BAC Information

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BAC

Clone NameB6Ng01-086I19
Chromosome1 (Build37)16 (Build37)
Map Location 4,259,470 - 4,260,52555,386,027 - 55,386,297
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792, LOC619785
Downstream geneRp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086I19.bB6Ng01-086I19.g
ACCDH899914DH899915
length1,056993
definitionDH899914|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I19, 5' end.DH899915|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,259,470 - 4,260,525)(55,386,027 - 55,386,297)
sequence
gaattcaactaacctgagataaaaattcactgacccccaacccctgaatg
gggcttgggcagtgacctagactgtagcagtatggatttgaagctgacta
gatttaaggggcctacagagaacagtagagaggcatctatgcccgagaga
gcctttctgtgtttgcttccctgtatccttcgctccctaccctgcctccc
caatctccaaacagggacacagacaactcagatctttttacactcagctt
ctccctgtgaataaatgattgggagacaaagatacaaaggaatccagacc
aggtaattcatttctataaagagagaattataaccttttgataattgaag
aaggtataaagatatagtgctctaacagatctcacaggatactcatattc
tgtctaacgtgaattccatgggaattttgggtttaagttctggtttgaca
agctgcctcttataagtaggtaaagtacctaaagatgggaaatttcacct
gtggttcagaaccagatagggaatattagtcactgactccaagtagagag
agcagtgacaatcacctgctatgaacaggtattaattaatagaagtttgt
tcctctaggtaaagagcataacagatattataataggtgttaattaaata
aatgtctgtggctcctggtagagagcacaacagacaggatggctactcta
ggcagagagcttattaattattagaaatttcatgttcaaaattggatagg
gaatattagtcaccgactccaagtagagagagcagtgataatggcctgct
atgaacagatattaattaatagaagtctgtggctccaggtagagagcata
acagatacgtattatactgggggttaattaaataaatgtttgtggctcaa
ggtagaaagtgccctaataagtcttacaggatactcatattctgtataac
gtgggctccacaggaattttgggtttaaatcctgatttgacaagctgctt
cttataagcaggtatagaaaggaaagaaggggaaggaaggagagtaatgg
aggggg
gaattccaaggaaataaaaggccaccagagggcactgtatttattctaga
agttgctcattggagataatcaattgtaggaatgagaaccctagcatata
caatttaaaccagaattcagacctttccatttaaaaataaatttaaaata
tcttttttgagccacatgtggtggtgtgtgcctgtgatttcatacttagg
aagctcaggaaggaggatcctggatttgattattgggtgaattgcatact
gaatcccatgctagcctagtattaagaccctgtctcataaaacaagaaac
atccaatcaaagaagaaaatgtttaatatttaaaaagtggtcttctatct
tgttgattttctcaaagaaccagctcctggtttggttgattctttgtagt
ttttttttttttacttggcggatttcagtcctgagtttgattatttccta
ccgtctactcctctcgtgtgtatttgcttctttttgttctagatctttca
ggtgtgctgttaagctgctagtgtattctctctccagtttctttttggat
gcatttagagcaatgagctttcctcttagcactgctttcattgggcccca
taagttttggtatgatgtgccttcattttcactaaattctaagaagtctt
taatttctttctttatttctttcttgaccaagttattattgagtagaccg
ttgttcagcttccatgtatatgtgttctttctattgtttttgttgttatt
gaaggcaaaccttagtctgtggtgatctgataggatgcatgggattattt
caatcttcttgtatctattgaggcctgttttgtgaccaattatatgatcg
attttggagaagtaccatgaggtgctgagaagaaggtatgttcttttgtt
taagattaaatgttctatagatatctgttaaatccattgtttcataactt
ctgttagtttcactgtgtcctgtttagtttctgtttccatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_4259470_4260525
seq2: B6Ng01-086I19.b_48_1103

seq1  GAATTCAACTAACCTGAGATAAAAATTCACTGACCCCCAACCCCTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAACCTGAGATAAAAATTCACTGACCCCCAACCCCTGAATG  50

seq1  GGGCTTGGGCAGTGACCTAGACTGTAGCAGTATGGATTTGAAGCTGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGGCAGTGACCTAGACTGTAGCAGTATGGATTTGAAGCTGACTA  100

seq1  GATTTAAGGGGCCTACAGAGAACAGTAGAGAGGCATCTATGCCCGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAGGGGCCTACAGAGAACAGTAGAGAGGCATCTATGCCCGAGAGA  150

seq1  GCCTTTCTGTGTTTGCTTCCCTGTATCCTTCGCTCCCTACCCTGCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGTGTTTGCTTCCCTGTATCCTTCGCTCCCTACCCTGCCTCCC  200

seq1  CAATCTCCAAACAGGGACACAGACAACTCAGATCTTTTTACACTCAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCAAACAGGGACACAGACAACTCAGATCTTTTTACACTCAGCTT  250

