BAC Information

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BAC

Clone NameB6Ng01-085O13
Chromosome16 (Build37)
Map Location 54,111,288 - 54,184,531
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433027
Downstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085O13.bB6Ng01-085O13.g
ACCDH899452DH899453
length1,1701,135
definitionDH899452|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O13, 5' end.DH899453|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,183,346 - 54,184,531)(54,111,288 - 54,112,433)
sequence
gaattcaatccttgctgatggcttacaataatatactgtccaacatgtaa
caaactaatttactgataggacaataaatatattaacaataaatattaga
atcaagtgaagagaagataatattatatgttagccacagatatatgtatt
aaattttccatgattcaaaagcttgtgtataatctcatcaaaatcaagat
attcagggttgatttggtatttacttttaatactctttcactatgcagta
actgacttgtaacagattattttccttattctttttctttcaaaacaatt
agcttaaattagaaactgatgacaaagagtagatacaaaagattcaagta
gatgtcacagcttcagttcctgtataaaaaaaaaaaaataatgagcacaa
tgcaaggcacttcaaatcttatttccttcagaaagagagtttaatcagag
tgtaatgagcattgaaattaataaattaaaaataaatgtccataagggaa
aagtgtatttcaatcagacagtaattatgttttcaactttgtaaattaat
tccccaaatgaatatatttcagtgtactcaatctattatcatttcatctt
attttaagcttagtgtttttaacttgactaatccagattataagaaaaat
taagaagtgaatacttaattaaaatatctagtaacattccatccacttga
caatatgtcatcaaggttttaaatgttgaagaccagtaatcatttttatg
gttgatatagaaataaatgaagcacctgtatttgtgttagacaacccatt
gagatattagtatatcgacttattgaaggcagagagaacatgttaaaata
cgaaatcactaaattgatacaagcacatattttctcatttaaagataagt
cagtgtggggcttagttgtttaaattcaaagtctgcttaacagcctgatt
ttagtatagtattgaaatataattttgtggtcaagcaaacttcttccatt
tgtagattttttaagaatatgaggaaaaattatctcccataatagtcttg
acgaaaaagaaatgagacattttctatggagcctttatttatccaaagaa
gcacaatgaacaatttataattatcggccacaaatatactgctttctgac
agcattttgggttgtgtttc
gaattcccctaaattcccttcttaaatgtctctttatgccttcttcccct
tctcccttcttaatttatttgttgactgttccccaacctagattttgctt
aatctttcatcaacttatattagtcatttcctaactgatgatgaattagc
ttcaccgacaccttgaaaatttaatggaatttgtattgcaagactttcaa
attatttcatattttaaacattggtagaactcatattctacccttttctg
gagttttcaattcctatttatatattttaataacataatacacattatat
cagttattataaaatgttcatcagtgaggagccacaggcatcactaattt
tattaagtgttttattatcactttattgtgcttatttcaaagtttaacca
tggatttaccaacaaatattgtctgaaacactttttcaaacggtatatta
ataaataacttagtggtggtgtgttggttggcagaaggagtaccatgccc
ttatctgcagaattaagactcagatatatattaagttaaacacattttag
ctaaaaattatttttctttcaaagcttttcaatcttaaaacaccctaata
gttcataaattagctgatatttattaatctaatttgattcttatcaaatt
cctgaaaaatattacaatttaaccaatagggattaaaattcatatttttc
ataatactttatagtatcatttattagtatactactagcaaatatactaa
gcaaaatttgaattgcactatgtgtagttattatttcatgtgttgctgcc
aaagcaaccataagttacaatgatttataatgcataaagctaaaaggaaa
catatttccttttttcttcatgaaactaatctgcatatagtaacacagta
aagatacacactggtttttttcgctgtgaaccaggtccacatgtctacct
caaatcttttccaggagtagactcactaattcaaggagtcagaaacaagt
gaatttcttggagttagaattaacagtgagcactgtggtccaggatacag
gagggagattcagaggcctagaaagactccagagacagcataagttgccc
atttattgattgtgcagtcaaggtttttataagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54183346_54184531
seq2: B6Ng01-085O13.b_46_1215 (reverse)

seq1  GAAA-ACAACAACAAAATGCATCGTGACAGAAAGCAGTAATATAGTGAGC  49
      |||| |||||  ||||||||    || ||||||||||||   | ||| ||
seq2  GAAACACAAC-CCAAAATGC----TGTCAGAAAGCAGTATATTTGTG-GC  44

seq1  AGATTAAATATTAAAAAATAGTATCATAGTGCTTCTTTGTGATAAATAAA  99
       || ||| |||    |||| || |||| ||||||||||| ||||||||||
seq2  CGA-TAATTAT----AAATTGT-TCATTGTGCTTCTTTG-GATAAATAAA  87

seq1  GGCTTCATAGAAAATGTCTCATTTCTTTTTCGTCATGACTATTATGTGAG  149
      |||| |||||||||||||||||||||||||||||| |||||||||| |||
seq2  GGCTCCATAGAAAATGTCTCATTTCTTTTTCGTCAAGACTATTATGGGAG  137

