BAC Information

Click to search

BAC

Clone NameB6Ng01-085N16
Chromosome1 (Build37)16 (Build37)
Map Location 172,056,265 - 172,056,38256,118,305 - 56,119,499
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571
Downstream geneUap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085N16.bB6Ng01-085N16.g
ACCDH899410DH899411
length2501,157
definitionDH899410|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N16, 5' end.DH899411|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(172,056,265 - 172,056,382)(56,118,305 - 56,119,499)
sequence
tgccccctgatttcatattagtcattgccaagggccagcctcagcttgga
gaggggttttgagagaaggggtgtttgagaatggcaaaacaaatgactcg
aagccaaattgtgggtccaagctgatggcttatgttcggctcaagacagt
ttccagattgtactctctctgtctctctctgtctctgtctctgtctctgt
ctctgtctctgtctctgtgcgtgtgtgtgtgtgtgtgtgtgtatgtgtgt

gaattccaaatactgttcttattttatgatttctttaggccagtattatt
ctagttgagtgataatgtgttcatttcaattttataaacggaaaaagaaa
cctgtgaagtttagggctagggacgtggctttgtgagtaaagtgctgaga
aagagacatgagagcttgatgttgatctcatgtactgggatccctcaccc
atattaaaagcaggatgtagtggggtgggtttgcagtcacagtgctgggg
aggacaagtaggagggacactggggctcactgactgcccagcctagctta
attggcaagccctaggccccaagtgggggtctttgttaaaaaaataatgt
gtgcagctcccaaggaacaaaacctacagttgtcctcttgtcttctacat
gcacacatatacacatgtgtgtacatattctcccccaacatgcatccatc
tacacacaaacacatacatattcctgcccccacacatacatatctgtata
cctacacacacacaaagagcaaaaaggaaatctgtggatctcttaaagtt
atgggccagtgagatggccgaggggtaagaacactttgtgttcaagcttg
acctgagtttaatccctgaaattcaccatggaagactggaactaacttct
gaaggttgtcttctaccctatacatgtatataataataaacaaatgtttt
aaaagaagagaataaaaaaggaaaaactaacagttcttttatagtttgaa
ttatgtcgtctgagaaatgagtggatttataatatcccttgttaaaatgc
aacacagtatattttaggatgatattaatgtgaatttcacaaaaatgaaa
gtggattagtattgcaacttcctatattgcagctatattaagaggtataa
ttacagttttcagtgtactttattagaaatggctcttgagatgactatat
attatatgtcattggttttccatgtctcccatatttgtactattctactt
gctgtacttttctaaattattattattaatgtatttgaatacactgtagc
tgtctcagacacttcagaatagcatcagattccatacgatggtgtgagca
catgcatggctgggatgatcggacctggtaagcgtcagtcttaactgctt
accatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172056265_172056382
seq2: B6Ng01-085N16.b_216_302 (reverse)

seq1  CACACATATCTCAAACACACACACACACACACACACACACAGAGAGAGAG  50
      |||||||       |||||||||||||||||||||| |||||||| ||||
seq2  CACACAT-------ACACACACACACACACACACACGCACAGAGACAGAG  43

seq1  AGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACGGAGACAGAGAG  100
      | |||||||||||||||||||||||||||||        |||||||||||
seq2  ACAGAGACAGAGACAGAGACAGAGACAGAGA--------GAGACAGAGAG  85

seq1  AGACACACACAGAGAGAG  118
      ||                
seq2  AG----------------  87

seq1: chr16_56118305_56119499
seq2: B6Ng01-085N16.g_70_1226

seq1  GAATTCCAAATACTGTTCTTATTTTATGATTTCTTTAGGCCAGTATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATACTGTTCTTATTTTATGATTTCTTTAGGCCAGTATTATT  50

seq1  CTAGTTGAGTGATAATGTGTTCATTTCAATTTTATAAACGGAAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGAGTGATAATGTGTTCATTTCAATTTTATAAACGGAAAAAGAAA  100

seq1  CCTGTGAAGTTTAGGGCTAGGGACGTGGCTTTGTGAGTAAAGTGCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAAGTTTAGGGCTAGGGACGTGGCTTTGTGAGTAAAGTGCTGAGA  150

seq1  AAGAGACATGAGAGCTTGATGTTGATCTCATGTACTGGGATCCCTCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATGAGAGCTTGATGTTGATCTCATGTACTGGGATCCCTCACCC  200

seq1  ATATTAAAAGCAGGATGTAGTGGGGTGGGTTTGCAGTCACAGTGCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAGCAGGATGTAGTGGGGTGGGTTTGCAGTCACAGTGCTGGGG  250

