgaaaattatatgatttgtttttc
tctgtatctgtacaatgctattcatggatgtatgtacatttattacatgt
ctatatgataaattgtgtatgtatactacacatgaacatatgtacaaaca
tatatttttatccatcgatgagcactgcatggatattgtgcttagctaag
cagttaaaacagaacttgtgttaatttttatgtatattgactatgtttaa
ggtacatattcaggaggtctacagatgcatcatttggcacttacaacttt
gaaagctttacactgttttctatgtaaactactggcttgaatcttcattc
tcaatatagaaggacaagccccattcccttaccactattgttattactgt
tatttattataatggcagatttgactgaggtgagatagcgtatcagtata
tttttgattttcaattttcctgtagctaagaaggttgtatgtaccctcac
atatttattggtcatttgcccttctttgggaatggaaatgtctgtataga
acatttgactagctaggattggattatctcttcctttcctctaatttttt
tttttttagcttaatatattttctggatgttgtcctctgtaagacaaata
ctaggcaaaggatgtttgccactctagggtgtctctgagtcacttttgct
atttagaagcttttgaaatgtggtgtatttttacatgttaattgttttat
tttatctatctatctatctatctatctatctatctatctatctatctatc
tatctatctatctacctatttgatattttctatatttacatttcaatgtt
atcccaaaagtttcctataccttcccccacctgctccccta
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggaatttga
ttaggtcccatttgtcgattctcgaacttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tatacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccaacaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttattacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatcttcacttcctagtagagtcacgccaagatatttatataattgtga
ctattgagaggtgtgtttcctaattctttctcagcctgttattcttgata
gagaaagtcattgacttgtttgagttaatttatatcagctactcaccgaa
gctgatttcaggttagactctctggtaaaatttaggtcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27206262_27207100
seq2: B6Ng01-084B05.b_47_886 (reverse)

seq1  ACTCAGAGACACCCTAGAGTGGCAAACATCCTTTGCCTAGTATTTGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGACACCCTAGAGTGGCAAACATCCTTTGCCTAGTATTTGTCTT  50

seq1  ACAGAGGACAACATCCAGAAAATATATTAAGCT-AAAAAAAAAAAATTAG  99
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGAGGACAACATCCAGAAAATATATTAAGCTAAAAAAAAAAAAATTAG  100

seq1  AGGAAAGGAAGAGATAATCCAATCCTAGCTAGTCAAATGTTCTATACAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAAGAGATAATCCAATCCTAGCTAGTCAAATGTTCTATACAGA  150

seq1  CATTTCCATTCCCAAAGAAGGGCAAATGACCAATAAATATGTGAGGGTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTCCCAAAGAAGGGCAAATGACCAATAAATATGTGAGGGTAC  200

seq1  ATACAACCTTCTTAGCTACAGGAAAATTGAAAATCAAAAATATACTGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACCTTCTTAGCTACAGGAAAATTGAAAATCAAAAATATACTGATA  250

seq1  CGCTATCTCACCTCAGTCAAATCTGCCATTATAATAAATAACAGTAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATCTCACCTCAGTCAAATCTGCCATTATAATAAATAACAGTAATAA  300

seq1  CAATAGTGGTAAGGGAATGGGGCTTGTCCTTCTATATTGAGAATGAAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGGTAAGGGAATGGGGCTTGTCCTTCTATATTGAGAATGAAGAT  350

seq1  TCAAGCCAGTAGTTTACATAGAAAACAGTGTAAAGCTTTCAAAGTTGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCAGTAGTTTACATAGAAAACAGTGTAAAGCTTTCAAAGTTGTAA  400

seq1  GTGCCAAATGATGCATCTGTAGACCTCCTGAATATGTACCTTAAACATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAATGATGCATCTGTAGACCTCCTGAATATGTACCTTAAACATAG  450

seq1  TCAATATACATAAAAATTAACACAAGTTCTGTTTTAACTGCTTAGCTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATACATAAAAATTAACACAAGTTCTGTTTTAACTGCTTAGCTAAG  500

seq1  CACAATATCCATGCAGTGCTCATCGATGGATAAAAATATATGTTTGTACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATCCATGCAGTGCTCATCGATGGATAAAAATATATGTTTGTACA  550

seq1  TATGTTCATGTGTAGTATACATACACAATTTATCATATAGACATGTAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATGTGTAGTATACATACACAATTTATCATATAGACATGTAATA  600

seq1  AATGTACATACATCCATGAATAGCATTGTACAGATACAGAGAAAAACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATACATCCATGAATAGCATTGTACAGATACAGAGAAAAACAAA  650

seq1  TCATATAATTTTCATAAAAATATAGTAGAGATCATCATGCTAAGAGAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAATTTTCATAAAAATATAGTAGAGATCATCATGCTAAGAGAAGT  700

seq1  AACTTATACATAGAAAGAAGAATCTCCTTGGTGTAAATAGGGATCAAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATACATAGAAAGAAGAATCTCCTTGGTGTAAATAGGGATCAAATA  750

seq1  CAAAGTAAATTAGAGATAAATCTGTACAATCACACAGTAGAATAATTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAATTAGAGATAAATCTGTACAATCACACAGTAGAATAATTGTG  800

seq1  CCTTTAGCATTCATTTTCAGTACCACCTTGTAATGAATTC  839
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCATTCATTTTCAGTACCACCTTGTAATGAATTC  840