BAC Information

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BAC

Clone NameB6Ng01-084O11
Chromosome16 (Build37)
Map Location 78,661,695 - 78,662,772
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
Downstream gene4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084O11.bB6Ng01-084O11.g
ACCDH898724DH898725
length1,1861,088
definitionDH898724|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O11, 5' end.DH898725|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcctgaggaataccgaatggcagagaaacacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgaga
ttccacttcactccagtcagaatggctaagatcaaaaactcaggtgacag
cagatgttggcgaggatgtggagaaaggggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctc
aaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctatttaaaaaaatgaatttatgaagttcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactctcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatgcccaagatataagatacaacttgccaaacgcatgaaattcaa
gaagaacgacgaccaaagtgtggacactttaccctttcttagaaatggga
acaaaacacccatagaaggagttacagagacaaaatttggagctgtgacg
aaaggatggaccatctagtgactgccatatgcagggatccatcccataat
cagcttccaaatgctgacaccatttgcatacactagcaagatttcgctga
aaggacccagttatagctctctcttgtgagactatgccggggcctagcaa
acacagtagtgggatgatcacagttcagctattggatgggtcacacgggc
tcctaatggagagctaggagaattacccaaggagctatagggaactgcaa
ccctataggtggacacaatatggactaccagtacccgggagctcttgtct
ttagctgcatatgtattcaaagatggcctagtcggcatcactggcaagga
gaggcccattggacttgccaactttatggcctagttacgggaacgccagg
ccaaaaagggggaatgtggtgggtatgggatattgt
gaattcccatggttatgcagtgcctcagtcacaaattactgaagtcagat
gtcgtaaaaatttttgttgtttctttttctctctctttttccctttggtt
gtgtaatcttacagacttgtacttttattcttttgagagactgcattatt
tttttctactcttaacacagacacacagacacacacatacagacacacac
acacacagacacacacacacagacacacacagacacacacagacacacac
agacacacacacacagacacacacacacacacacacacacacacacacac
acacacacagacactactactcacatgagaaaatcttgcatttggaaaga
cttccagtgaatagagttaagccagcactcacagtacttggggagccatg
agtatatctcaactctatctaatgggactttagaattcagacaccagaaa
tctgagatgatagctattttctttcagtttaggcttcaatttcctgtgct
gtcagagaagtgatatctttgatttattgaaatctgtatcgggattggca
catagaagctatggttggactcagctcaactgtgtatttaagcacgctga
tgatcatgcagggattgtctttcaaggacatagtagagagtatctatcac
caagcctcaatattgaatctttaacagaatatgaggtgtcactgagccca
ggctgtgagactggaagacagcaggagatagaaaataaaactgagaaacg
atgattatttgtcattaaaagtttagggaatgcaataacaaatctaagag
tgttgtaaatataacagggaatttgcaaaggataatgccctgtaaagcat
tgcgtgccttttctgaaaaagacaaaaggtttcagagaaaatctaaaaag
atgttgcagaaaattaactcatattacctattatgaataaacaatggtat
gtaggaggtctgtcttttttatctaaatcaatggagattgaacacagtgg
ggaaacatcataaaatgatgatgaaaaagtatagtaaacttataatgtac
acattgttccttaaaaaggggaggtggatgtagaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78661695_78662772
seq2: B6Ng01-084O11.g_71_1158

seq1  GAATTCCCATGGTTATGCAGTGCCTCAGTCACAAATTACTGAAGTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGGTTATGCAGTGCCTCAGTCACAAATTACTGAAGTCAGAT  50

seq1  GTCGTAAAAATTTTTGTTGTTTCTTTTTCTCTCTCTTTTTCCCTTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTAAAAATTTTTGTTGTTTCTTTTTCTCTCTCTTTTTCCCTTTGGTT  100

seq1  GTGTAATCTTACAGACTTGTACTTTTATTCTTTTGAGAGACTGCATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATCTTACAGACTTGTACTTTTATTCTTTTGAGAGACTGCATTATT  150

seq1  TTTTTCTACTCTTAACACAGACACACAGACACACACATACAGACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACTCTTAACACAGACACACAGACACACACATACAGACACACAC  200

