BAC Information

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BAC

Clone NameB6Ng01-084L19
Chromosome16 (Build37)
Map Location 36,026,377 - 36,097,317
singlet/doubletdoublet
Overlap geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58
Upstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneCsta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084L19.bB6Ng01-084L19.g
ACCDH898600DH898601
length1,1541,083
definitionDH898600|Mus musculus domesticus DNA, BAC clone: B6Ng01-084L19, 5' end.DH898601|Mus musculus domesticus DNA, BAC clone: B6Ng01-084L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,026,377 - 36,027,531)(36,096,214 - 36,097,317)
sequence
gaattcatctggctttggctttcctttgaggagaggcttttaaaaacagt
ttcagtctgattgctcatcaagggtctgtttgtttatatcttaagggcct
aattttggtagattacattaagatattttttttaggttatccagattttc
agtcataagctatgaaagaataaataaagctaattgttttcttattctaa
ctttgccgtggatttgtggtggtgaatgagtgtataacatatttagtact
gagagtgtgaaactaatagcttcagaatggctgctttaactacatagagg
tttattgagattgatagacttcaggtttcattaattttgataggtaatat
ttatttgaaaggtttttaaataataaaaaataaaataaaaacaatatttg
tgacaaaattgattttagaaagttctgtttagtcttttacttttctgtcg
tgtaagaatagaattttgtccccactggctcttcatctttgtgctatgag
gtcacagtaagaaggctcttgatacccagcaacatgagaaatgaatctct
gccccaccctgccccttcctgctctgcttttctccttttccctttttccc
ttccctcttccccctcctctcctctccccctccctcaattcttatcttcc
ttgaccttcctctgtccccccaaataggatttttctgtgtaacactggct
gtcttagaactcactctgtagaccttggtggcctcggaactcgaaaatcc
acctgcctctgctgggattaagaggcatgcgccactaccaccagactctt
ctttttgtaattgaaagacacttttagctgttttattgtttgagttagta
catttaatagggaatgcatggctttgtttttaattttgattcattggtac
ttgtaaagaaattttctattttaggtttttccttttagttcatataacta
agataagttattgttgtagttttattttgcatctattttgggtctttgtg
tgcatgtgtgtgtgatatctgtgtatgtcacatggtagtcagaggagaac
ttaatggggagtctctgtttttctactatatggtcatgggagaactgaat
tgagggtcatcagccaattgccagcgtaccttactcctcctttagctgtt
ttgc
gaattcacaaacagaagaggaaagccagcaaattaagagtatggcaaaga
cctgattgtgggagcacacaaaagggacacctaatctgagaggtaggcat
ggcttaatgaagtgacagtggagacaagaggtaagagctggtcaggggag
agaaagcaagctcagacatttgaagtgacattgggtcttggctaggagca
gaaggcagctcagtactagaggggaacagaggacactgtgcagtgatggc
aggagggagccaggacagtgaggacatctagggccatttaaagaatctgt
acttagctttaaggtagtgagcagtcattgaggggctttacacaggacat
cttttgcttgctagagttttaaactggaatggaaacaattcattcagtag
caattgtttctaagtaccaatggactagctatcccccccccccccattgt
gaattgggagggagatagtcacccaagccttgtcctctccctttcacagg
agtaaccctcaagtggacactgcatctaggagctggctgcttgaatcctc
ccctgaaactgcttgagaattcttataaaatgttgaaggaaaaatccgag
ttttcttcaattctagcaaactttatttctgcctggaacagcagttctca
acctgggtttcaacccctaactctttcacaggggtcacctaaaaccatcc
tcatatcaggtgtttacattatgattcataacagtagcaaaattacagtt
atgaagtagcagtgaaaataattttatggctgggggtcaccacaacaaga
ggagctctattacagggtcacagcatcaggaagattgagaaccactgaca
tagaggtacataactttaaactgctataaatataacactgaagctgataa
acaggtaacatggtaagaccaataaatgcagaatgtaaaaatgataaatc
ctaaaaccttatgatacaactcatgggctgccaggcgtgcagcacacact
tatcccagctctgggaggcagaggcagcagattctgagtcgagcagcttg
tctacaagtgaggtccaggaagcatggctatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36026377_36027531
seq2: B6Ng01-084L19.b_49_1202

seq1  GAATTCATCTGGCTTTGGCTTTCCTTTGAGGAGAGGCTTTTAAAAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGGCTTTGGCTTTCCTTTGAGGAGAGGCTTTTAAAAACAGT  50

seq1  TTCAGTCTGATTGCTCATCAAGGGTCTGTTTGTTTATATCTTAAGGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTGATTGCTCATCAAGGGTCTGTTTGTTTATATCTTAAGGGCCT  100

seq1  AATTTTGGTAGATTACATTAAGATATTTTTTTTAGGTTATCCAGATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGTAGATTACATTAAGATATTTTTTTTAGGTTATCCAGATTTTC  150