seq1  ATAAATTTTTCCTCATATTTCTTTGAAAAATCTACAAATGGAAGAAGTTT  199
      || ||||||||||||||||   || |||||||||||||||||||||||||
seq2  AT-AATTTTTCCTCATATT--CTTAAAAAATCTACAAATGGAAGAAGTTT  184

seq1  GCTTGACCACAAAATTATA-TTCAATACCTATACTAAAATCAGGCTGTTA  248
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GCTTGACCACAAAATTATATTTCAATA-CTATACTAAAATCAGGCTGTTA  233

seq1  AGCAGACTTTGAATTTAAACAACTAAGCCCCACACTGACTTATCTTTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTTTGAATTTAAACAACTAAGCCCCACACTGACTTATCTTTAAA  283

seq1  TGAGAAAATATGTGCTTGTATCAATTTAGTGATTTCGTATTTTAACATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATATGTGCTTGTATCAATTTAGTGATTTCGTATTTTAACATGT  333

seq1  TCTCTCTGCCTTCAATAAGTCGATATACTAATATCTCAATGGGTTGTCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGCCTTCAATAAGTCGATATACTAATATCTCAATGGGTTGTCTA  383

seq1  ACACAAATACAGGTGCTTCATTTATTTCTATATCAACCATAAAAATGATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATACAGGTGCTTCATTTATTTCTATATCAACCATAAAAATGATT  433

seq1  ACTGGTCTTCAACATTTAAAACCTTGATGACATATTGTCAAGTGGATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTTCAACATTTAAAACCTTGATGACATATTGTCAAGTGGATGGA  483

seq1  ATGTTACTAGATATTTTAATTAAGTATTCACTTCTTAATTTTTCTTATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTAGATATTTTAATTAAGTATTCACTTCTTAATTTTTCTTATAA  533

seq1  TCTGGATTAGTCAAGTTAAAAACACTAAGCTTAAAATAAGATGAAATGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTAGTCAAGTTAAAAACACTAAGCTTAAAATAAGATGAAATGAT  583

seq1  AATAGATTGAGTACACTGAAATATATTCATTTGGGGAATTAATTTACAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTGAGTACACTGAAATATATTCATTTGGGGAATTAATTTACAAA  633

seq1  GTTGAAAACATAATTACTGTCTGATTGAAATACACTTTTCCCTTATGGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAACATAATTACTGTCTGATTGAAATACACTTTTCCCTTATGGAC  683

seq1  ATTTATTTTTAATTTATTAATTTCAATGCTCATTACACTCTGATTAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTAATTTATTAATTTCAATGCTCATTACACTCTGATTAAACT  733

seq1  CTCTTTCTGAAGGAAATAAGATTTGAAGTGCCTTGCATTGTGCTCATTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGAAGGAAATAAGATTTGAAGTGCCTTGCATTGTGCTCATTAT  783

seq1  TTTTTTTTTTTTATACAGGAACTGAAGCTGTGACATCTACTTGAATCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTATACAGGAACTGAAGCTGTGACATCTACTTGAATCTTT  833

seq1  TGTATCTACTCTTTGTCATCAGTTTCTAATTTAAGCTAATTGTTTTGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTACTCTTTGTCATCAGTTTCTAATTTAAGCTAATTGTTTTGAAA  883

seq1  GAAAAAGAATAAGGAAAATAATCTGTTACAAGTCAGTTACTGCATAGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAATAAGGAAAATAATCTGTTACAAGTCAGTTACTGCATAGTGA  933

seq1  AAGAGTATTAAAAGTAAATACCAAATCAACCCTGAATATCTTGATTTTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTAAAAGTAAATACCAAATCAACCCTGAATATCTTGATTTTGA  983

seq1  TGAGATTATACACAAGCTTTTGAATCATGGAAAATTTAATACATATATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATACACAAGCTTTTGAATCATGGAAAATTTAATACATATATCT  1033

seq1  GTGGCTAACATATAATATTATCTTCTCTTCACTTGATTCTAATATTTATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAACATATAATATTATCTTCTCTTCACTTGATTCTAATATTTATT  1083

seq1  GTTAATATATTTATTGTCCTATCAGTAAATTAGTTTGTTACATGTTGGAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATATTTATTGTCCTATCAGTAAATTAGTTTGTTACATGTTGGAC  1133

seq1  AGTATAAAAATTGTAAGCCATCAGCAAGGATTGAATTC  1186
      ||||| |  |||||||||||||||||||||||||||||
seq2  AGTAT-ATTATTGTAAGCCATCAGCAAGGATTGAATTC  1170

seq1: chr16_54111288_54112433
seq2: B6Ng01-085O13.g_71_1205

seq1  GAATTCCCCTAAATTCCCTTCTTAAATGTCTCTTTATGCCTTCTTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAAATTCCCTTCTTAAATGTCTCTTTATGCCTTCTTCCCCT  50