seq1  AGGACAAGTAGGAGGGACACTGGGGCTCACTGACTGCCCAGCCTAGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGTAGGAGGGACACTGGGGCTCACTGACTGCCCAGCCTAGCTTA  300

seq1  ATTGGCAAGCCCTAGGCCCCAAGTGGGGGTCTTTGTTAAAAAAATAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAGCCCTAGGCCCCAAGTGGGGGTCTTTGTTAAAAAAATAATGT  350

seq1  GTGCAGCTCCCAAGGAACAAAACCTACAGTTGTCCTCTTGTCTTCTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCTCCCAAGGAACAAAACCTACAGTTGTCCTCTTGTCTTCTACAT  400

seq1  GCACACATATACACATGTGTGTACATATTCTCCCCCAACATGCATCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATATACACATGTGTGTACATATTCTCCCCCAACATGCATCCATC  450

seq1  TACACACAAACACATACATATTCCTGCCCCCACACATACATATCTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAAACACATACATATTCCTGCCCCCACACATACATATCTGTATA  500

seq1  CCTACACACACACAAAGAGCAAAAAGGAAATCTGTGGATCTCTTAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACACACACAAAGAGCAAAAAGGAAATCTGTGGATCTCTTAAAGTT  550

seq1  ATGGGCCAGTGAGATGGCCGAGGGGTAAGAACACTTTGTGTTCAAGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCAGTGAGATGGCCGAGGGGTAAGAACACTTTGTGTTCAAGCTTG  600

seq1  ACCTGAGTTTAATCCCTGAAATTCACCATGGAAGACTGGAACTAACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTTTAATCCCTGAAATTCACCATGGAAGACTGGAACTAACTTCT  650

seq1  GAAGGTTGTCTTCTACCCTATACATGTATATAATAATAAACAAATGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTGTCTTCTACCCTATACATGTATATAATAATAAACAAATGTTTT  700

seq1  AAAAGAAGAGAATAAAAAAGGAAAAACTAACAGTTCTTTTATAGTTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGAATAAAAAAGGAAAAACTAACAGTTCTTTTATAGTTTGAA  750

seq1  TTATGTCGTCTGAGAAATGAGTGGATTTATAATAT-CCTTGTTAAAATGC  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTATGTCGTCTGAGAAATGAGTGGATTTATAATATCCCTTGTTAAAATGC  800

seq1  AACACAGTATATTTTAGGATGATATTAATGTGAATTTCACAAAAATGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTATATTTTAGGATGATATTAATGTGAATTTCACAAAAATGAAA  850

seq1  GTGGATTAGTATTGCAACTTCCTATATTGCAGCTATATTAAGAGGTATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTAGTATTGCAACTTCCTATATTGCAGCTATATTAAGAGGTATAA  900

seq1  TTACAAGTTTTCAGTGTACTTTATTAGAAATGGCTCTTGAGATGACTTAT  949
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAC-AGTTTTCAGTGTACTTTATTAGAAATGGCTCTTGAGATGAC-TAT  948

seq1  ATATTAATATGTCATTGGTTTTCCAATGTCTCCCCATATTTGTACCTTAT  999
      ||||| |||||||||||||||||| |||||| |||||||||||||  |||
seq2  ATATT-ATATGTCATTGGTTTTCC-ATGTCT-CCCATATTTGTAC--TAT  993

seq1  TCCTACCTTGCTGTACTTTTTTCCTAAATTTTATTTATTTATTTAATGTA  1049
      | ||| ||||||||||||||   ||||||| |  |||     ||||||||
seq2  T-CTA-CTTGCTGTACTTTT---CTAAATTATTATTA-----TTAATGTA  1033

seq1  TATGAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGAT  1099
      | ||| ||||||||||||||| ||||||||| ||||| |  |||||||||
seq2  TTTGAATACACTGTAGCTGTC-TCAGACACTTCAGAATA--GCATCAGAT  1080

seq1  CCCATTACAGATGGTTGTGAGCCACCATGCAGTGGCTGGGAATTGAACTC  1149
       ||| ||| ||||| |||||||   |||||| |||||||||  ||| |  
seq2  TCCA-TAC-GATGG-TGTGAGC--ACATGCA-TGGCTGGGA--TGATC--  1120

seq1  AGGACATCTGGAAGAGCAGTCAGTGCTCTTAACTGCTAAACCATCT  1195
       ||||  |||| | ||| |||||   |||||||||||  |||||||
seq2  -GGAC--CTGGTA-AGC-GTCAG---TCTTAACTGCT-TACCATCT  1157