seq1  AGTCATAAGCTATGAAAGAATAAATAAAGCTAATTGTTTTCTTATTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAAGCTATGAAAGAATAAATAAAGCTAATTGTTTTCTTATTCTAA  200

seq1  CTTTGCCGTGGATTTGTGGTGGTGAATGAGTGTATAACATATTTAGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCGTGGATTTGTGGTGGTGAATGAGTGTATAACATATTTAGTACT  250

seq1  GAGAGTGTGAAACTAATAGCTTCAGAATGGCTGCTTTAACTACATAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGAAACTAATAGCTTCAGAATGGCTGCTTTAACTACATAGAGG  300

seq1  TTTATTGAGATTGATAGACTTCAGGTTTCATTAATTTTGATAGGTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGATTGATAGACTTCAGGTTTCATTAATTTTGATAGGTAATAT  350

seq1  TTATTTGAAAGGTTTTTAAATAATAAAAAATAAAATAAAAACAATATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAAAGGTTTTTAAATAATAAAAAATAAAATAAAAACAATATTTG  400

seq1  TGACAAAATTGATTTTAGAAAGTTCTGTTTAGTCTTTTACTTTTCTGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAATTGATTTTAGAAAGTTCTGTTTAGTCTTTTACTTTTCTGTCG  450

seq1  TGTAAGAATAGAATTTTGTCCCCACTGGCTCTTCATCTTTGTGCTATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAATAGAATTTTGTCCCCACTGGCTCTTCATCTTTGTGCTATGAG  500

seq1  GTCACAGTAAGAAGGCTCTTGATACCCAGCAACATGAGAAATGAATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTAAGAAGGCTCTTGATACCCAGCAACATGAGAAATGAATCTCT  550

seq1  GCCCCACCCTGCCCCTTCCTGCTCTGCTTTTCTCCTTTTCCCTTTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCCTGCCCCTTCCTGCTCTGCTTTTCTCCTTTTCCCTTTTTCCC  600

seq1  TTCCCTCTTCCCCCTCCTCTCCTCTCCCCCTCCCTCAATTCTTATCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTCCCCCTCCTCTCCTCTCCCCCTCCCTCAATTCTTATCTTCC  650

seq1  TTGACCTTCCTCTGTCCCCCCAAATAGGATTTTTCTGTGTAACACTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTCCTCTGTCCCCCCAAATAGGATTTTTCTGTGTAACACTGGCT  700

seq1  GTCTTAGAACTCACTCTGTAGACCTTGGTGGCCTCGGAACTCGAAAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAACTCACTCTGTAGACCTTGGTGGCCTCGGAACTCGAAAATCC  750

seq1  ACCTGCCTCTGCTGGGATTAAGAGGCATGCGCCACTACCACCAGACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCTGCTGGGATTAAGAGGCATGCGCCACTACCACCAGACTCTT  800

seq1  CTTTTTGTAATTGAAAGACACTTTTAGCTGTTTTATTGTTTGAGTTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTAATTGAAAGACACTTTTAGCTGTTTTATTGTTTGAGTTAGTA  850

seq1  CATTTAATAGGGAATGCATGGCTTTGTTTTTAATTTTGATTCATTGGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATAGGGAATGCATGGCTTTGTTTTTAATTTTGATTCATTGGTAC  900

seq1  TTGTAAAGAAATTTTCTATTTTAGGTTTTTCCTTTTAGTTCATATAACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGAAATTTTCTATTTTAGGTTTTTCCTTTTAGTTCATATAACTA  950

seq1  AGATAAGTTATTTGTTGTAGTTTTATTTTGCATCTATTTTGGGTCTTTGT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTTA-TTGTTGTAGTTTTATTTTGCATCTATTTTGGGTCTTTGT  999

seq1  GTGCATGTGTTGGTGTGATATCTGTGTATGTCACATGGTAGTCAGAGGAG  1050
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGT--GTGTGATATCTGTGTATGTCACATGGTAGTCAGAGGAG  1047

seq1  AACTTAAT-GGGAGTCTCTGTTTTTCCTACTATATGGGTCAT-GGAG-AC  1097
      |||||||| |||||||||||||||| ||||||||| |||||| |||| ||
seq2  AACTTAATGGGGAGTCTCTGTTTTT-CTACTATAT-GGTCATGGGAGAAC  1095

seq1  TGAATTGA-GGTCATCAGGCCAATTGCCAGCAAATACCTTACT-CTC--T  1143
      |||||||| |||||||| |||||||||||||   ||||||||| |||  |
seq2  TGAATTGAGGGTCATCA-GCCAATTGCCAGC--GTACCTTACTCCTCCTT  1142

seq1  TAGCTGTATTGC  1155
      ||||||| ||||
seq2  TAGCTGTTTTGC  1154

seq1: chr16_36096214_36097317
seq2: B6Ng01-084L19.g_69_1151 (reverse)

seq1  GTATAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  50
      |||||||| || || ||||||| ||||| ||||||| || ||||  ||||
seq2  GTATAGCCATG-CT-TCCTGGACCTCAC-TTGTAGA-CAAGCTG--CTCG  44