seq1  TCTCCCTTCTTAATTTATTTGTTGACTGTTCCCCAACCTAGATTTTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCTTAATTTATTTGTTGACTGTTCCCCAACCTAGATTTTGCTT  100

seq1  AATCTTTCATCAACTTATATTAGTCATTTCCTAACTGATGATGAATTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCATCAACTTATATTAGTCATTTCCTAACTGATGATGAATTAGC  150

seq1  TTCACCGACACCTTGAAAATTTAATGGAATTTGTATTGCAAGACTTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCGACACCTTGAAAATTTAATGGAATTTGTATTGCAAGACTTTCAA  200

seq1  ATTATTTCATATTTTAAACATTGGTAGAACTCATATTCTACCCTTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCATATTTTAAACATTGGTAGAACTCATATTCTACCCTTTTCTG  250

seq1  GAGTTTTCAATTCCTATTTATATATTTTAATAACATAATACACATTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCAATTCCTATTTATATATTTTAATAACATAATACACATTATAT  300

seq1  CAGTTATTATAAAATGTTCATCAGTGAGGAGCCACAGGCATCACTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTATAAAATGTTCATCAGTGAGGAGCCACAGGCATCACTAATTT  350

seq1  TATTAAGTGTTTTATTATCACTTTATTGTGCTTATTTCAAAGTTTAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTGTTTTATTATCACTTTATTGTGCTTATTTCAAAGTTTAACCA  400

seq1  TGGATTTACCAACAAATATTGTCTGAAACACTTTTTCAAACGGTATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTACCAACAAATATTGTCTGAAACACTTTTTCAAACGGTATATTA  450

seq1  ATAAATAACTTAGTGGTGGTGTGTTGGTTGGCAGAAGGAGTACCATGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACTTAGTGGTGGTGTGTTGGTTGGCAGAAGGAGTACCATGCCC  500

seq1  TTATCTGCAGAATTAAGACTCAGATATATATTAAGTTAAACACATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGCAGAATTAAGACTCAGATATATATTAAGTTAAACACATTTTAG  550

seq1  CTAAAAATTATTTTTCTTTCAAAGCTTTTCAATCTTAAAACACCCTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTATTTTTCTTTCAAAGCTTTTCAATCTTAAAACACCCTAATA  600

seq1  GTTCATAAATTAGCTGATATTTATTAATCTAATTTGATTCTTATCAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAATTAGCTGATATTTATTAATCTAATTTGATTCTTATCAAATT  650

seq1  CCTGAAAAATATTACAATTTAACCAATAGGGATTAAAATTCATATTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAATATTACAATTTAACCAATAGGGATTAAAATTCATATTTTTC  700

seq1  ATAATACTTTATAGTATCATTTATTAGTATACTACTAGCAAATATACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTTTATAGTATCATTTATTAGTATACTACTAGCAAATATACTAA  750

seq1  GCAAAATTTGAATTGCACTATGTGTAGTTATTATTTCATGTGTTGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTTGAATTGCACTATGTGTAGTTATTATTTCATGTGTTGCTGCC  800

seq1  AAAGCAACCATAAGTTACAATGATTTATAATGCATAAAGCTAAAAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACCATAAGTTACAATGATTTATAATGCATAAAGCTAAAAGGAAA  850

seq1  CATATTTCCTTTTTTCTTCATGAAACTAATCTGCATATAGTAACACAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCCTTTTTTCTTCATGAAACTAATCTGCATATAGTAACACAGTA  900

seq1  AAGAATACACACTGGTTTTTTTCGCTGTGAACCAGGTCCACATGTCTACC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-ATACACACTGGTTTTTTTCGCTGTGAACCAGGTCCACATGTCTACC  949

seq1  TCAAATCTTTTCCAGGAGTAAGACTCACTAATTCAAGGAGTCAGAACACA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||   |
seq2  TCAAATCTTTTCCAGGAGT-AGACTCACTAATTCAAGGAGTCAGAAACAA  998

seq1  GTGAATTTCTT-GAGTTAGATTTAACAGTGAGCAACTGTGGGAACCAGGA  1049
      ||||||||||| |||||||| |||||||||||| |||||||   ||||||
seq2  GTGAATTTCTTGGAGTTAGAATTAACAGTGAGC-ACTGTGG--TCCAGGA  1045

seq1  TACAGGAGGAAGAATCAAGAGCCCTAGAAAGACTCCAGAGACCAGCATAA  1099
      ||||||||| ||| || |||| ||||||||||||||||||| |||||| |
seq2  TACAGGAGGGAGATTC-AGAGGCCTAGAAAGACTCCAGAGA-CAGCAT-A  1092

seq1  AGTTGCACATTTATTGAATTGTGCAGCTCAAGTGTTTTTATATAGCC  1146
      |||||| ||||||||| ||||||||| ||||| ||||||||| ||||
seq2  AGTTGCCCATTTATTG-ATTGTGCAG-TCAAG-GTTTTTATA-AGCC  1135