seq1  CTCCCTGTGAATAAATGATTGGGAGACAAAGATACAAAGGAATCCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTGAATAAATGATTGGGAGACAAAGATACAAAGGAATCCAGACC  300

seq1  AGGTAATTCATTTCTATAAAGAGAGAATTATAACCTTTTGATAATTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTCATTTCTATAAAGAGAGAATTATAACCTTTTGATAATTGAAG  350

seq1  AAGGTATAAAGATATAGTGCTCTAACAGATCTCACAGGATACTCATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATAAAGATATAGTGCTCTAACAGATCTCACAGGATACTCATATTC  400

seq1  TGTCTAACGTGAATTCCATGGGAATTTTGGGTTTAAGTTCTGGTTTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACGTGAATTCCATGGGAATTTTGGGTTTAAGTTCTGGTTTGACA  450

seq1  AGCTGCCTCTTATAAGTAGGTAAAGTACCTAAAGATGGGAAATTTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTCTTATAAGTAGGTAAAGTACCTAAAGATGGGAAATTTCACCT  500

seq1  GTGGTTCAGAACCAGATAGGGAATATTAGTCACTGACTCCAAGTAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCAGAACCAGATAGGGAATATTAGTCACTGACTCCAAGTAGAGAG  550

seq1  AGCAGTGACAATCACCTGCTATGAACAGGTATTAATTAATAGAAGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGACAATCACCTGCTATGAACAGGTATTAATTAATAGAAGTTTGT  600

seq1  TCCTCTAGGTAAAGAGCATAACAGATATTATAATAGGTGTTAATTAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGGTAAAGAGCATAACAGATATTATAATAGGTGTTAATTAAATA  650

seq1  AATGTCTGTGGCTCCTGGTAGAGAGCACAACAGACAGGATGGCTACTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTGGCTCCTGGTAGAGAGCACAACAGACAGGATGGCTACTCTA  700

seq1  GGCAGAGAGCTTATTAATTATTAGAAATTTCATGTTCAAAATTGGATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGCTTATTAATTATTAGAAATTTCATGTTCAAAATTGGATAGG  750

seq1  GAATATTAGTCACCGACTCCAAGTAGAGAGAGCAGTGATAATGGCCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAGTCACCGACTCCAAGTAGAGAGAGCAGTGATAATGGCCTGCT  800

seq1  ATGAACAGATATTAATTAATAGAAGTCTGTGGCTCCAGGTAGAGAGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGATATTAATTAATAGAAGTCTGTGGCTCCAGGTAGAGAGCATA  850

seq1  ACAGATACGTATTATACTGGGGGTTAATTAAATAAATGTTTGTGGCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACGTATTATACTGGGGGTTAATTAAATAAATGTTTGTGGCTCAA  900

seq1  GGTAGAAAGTGCCCTAATAAGTCTTACAGGATACTCATATTCTGTATAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAGTGCCCTAATAAGTCTTACAGGATACTCATATTCTGTATAAC  950

seq1  GTGGGCTCCACAGGAATTTTGGGTTTAAATCCTGATTTGACAAGCTGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCCACAGGAATTTTGGGTTTAAATCCTGATTTGACAAGCTGCTT  1000

seq1  CTTATAAGCAGGTATAGAAAGGAGAGAAGGGGAAAGGAAGGAGAGT-AGG  1049
      ||||||||||||||||||||||| |||||||| ||||||||||||| | |
seq2  CTTATAAGCAGGTATAGAAAGGAAAGAAGGGG-AAGGAAGGAGAGTAATG  1049

seq1  GAGGGGG  1056
      |||||||
seq2  GAGGGGG  1056

seq1: chr16_55386027_55386297
seq2: B6Ng01-086I19.g_791_1057 (reverse)

seq1  ATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTA  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCATGGAAACAGAAACTAAACA-GGACACAGTGAAACTAACAGAAGTTA  49

seq1  TGAAACAAATGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACA  100
      |||||| ||||||| ||||||||||||| ||||||||| || || |||||
seq2  TGAAAC-AATGGATTTAACAGATATCTATAGAACATTTAAT-CTTAAACA  97

seq1  AAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGA  150
      |||| | ||||||||||||||||||||||||||| |||||||||||| ||
seq2  AAAGAACATACCTTCTTCTCAGCACCTCATGGTA-CTTCTCCAAAATCGA  146

seq1  CCATATAATTGGTCACAAAACAAGCCTCAACAGACACAAAAATATTGAAG  200
       ||||||||||||||||||||| ||||||| ||| |||| || |||||| 
seq2  TCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAGAAGATTGAAA  196

seq1  CTGTCCCATGAATCCTATCAGATCACCATGGACTAAGGCTGATCTTCAAT  250
         ||||||| |||||||||||||||||  |||||||| |   |||||||
seq2  TAATCCCATGCATCCTATCAGATCACCACAGACTAAGGTTTGCCTTCAAT  246

seq1  AACAACATAAATAATAGAAAG  271
      ||||||| ||| |||||||||
seq2  AACAACAAAAACAATAGAAAG  267