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGAGCTGGGATTAAAGGTG  100
       |||||| |||||| ||||||||||||||| |||||||||||   | |||
seq2  -ACTCAG-AATCTG-CTGCCTCTGCCTCCC-AGAGCTGGGAT---AAGTG  87

seq1  TGTGCTGCCACCGCCTGGCAGCCCATGAGGTTGTAATCATAAGGTTTTTA  150
      ||||||||   ||||||||||||||||| ||||| ||||||||| |||||
seq2  TGTGCTGC--ACGCCTGGCAGCCCATGA-GTTGT-ATCATAAGG-TTTTA  132

seq1  GGATTTATCATTTTTTACATTCTGCATTTTATTGGTCTTACCATGTTACC  200
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  GGATTTATCA-TTTTTACATTCTGCA-TTTATTGGTCTTACCATGTTACC  180

seq1  TGTTTTATCAGCTTCAGTGTTATATTTATAGCAGTTTAAAGTTATGTACC  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTATCAGCTTCAGTGTTATATTTATAGCAGTTTAAAGTTATGTACC  229

seq1  TCTATGTCAGTGGTTCTCAATCTTCCTGATGCTGTGACCCTGTAATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCAGTGGTTCTCAATCTTCCTGATGCTGTGACCCTGTAATAGAG  279

seq1  CTCCTCTTGTTGTGGTGACCCCCAGCCATAAAATTATTTTCACTGCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTGTTGTGGTGACCCCCAGCCATAAAATTATTTTCACTGCTACT  329

seq1  TCATAACTGTAATTTTGCTACTGTTATGAATCATAATGTAAACACCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTGTAATTTTGCTACTGTTATGAATCATAATGTAAACACCTGAT  379

seq1  ATGAGGATGGTTTTAGGTGACCCCTGTGAAAGAGTTAGGGGTTGAAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATGGTTTTAGGTGACCCCTGTGAAAGAGTTAGGGGTTGAAACCC  429

seq1  AGGTTGAGAACTGCTGTTCCAGGCAGAAATAAAGTTTGCTAGAATTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGAACTGCTGTTCCAGGCAGAAATAAAGTTTGCTAGAATTGAAG  479

seq1  AAAACTCGGATTTTTCCTTCAACATTTTATAAGAATTCTCAAGCAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCGGATTTTTCCTTCAACATTTTATAAGAATTCTCAAGCAGTTTC  529

seq1  AGGGGAGGATTCAAGCAGCCAGCTCCTAGATGCAGTGTCCACTTGAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGATTCAAGCAGCCAGCTCCTAGATGCAGTGTCCACTTGAGGGT  579

seq1  TACTCCTGTGAAAGGGAGAGGACAAGGCTTGGGTGACTATCTCCCTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGTGAAAGGGAGAGGACAAGGCTTGGGTGACTATCTCCCTCCCA  629

seq1  ATTCACAATGGGGGGGGGGGGGATAGCTAGTCCATTGGTACTTAGAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAATGGGGGGGGGGGGGATAGCTAGTCCATTGGTACTTAGAAACA  679

seq1  ATTGCTACTGAATGAATTGTTTCCATTCCAGTTTAAAACTCTAGCAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTACTGAATGAATTGTTTCCATTCCAGTTTAAAACTCTAGCAAGCA  729

seq1  AAAGATGTCCTGTGTAAAGCCCCTCAATGACTGCTCACTACCTTAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCCTGTGTAAAGCCCCTCAATGACTGCTCACTACCTTAAAGCT  779

seq1  AAGTACAGATTCTTTAAATGGCCCTAGATGTCCTCACTGTCCTGGCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGATTCTTTAAATGGCCCTAGATGTCCTCACTGTCCTGGCTCCC  829

seq1  TCCTGCCATCACTGCACAGTGTCCTCTGTTCCCCTCTAGTACTGAGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCATCACTGCACAGTGTCCTCTGTTCCCCTCTAGTACTGAGCTGC  879

seq1  CTTCTGCTCCTAGCCAAGACCCAATGTCACTTCAAATGTCTGAGCTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCCTAGCCAAGACCCAATGTCACTTCAAATGTCTGAGCTTGCT  929

seq1  TTCTCTCCCCTGACCAGCTCTTACCTCTTGTCTCCACTGTCACTTCATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCCTGACCAGCTCTTACCTCTTGTCTCCACTGTCACTTCATTA  979

seq1  AGCCATGCCTACCTCTCAGATTAGGTGTCCCTTTTGTGTGCTCCCACAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCCTACCTCTCAGATTAGGTGTCCCTTTTGTGTGCTCCCACAAT  1029

seq1  CAGGTCTTTGCCATACTCTTAATTTGCTGGCTTTCCTCTTCTGTTTGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTGCCATACTCTTAATTTGCTGGCTTTCCTCTTCTGTTTGTGA  1079

seq1  ATTC  1104
      ||||
seq2  ATTC  1083