seq1  ACACACAGACACACACACACAGACACACACAGACACACACAGACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACACACACAGACACACACAGACACACACAGACACACAC  250

seq1  AGACACACACACACAGACACACACACACACACACACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACACACAGACACACACACACACACACACACACACACACACAC  300

seq1  ACACACACAGACACTACTACTCACATGAGAAAATCTTGCATTTGGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGACACTACTACTCACATGAGAAAATCTTGCATTTGGAAAGA  350

seq1  CTTCCAGTGAATAGAGTTAAGCCAGCACTCACAGTACTTGGGGAGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTGAATAGAGTTAAGCCAGCACTCACAGTACTTGGGGAGCCATG  400

seq1  AGTATATCTCAACTCTATCTAATGGGACTTTAGAATTCAGACACCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCTCAACTCTATCTAATGGGACTTTAGAATTCAGACACCAGAAA  450

seq1  TCTGAGATGATAGCTATTTTCTTTCAGTTTAGGCTTCAATTTCCTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGATAGCTATTTTCTTTCAGTTTAGGCTTCAATTTCCTGTGCT  500

seq1  GTCAGAGAAGTGATATCTTTGATTTATTGAAATCTGTATCGGGATTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAAGTGATATCTTTGATTTATTGAAATCTGTATCGGGATTGGCA  550

seq1  CATAGAAGCTATGGTTGGACTCAGCTCAACTGTGTATTTAAGCACGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGCTATGGTTGGACTCAGCTCAACTGTGTATTTAAGCACGCTGA  600

seq1  TGATCATGCAGGGATTGTCTTTCAAGGACATAGTAGAGAGTATCTATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGCAGGGATTGTCTTTCAAGGACATAGTAGAGAGTATCTATCAC  650

seq1  CAAGCCTCAATATTGAATCTTTAACAGAATATGAGGTGTCACTGAGCCAA  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAGCCTCAATATTGAATCTTTAACAGAATATGAGGTGTCACTGAGCCCA  700

seq1  GGCTGTGAGACTGGAAGACAGCAGGAGATAGAAAATAAAACTGAGAAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGACTGGAAGACAGCAGGAGATAGAAAATAAAACTGAGAAACG  750

seq1  ATGATTATTTGTCATTAAAAGTTTAAGGAATGCAATAACAAATCTAAGAG  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGATTATTTGTCATTAAAAGTTTAGGGAATGCAATAACAAATCTAAGAG  800

seq1  TGTAGTAAATATAACAGGGAA-TTGCAAAGGATAATG-CCTGT-AAGCAC  847
      ||| ||||||||||||||||| ||||||||||||||| ||||| ||||| 
seq2  TGTTGTAAATATAACAGGGAATTTGCAAAGGATAATGCCCTGTAAAGCAT  850

seq1  TGCGTGCC-TTTCTG-AAAAGACAAA--GGTTCAGAGAAAATCT-AAAAG  892
      |||||||| |||||| ||||||||||  | |||||||||||||| |||||
seq2  TGCGTGCCTTTTCTGAAAAAGACAAAAGGTTTCAGAGAAAATCTAAAAAG  900

seq1  ATG-TGCAGAAAATTAACTCATATTACCTA-TATGAAT-AACAATGGTAT  939
      ||| |||||||||||||||||||||||||| ||||||| |||||||||||
seq2  ATGTTGCAGAAAATTAACTCATATTACCTATTATGAATAAACAATGGTAT  950

seq1  GTAGGAGGTCTGTC-TTTTTATCTAAATCAATGGAGATTGGAACACAGTG  988
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GTAGGAGGTCTGTCTTTTTTATCTAAATCAATGGAGATT-GAACACAGTG  999

seq1  GGGAAACATCATAAAATGATGAATGAAAAAGTATAGTAAACTTATAATTG  1038
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GGGAAACATCATAAAATGATG-ATGAAAAAGTATAGTAAACTTATAA-TG  1047

seq1  TACACATAG-TCCTTTAAAAAGGGAGGTAGATGTAGAAGTT  1078
      ||||||| | ||||| |||| ||||||| ||||||||||||
seq2  TACACATTGTTCCTTAAAAAGGGGAGGTGGATGTAGAAGTT  1088